BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16050.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479060 jgi|Araly1|479060|fgenesh2_kg.3__1761__AT3G16050.1 1925 0.0
Ahg497537 jgi|Araly1|497537|fgenesh2_kg.810__1__AT3G16050.1 1805 0.0
> Ahg479060 jgi|Araly1|479060|fgenesh2_kg.3__1761__AT3G16050.1
Length=1268
Score = 1925 bits (1042), Expect = 0.0
Identities = 1207/1284 (94%), Gaps = 22/1284 (2%)
Strand=Plus/Plus
Query 86 GACGAACAGTCTCAGAAGTTTCTAGACCAAACCACACTCTTCTTCGTCTTCTCCGTTCTC 145
|||||||| ||||||||| ||||||||||||||||||||||| | |||||||| |||||
Sbjct 1 GACGAACATTCTCAGAAGCTTCTAGACCAAACCACACTCTTC-T--TCTTCTCCATTCTC 57
Query 146 TCTATATTTCTCCTCACCTTCAACGCAGCTTTCTCGTTCTCGTCTCAGATCGTGTTACTA 205
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTATAATTCTCCTCACTTTCCACGCAGCTTTCTCGTTCTCGTCTCAGATCGTGTTACTA 117
Query 206 ACAAACACCGTTTCTCCGGCGAAAAGCTCTCTGTTACTAAAAACTCACAGAACCTAAAAA 265
||||||| | |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 118 ACAAACAACATTTCTCCGGCGAAAAGCTCTCTGTTACT----A---AC--AACCTAAAAA 168
Query 266 TGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACAGCGGCACAG 325
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 169 TGGCGGATCAAGCTATGACTGATCAAGAACAAGGAGCTGTTACTCTCTACAGCGGCGCAG 228
Query 326 CCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAGCTCAGGTAC 385
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 229 CCATCACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTTGGATTAGCTCAAGTAC 288
Query 386 TTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCGCTGAATCCG 445
|||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||||||
Sbjct 289 TTCGTGGCGGCGCCATTGTTGAGGTTTCTTCTGTTAACCAGGCTAAGATCGCTGAATCCG 348
Query 446 CCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTGTTCGTCGTA 505
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 CAGGCGCATGTTCTGTTATCGTCTCAGATCCGGTTCGATCTCGCGGTGGTGTTCGTCGTA 408
Query 506 TGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTGTGATGGCAC 565
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 409 TGCCGGATCCGGTTCTTATCAAAGAGGTGAAACGAGCTGTGTCTGTACCTGTGATGGGAC 468
Query 566 GAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACA 625
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAGCTCGCGTTGGTCATTTCGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACA 528
Query 626 TTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACAAACATAATT 685
||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 529 TTGACGAGAGCGAGATTATCTCTGTAGCGGACGAAGATCATTTCATCAACAAACACAATT 588
Query 686 TCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAG 648
Query 746 AAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACATTGCAGAGA 805
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 AAGGTGCTGCTATGATCAGGATCCAAGGAGATTTAACCGCAACAGGTAATATTGCAGAGA 708
Query 806 CTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATG 768
Query 866 ATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGGCTCAGACTA 925
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 769 ATGAGGTGTTTACATTTGCTAAGAAGATATCAGCACCGTATGATCTTGTGGCTCAGACTA 828
Query 926 AGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGACTCCTGCTG 985
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 829 AGCAGATGGGTAGGGTTCCGGTGGTTCAGTTCGCATCAGGTGGGATCACGACTCCTGCTG 888
Query 986 ATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTGAGGTTTTTG 1045
|||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||
Sbjct 889 ATGCAGCTTTGATGATGCAGCTTGGTTGTGATGGAGTTTTCGTTGGTTCTGAGGTTTTTG 948
Query 1046 ATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATG 1105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 949 ATGGTCCTGATCCGTTTAAGAAGCTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATG 1008
Query 1106 ATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGAGCTTAAATG 1165
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 ATCCTCATGTGTTGGCTGAGATGAGTTCTGGGTTGGAGAATGCAATGGAGAGCTTAAATG 1068
Query 1166 TTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGATGAAAAGGTTCGAAGC 1225
||||||||||||||||||| || ||| ||||||| ||||||||||| ||||||| |||
Sbjct 1069 TTCGTGGTGACAGGATTCAGGATTTTAGCCAAGGAAGTGTTTGATGGGAAGGTTC-AAGT 1127
Query 1226 TGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTTTGAGTCTCAAAATATC 1285
|||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1128 TGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTT-GACTATTAAAATATC 1186
Query 1286 GGTTGTTTTTTGTTAATGCTGGTGCAT--AT--GATCCGTTTGGTTTAATCGAAA-CTTG 1340
||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||||
Sbjct 1187 GGTTGTTTTTTGTTAATGCTGGTGCATGCATATGATCCTTTTGGTTTAATT-AAAGCTTG 1245
Query 1341 CAACAACTAAAACC-TCAATGAAA 1363
|||||||||||||| | |||||||
Sbjct 1246 CAACAACTAAAACCAT-AATGAAA 1268
> Ahg497537 jgi|Araly1|497537|fgenesh2_kg.810__1__AT3G16050.1
Length=1197
Score = 1805 bits (977), Expect = 0.0
Identities = 1143/1220 (94%), Gaps = 24/1220 (2%)
Strand=Plus/Plus
Query 137 TCCGTTCTCTCTATATTTCTCCTCACCTTCAACGCAGCTTTCTCGTTCTCGTCTCAGATC 196
||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 TCCATTCTCTCTATAATTCTCCTCACTTTCCACGCAGCTTTCTCGTTCTCGTCTCAGATC 60
Query 197 GTGTTACTAACAAACACCGTTTCTCCGGCGAAAAGCTCTCTGTTACTAAAAACTCACAGA 256
|||||||||||||||| | ||||||||||||||| | || || |
Sbjct 61 GTGTTACTAACAAACAACATTTCTCCGGCGAAAA-------G---CT-----CT-----A 100
Query 257 ACCTAAAAATGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACA 316
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 101 ACCTAAAAATGGCGGATCAAGCTATGACTGATCAAGAACAAGGAGCTGTTACTCTCTACA 160
Query 317 GCGGCACAGCCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAG 376
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 161 GCGGCGCAGCCATCACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTTGGATTAG 220
Query 377 CTCAGGTACTTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCG 436
|||| |||||||||||||||||||||||||| ||||| || |||||||| |||||| |||
Sbjct 221 CTCAAGTACTTCGTGGCGGCGCCATTGTTGAGGTTTCTTCTGTTAACCAGGCTAAGATCG 280
Query 437 CTGAATCCGCCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTG 496
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 281 CTGAATCCGCAGGCGCATGTTCTGTTATCGTCTCAGATCCGGTTCGATCTCGCGGTGGTG 340
Query 497 TTCGTCGTATGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTG 556
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 341 TTCGTCGTATGCCGGATCCGGTTCTTATCAAAGAGGTGAAACGAGCTGTGTCTGTACCTG 400
Query 557 TGATGGCACGAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGG 616
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 401 TGATGGGACGAGCTCGCGTTGGTCATTTCGTTGAGGCTCAGATCTTGGAATCTCTTGCGG 460
Query 617 TTGATTACATTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACA 676
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 461 TTGATTACATTGACGAGAGCGAGATTATCTCTGTAGCGGACGAAGATCATTTCATCAACA 520
Query 677 AACATAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGA 736
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AACACAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGA 580
Query 737 GAATCAGAGAAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACA 796
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 581 GAATCAGAGAAGGTGCTGCTATGATCAGGATCCAAGGAGATTTAACCGCAACAGGTAATA 640
Query 797 TTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACA 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACA 700
Query 857 TGGATGATGATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGG 916
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 701 TGGATGATGATGAGGTGTTTACATTTGCTAAGAAGATATCAGCACCGTATGATCTTGTGG 760
Query 917 CTCAGACTAAGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGA 976
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 761 CTCAGACTAAGCAGATGGGTAGGGTTCCGGTGGTTCAGTTCGCATCAGGTGGGATCACGA 820
Query 977 CTCCTGCTGATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTG 1036
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 821 CTCCTGCTGATGCAGCTTTGATGATGCAGCTTGGTTGTGATGGAGTTTTCGTTGGTTCTG 880
Query 1037 AGGTTTTTGATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAAC 1096
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 881 AGGTTTTTGATGGTCCTGATCCGTTTAAGAAGCTTAGGAGCATTGTTCAAGCTGTTCAAC 940
Query 1097 ATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGA 1156
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 941 ATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGGTTGGAGAATGCAATGGAGA 1000
Query 1157 GCTTAAATGTTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGATGAAAAG 1216
|||||||||||||||||||||||||||| || ||| ||||||| ||||||||||| |||
Sbjct 1001 GCTTAAATGTTCGTGGTGACAGGATTCAGGATTTTAGCCAAGGAAGTGTTTGATGGGAAG 1060
Query 1217 GTTCGAAGCTGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTTTGAGTCT 1276
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1061 GTTC-AAGTTGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTT-GACTCT 1118
Query 1277 CAAAATATCGGTTGTTTTTTGTTAATGCTGGTGCATATGATCCGTTTGGTTTAATCGAAA 1336
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1119 TAAAATATCGGTTGTTTTTTGTTAATGCTGGTGCATAAGATCCTTTTGGTTTAATT-AAA 1177
Query 1337 -CTTGCAACAACTAAAACCT 1355
|||||||||||||||||||
Sbjct 1178 GCTTGCAACAACTAAAACCT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5