BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16070.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929420 jgi|Araly1|929420|scaffold_301877.1 715 0.0
> Ahg929420 jgi|Araly1|929420|scaffold_301877.1
Length=494
Score = 715 bits (387), Expect = 0.0
Identities = 433/455 (95%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCAGAAAACAAACAGTTTCTTTCATAGAACACTTCACAGTCTCAAGTCCATTATT 60
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 22 ATGTTTCAGAAAACAAACAGTTTCTTTCATAGAACAGTTAACAGTCTCAAGTCCATCATT 81
Query 61 ATCCGAGCAGGTAAGAAACTTCCTAGACCAAAAACTCACTTCTCCTGCACATTTTGCAGA 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CTCCGAACAGGTAAGAAACTTCCTAGACCAAAAACTCACTTCTCCTGCACATTTTGCAGA 141
Query 121 TCAAATTCTCTCGATGGCGACAATATCTACGCAAGTTTCCTCAACATCTGGGAGTCTGAT 180
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TCAAATTCTCTCCATGCCGACAATATCTACGCAAGTTTCCTCAACATCTGGGAGTCTGAT 201
Query 181 CT-AGAAAACAGCATTGAAGGTCCATTAAAGTTGGAGCACAAGGTTCAAGAGCAAGAACA 239
|| | |||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 202 CTCA-AAAACAGCATTGGAGGTCCATTAAAGCTGGAGCAGATGGTTCAAGAGCAAGAACA 260
Query 240 ATA-TCATCAAGTGAAGAAAACAGAAGCTTGCTCTTCGTATTCATCAAGAGACTGCGATA 298
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 ATACT-ATCAAGTGAAGAAAACAGAAGCTTGCTCTTCGCATTCATCAAGAGACTGCGATA 319
Query 299 CAATGGAGAAGAAGATTAACGAGATGTATATGACTGAGACAGTAGATATAGAGCAAGCCC 358
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 320 CAATGGAGAAGAAGATTAACGAGATGTTTATGACTGAGACAGGAGATATAGAGCAAGCCC 379
Query 359 TTGACGTTGAAGAGGCACTTCACTACTATTCTCGTATTAGCAGTCCCGTGTATCTCAACA 418
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 380 TTGACGTTGAAGAGGCACTTCATTACTATTCTCGTATTAGAAGTCCCGTGTATCTCAACA 439
Query 419 TTGTTGACAAGTTCTTCACGGATCTCTACTCTTGA 453
| ||||||||||||||||| |||||||||||||||
Sbjct 440 TCGTTGACAAGTTCTTCACTGATCTCTACTCTTGA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5