BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16080.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929421 jgi|Araly1|929421|scaffold_301878.1 549 8e-156
Ahg923746 jgi|Araly1|923746|scaffold_105027.1 383 9e-106
> Ahg929421 jgi|Araly1|929421|scaffold_301878.1
Length=348
Score = 549 bits (297), Expect = 8e-156
Identities = 332/349 (95%), Gaps = 1/349 (0%)
Strand=Plus/Plus
Query 34 AAGCCGTATCCTAGGGTTTTCTTTGCACACTACTCGCTCCAATGGGAAAGGGAACAGGGA 93
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||| |
Sbjct 1 AAGCCGTATCCTAGGGTTTTC-TTGCACGCAATTCGCTCCAATGGGAAAGGGAACAGGAA 59
Query 94 GTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTT 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTTTCGGTAAGAGGAGGAACAAGAGTCACACACTCTGTGTGAGATGTGGTCGTCGTAGTT 119
Query 154 TCCACATCCAGAAGAGTCGTTGCTCGGCTTGTGCTTACCCAGCTGCTCGCAAGAGGACTT 213
||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct 120 TCCACATCCAGAAGAGTCGTTGCTCTGCTTGCGCTTACCCTGCCGCTCGCAAGAGGACTT 179
Query 214 ACAACTGGAGTGTGAAGGCCATCAGGAGGAAGACTACTGGTACCGGAAGGATGAGGTATC 273
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACAACTGGAGTGAGAAGGCCATCAGGAGGAAGACTACCGGTACCGGAAGGATGAGGTATC 239
Query 274 TCCGTAATGTTCCTCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAA 333
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCGTAATGTTCCCCGTCGGTTCAAGACTGGATTCAGAGAAGGTACTGAAGCCAAGCCAA 299
Query 334 GGAGCAAGGCATCAGCTTCATCAGCTTAAAGAGCCAGTTCGAGTAGTCT 382
| | ||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 300 GAAACAAGGCAGCAGCTTCATCAGCTTAAAGAACCAGTTCGAGTAATCT 348
> Ahg923746 jgi|Araly1|923746|scaffold_105027.1
Length=336
Score = 383 bits (207), Expect = 9e-106
Identities = 270/300 (90%), Gaps = 6/300 (2%)
Strand=Plus/Plus
Query 67 TCGCTCCAATGGGAAAGGGAACAGGG-AGTTTCGGTAAGAGGAGGAACAAGAGTCACACA 125
||||| |||||||||||||||| ||| |||||||| ||||| || |||||||||||||||
Sbjct 17 TCGCTTCAATGGGAAAGGGAAC-GGGAAGTTTCGGAAAGAGAAGAAACAAGAGTCACACA 75
Query 126 CTCTGTGTGAGATGTGGTCGTCGTAGTTTCCACATCCAGAAGAGTCGTTGCTCGGCTTGT 185
|||||||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 76 CTCTGTGTCAGATGTGGCCGTCGCAGTTTCCATATCCAGAAGAGCCGTTGCTCTGCTTGT 135
Query 186 GCTTA-CCCAGCTGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCCATCAGGAGGAA 244
||||| ||| || ||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 136 GCTTATCCC-GCAGCTCGCAAGAGGACTTACAACTGGAGTGTGAAGGCAATCCGTAGAAA 194
Query 245 GACTACTGGTACCGGAAGGATGAGGTATCTCCGTAATGTTCCTCGTC-GGTTCAAGACTG 303
||||||||| || |||||||||||||||||||| ||||| ||||| | |||||||||| |
Sbjct 195 GACTACTGGAACTGGAAGGATGAGGTATCTCCGCAATGTCCCTCG-CAGGTTCAAGACCG 253
Query 304 GATTCAGAGAAGGTACTGAAGCCAAGCCAAGGAGCAAGGCATCAGCTTCATCAGCTTAAA 363
| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 254 GTTTCAGAGAAGGTACCGAAGCCAAGCCAAGGAACAAGGCAGCAGCTTCATCAGCTTAAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5