BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16090.1
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929422 jgi|Araly1|929422|scaffold_301879.1 2108 0.0
Ahg315468 jgi|Araly1|315468|fgenesh1_pm.C_scaffold_2000501 490 2e-137
> Ahg929422 jgi|Araly1|929422|scaffold_301879.1
Length=1551
Score = 2108 bits (1141), Expect = 0.0
Identities = 1250/1304 (96%), Gaps = 2/1304 (0%)
Strand=Plus/Plus
Query 351 gaagaagaagaagaagaCGATGATTCGACTAAGAACATACGCAGGCCTTAGTTTTATGGC 410
||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 2 GAAGACGAAGAAGAAGACAATGATTCGACTAAGAACATACGCAAGCCTTAGTTTTATGGC 61
Query 411 AACTTTGGCTGTAATTTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGT 470
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GACTTTGGCTGTAATCTATCATGCATTCAGCAGCAGAGGCCAATTTTACCCTGCGACTGT 121
Query 471 TTATCTATCAACCTCAAAGATCAGTTTGGTGTTGCTTCTCAATATGTGTTTGGTTCTTAT 530
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 122 TTATTTATCAACCTCAAAGATCAGTTTGGTGCTGCTTCTCAATATGTGTTTGGTTCTTAT 181
Query 531 GCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCTTAGTCTCTGGCATTTGGTCAAATTTGTCTTCTTGGGGTCTCTTAGGGAAGCAGAAGT 241
Query 591 CGAGAGGCTAAATGAACAAGCTTGGAGAGAACTTATGGAGATTCTCTTTGCCATTACTAT 650
||||||| | ||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 242 CGAGAGGTTGAATGAACAAGCTTGGAGAGAAGTCATGGAGATTCTTTTTGCCATTACTAT 301
Query 651 CTTTAGACAAGACTTTTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAA 710
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTTTAGACAAGACTTCTCTAGTGGGTTTCTTCCTTTGGTTGTTACTCTTCTGTTGATCAA 361
Query 711 GGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTCTC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 GGCTTTACATTGGCTTGCTCAGAAAAGAGTTGAATACATTGAGACTACTCCTTCTGTGTC 421
Query 771 TAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAAGCTTTCTCATTTTCGTATTGTCTCTTTTATGGGTTTCCTTCTTCTTGTGGATAGTTT 481
Query 831 ATTTATGTACAGTTCTATACGCCACTTGATTCAGTCGCGTCAGGCTTCGGTTTCTCTCTT 890
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 482 GTTTATGTACAGTTCTATACGTCACTTGATTCAGTCGCGCCAGGCTTCGGTTTCTCTCTT 541
Query 891 CTTCTCATTCGAGTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGT 950
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 542 CTTCTCATTCGAGTATATGATACTGGCGACGACGACTGTTGCTATCTTTGTGAAGTACGT 601
Query 951 TTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAGCCAGTTTATACTTT 1010
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 602 TTTCTATGTCACTGATATGTTAATGGATGGTCAATGGGAGAAGAAACCAGTTTATACTTT 661
Query 1011 CTATCTTGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGT 1070
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTATCTGGAGCTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGT 721
Query 1071 CATATTCATGAACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAG 1130
|||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 722 CATATTCATGAACTATGGTGTGCCTTTACACTTGTTACGGGAGCTCTACGAGACCTTCAG 781
Query 1131 AAACTTCCAGATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAA 1190
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAACTTCCAAATTCGTGTTTCCGATTACCTTCGTTATCGTAAGATCACGTCCAATATGAA 841
Query 1191 CGACAGGTTTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCAT 1250
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 842 CGATAGGTTTCCTGATGCAACTCCCGAAGAACTTACTGCAAGTGATGCCACATGTATCAT 901
Query 1251 ATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGCCGTGAAGAGATGACAAATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCA 961
Query 1311 TTGTCTACGATCATGGTTGGAGAGACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGT 1370
|||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 962 TTGTCTTCGATCATGGTTGGAGCGACAGCAGACGTGTCCTACTTGTAGAGCACTTGTTGT 1021
Query 1371 ACCTCCTGAGAATGCCACCTCTGCAGCTCCAGGCCAACGTGAATTACACCAAGGTTCCCA 1430
|||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1022 ACCTCCTGAGAATGCCACATCTGCAGCTGCAGGCCAACGTGGATTATACCAAGGTTCCCA 1081
Query 1431 ACAGGGTACATCAAGCTCAGGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTGGCGTTTC 1490
||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||
Sbjct 1082 ACAGGGTACATCAAGCTCAAATAACCAGGGCTCTGAAACAAGTTCTGCTGCTGGCGTTTC 1141
Query 1491 CAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAGCCTCCGT 1550
|||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1142 CAATGATAATTTGAGCAGGCACCACGCCAGACTTCAAGCAGCTGCTTCTGCAGCCTCCAT 1201
Query 1551 GTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGTCGGG-AGTTC 1609
||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 1202 GTATGGGAAATCAATGGTTTACCCATCTGCAAACACAGTAGCATGGTCGCCGAGTA-TTC 1260
Query 1610 CTGGAACAGAGCAAGTGTCAACTGAACCAGATCAAACTCTTCCT 1653
|||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 1261 CTGGGACAGAGCAAGTGTCAACTGAACCACATCAAACTCGTCCT 1304
Score = 268 bits (145), Expect = 9e-71
Identities = 179/196 (91%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1648 CTTCCTCAACACAACCTTCCTGTTGAAAACTCTCATGCCTATGCAAATATGTCGGAGACT 1707
|||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||
Sbjct 1326 CTTCCTCAACACAACCTTCCAGGTGAAAACCCTCAAGCCTATGCAAATATGTCGGAGACT 1385
Query 1708 AAGCTAGAAGAAATGAGAAAATCTCTGGAAACCCACCTCGAGATTTTGCGAAACCGACTT 1767
||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 1386 AAGCTGGAAGAAATGAGAAAATCTCTCGAGACCCACCTGGAGATTTTGCGAAACCGGCTT 1445
Query 1768 CACTTTCTGGAGACGAGGAAACCAGAATCCGCAGGGGAACCAGAGAACAAAGGAAAGTCG 1827
|| |||||||||| |||||||||||| ||| |||| ||| |||| |||||||||||||||
Sbjct 1446 CATTTTCTGGAGAAGAGGAAACCAGAGTCCACAGGAGAAGCAGATAACAAAGGAAAGTCG 1505
Query 1828 GTTGCTGATGCAGCAG 1843
||||| ||||||||||
Sbjct 1506 GTTGCGGATGCAGCAG 1521
> Ahg315468 jgi|Araly1|315468|fgenesh1_pm.C_scaffold_2000501
Length=1467
Score = 490 bits (265), Expect = 2e-137
Identities = 574/718 (80%), Gaps = 41/718 (6%)
Strand=Plus/Plus
Query 903 GTATATGATACTGGCGACAACGACTGTTGCTATTTTTGTGAAGTATGTTTTCTATGTCAC 962
||||||||| ||||| ||||| |||||| ||||| |||| ||||||| |||||||||||
Sbjct 615 GTATATGATTCTGGCAACAACAACTGTTTCTATTATTGTAAAGTATGCCTTCTATGTCAC 674
Query 963 TGATAT-GTTAATGGATGGTCAATGGG-AGAAGAAGCCAGTTTATACTTTCTATCTTGAG 1020
|||||| | || ||| |||||||||| || ||| || || || ||||||||||| |||
Sbjct 675 TGATATACTCAA-GGAAGGTCAATGGGAAG-GGAAACCGGTATACACTTTCTATCTGGAG 732
Query 1021 CTTATCCGTGACCTGCTTCACTTGTCCATGTATATCTGCTTCTTCTTTGTCATATTCATG 1080
||| | |||||| |||||||||||||||||||| | ||||||||| || | |||||||||
Sbjct 733 CTTGTTCGTGACTTGCTTCACTTGTCCATGTATCTTTGCTTCTTCCTTATGATATTCATG 792
Query 1081 AACTATGGCGTGCCTTTGCATTTGTTACGGGAGCTCTACGAAACCTTCAGAAACTTCCAG 1140
||||||||| | || |||||| | ||||||||||||||||||| |||||||||||| ||
Sbjct 793 AACTATGGCCTTCCCTTGCATCTAATACGGGAGCTCTACGAAACGTTCAGAAACTTCAAG 852
Query 1141 ATTCGTGTTTCCGATTACCTTC-GTTATCGTAAGATCACGTCCAATATGAACG-ACAGGT 1198
|||||||| | ||||||| || | |||||||| ||||| ||||||||||| | || |||
Sbjct 853 ATTCGTGTGACTGATTACC-TCAGATATCGTAAAATCACTTCCAATATGAATGAAC-GGT 910
Query 1199 TTCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTG 1258
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||
Sbjct 911 TTCCTGATGCAACTCCTGAAGAACTTAGTGCAAATGATGCCACTTGTATCATATGTCGTG 970
Query 1259 AAGAGATGACAA-ATGCGAAGAAACTAATATGCGGGCATCTCTTTCATGTGCATTGTCTA 1317
|||| ||||| | ||||||||| || |||| || ||||| |||||||||||||||||
Sbjct 971 AAGAAATGACCTCA-GCGAAGAAATTAGTATGTGGCCATCTATTTCATGTGCATTGTCTG 1029
Query 1318 CGATCATGGTTGGAGA-GACAGCAGACATGTCCTACTTGCAGAGCACTTGTTGTACCTCC 1376
|| ||||||||||| | ||||| | |||||||| || ||||||||||| ||||| || |
Sbjct 1030 CGGTCATGGTTGGA-ACGACAGAACACATGTCCCACCTGCAGAGCACTGGTTGTCCCAGC 1088
Query 1377 TGAGAATGCCACCTCTGCAGCTCCAGGCCAAC-GTGAATTACACCAAGGTTCCCA--A-C 1432
||| ||||| || || ||||| | || ||| ||| | |||||||| |||| | |
Sbjct 1089 TGAAAATGCTACATCAACAGCTTCTGGA-AACCGTGGACCACACCAAGAATCCCTGCAGC 1147
Query 1433 A-GG----G-TACATCAAGCTC-A--GGTAACCAGGGCTCTGAAATAAGTTCTTCAGCTG 1483
| || | ||| ||||| || | ||| | |||| ||| | ||| | | ||||
Sbjct 1148 AAGGAATCGGTACTTCAAGTTCTAATGGT--C-AGGGTTCTTC--T--GTT-T-CTGCTG 1198
Query 1484 GCGTTTCCAATAATAGTTTGAGCAGGCACCACGCCAGGCTTCAAGCAGCTGCTTCTGCAG 1543
| | ||| | | | | ||||||||||| | || ||| ||||||| |||||||||||||
Sbjct 1199 -C-TC-CCAGTGAGAATATGAGCAGGCACGAGGCTAGGTTTCAAGCTGCTGCTTCTGCAG 1255
Query 1544 CCTCCGTGTATGGGAAATCAATGGTTTACCCATCT---GCAAACACAGTAGCATGGTC 1598
|||| | ||||||| ||| | ||||| |||||| ||||||||| ||| ||||||
Sbjct 1256 CCTCTATATATGGGAGATCCGTTGTTTATCCATCTTCTGCAAACACACTAGTATGGTC 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5