BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16040.1

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929417 jgi|Araly1|929417|scaffold_301874.1                        394    3e-109
  Ahg952505 jgi|Araly1|952505|scaffold_81000002.1                      375    1e-103


> Ahg929417 jgi|Araly1|929417|scaffold_301874.1
Length=237

 Score =  394 bits (213),  Expect = 3e-109
 Identities = 230/238 (97%), Gaps = 2/238 (1%)
 Strand=Plus/Plus

Query  91   CCCTAACCCTAAAATTCAGCCATGTCTTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG  150
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    CCCTAACCCTAAAATTCAGCCATGTCGTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG  60

Query  151  CAGCCCAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG  210
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAGCCTAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG  120

Query  211  AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAAGGATCATTC  270
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAGGGATCATTC  180

Query  271  GGAGGCTCAGGACTTAAGAAAAGTGGGAAGAAATAAGACTAAATCTGCCTCAA-TGTA  327
            |||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| ||||
Sbjct  181  GGAGGCACAGGACTTAAGAAGAGTGGAAAGAAATAAGACTAA-TCTGCCTCAAATGTA  237


> Ahg952505 jgi|Araly1|952505|scaffold_81000002.1
Length=236

 Score =  375 bits (203),  Expect = 1e-103
 Identities = 220/228 (96%), Gaps = 1/228 (0%)
 Strand=Plus/Plus

Query  91   CCCTAACCCTAAAATTCAGCCATGTCTTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG  150
            |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    CCCTAACCCTAAAATTTAGCCATGTCGTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG  60

Query  151  CAGCCCAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG  210
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAGCCTAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG  120

Query  211  AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAAGGATCATTC  270
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAGGGATCATTC  180

Query  271  GGAGGCTCAGGACTTAAGAAAAGTGGGAAGAAATAAGACTAAATCTGC  318
            |||||| ||||||||||||| ||||| ||||||||||||||| |||||
Sbjct  181  GGAGGCACAGGACTTAAGAAGAGTGGAAAGAAATAAGACTAA-TCTGC  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16177969736


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5