BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16110.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479065 jgi|Araly1|479065|fgenesh2_kg.3__1766__AT3G16110.1 2449 0.0
> Ahg479065 jgi|Araly1|479065|fgenesh2_kg.3__1766__AT3G16110.1
Length=1674
Score = 2449 bits (1326), Expect = 0.0
Identities = 1570/1682 (93%), Gaps = 39/1682 (2%)
Strand=Plus/Plus
Query 95 ATGTTGACGAAACCAAAACCCAATTCCAAATTTTCAATCTTGTTCACTTTCCTTTTGCTC 154
||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| | ||
Sbjct 1 ATGTTGATGAAACCAAAACCCAGTTCTAAATTTTCAATCTTGTTCACCTTCCTCATACTT 60
Query 155 CTCAGTTTCTTAATCTTCGTTGCT-CGTTCCTCTGATGTCGCCGTC----G--AAG---C 204
|||||| |||||||| ||| || | ||||||||||||||||||||| | ||| |
Sbjct 61 CTCAGTCTCTTAATCGTCG-TGGTCCGTTCCTCTGATGTCGCCGTCGAAGGTAAAGAATC 119
Query 205 CGGATCCGAGGAAGAATTAGACGATCTAGAGCAGCTCCTT-GCGGTTGACGAACAATTGC 263
||||||||||||||||||||||||||| |||||||| ||| ||||| || ||||||||||
Sbjct 120 CGGATCCGAGGAAGAATTAGACGATCTGGAGCAGCT-CTTAGCGGTGGATGAACAATTGC 178
Query 264 AGGAAGAGAGACCAGAGCAACAATCTGAAGCGGAGACGGTGAGCAAGGCGCAGCGGATCG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 179 AGGAAGAGAGACCAGAGCAACAATCTGAAGCGGAGACGGTGAGCAAGGCGCAGAGGATTG 238
Query 324 TTGTGGAACTCAACGGAGACAATACGAAGCGATTGATTGATGGGAATGAGTATGTGATGG 383
| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 239 TGGTGGAACTCAATGGAGACAACACGAAGCGGTTGATTGATGGGAATGAGTATGTGATGG 298
Query 384 TTTTAGGTTACGCGCCGTGGTGTGCGAGGAGTGCTGAGCTAATGCCGAGATTTGCGGAGG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTAGGTTACGCGCCGTGGTGTGCGAGGAGTGCTGAGCTAATGCCGAGATTTGCGGAGG 358
Query 444 CGGCGACGGATTTGAAGGAAATTGGTAGTTCGGTTTTGATGGCGAAGATTGACGGCGAGA 503
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 359 CGGCGACGGATTTGAAGGAGATTGGTAGTTCGGTTTTGATGGCTAAGATTGACGGTGAGA 418
Query 504 GGTATTCGAAAGTGGCGTCTCAGCTTGAGATTAAAGGTTTCCCAACGCTTCTTCTGTTTG 563
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTATTCGAAAGTGGCGTCGCAGCTTGAGATTAAAGGTTTCCCAACGCTTCTTCTGTTTG 478
Query 564 TTAATGGCACATCTCAGTCTTACACTGGTGGATTTTCCTCAGAGGAGATAGTGATTTGGG 623
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TTAATGGCACATCTCAGTCTTATACTGGTGGATTTTCCTCAGAGGAGATAGTGATTTGGG 538
Query 624 TGCAAAAGAAGACTGGTGCGTCTACTATTAAACTTGATACAGTTGATGAAGCTTCAGGAT 683
| |||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 539 TACAAAAGAAGACTGGTGTGCCTACTATTAAACTTGATACAGTTGATAAAGCTTCAGGAT 598
Query 684 TTCTGAAGAAGCATCATACTT-TCATTCTCGGTCTATTCGAAAAGTCTGAGGATTCTTCT 742
||||||||||||||||||||| | ||| | ||||||||| ||||||||||||||||||||
Sbjct 599 TTCTGAAGAAGCATCATACTTAT-ATTGTTGGTCTATTCAAAAAGTCTGAGGATTCTTCT 657
Query 743 GGACATGATGAATTTGTAAAAGCTGCGTCGTTAGACAATGAAATCCAGTTTGTAGAAACA 802
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGATATGATGAATTTGTAAAAGCTGCGTCGTTAGACAATGAAATCCAGTTTGTAGAAACA 717
Query 803 AGCAGCATTGATGTTGCTAAGCTTCTCTTCCCTAACCTTAAAACCAACAATGTGTTTGTT 862
||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 718 AGCAGCAGTGATGTTGCTAAGCTTCTCTTCCCTAACCCTAAAACCAATAATGTGTTTGTT 777
Query 863 GGATTGGTTAAAACTGAGGCTG-AA---A-A--G--TA---T-A-CTTCAT-ATGATGGA 907
|| ||||||||||||||||||| || | | | || | | || | | ||||||||
Sbjct 778 GGCTTGGTTAAAACTGAGGCTGAAAGGTACACTGCATACGGTAAGCTCCTTGATGATGGA 837
Query 908 CCT-TGCCAAGCCGAGAAGATAGTGGAATTTCTGAACAGTAATAAATTCCCTTTGGTTAC 966
|| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 TCTCT-CCAAGCCGAAAAGATATTGGAATTTCTGAACAGTAATAAATTCCCTTTGGTTAC 896
Query 967 AAAATTGACTGAATCCAACACCGTTCGTGTTTACT-CCAGTCCAGTCAAGCTTCAGGTTA 1025
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 897 AAAATTGACTGAATCCAACACCGTTCGTGTTTA-TGCCAGTCCAGTCAAGCTTCAGGTTA 955
Query 1026 TGGTCTTTTCGAAGACTGATGACTTTGAAAGTCTAGCTCAGCCTCTAGAAGATATTGCAA 1085
|||||||||| |||| ||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct 956 TGGTCTTTTCAAAGAGTGATGACTTTGGAAGTCTTGCTCAGCCTCTAGAAAATATTGCAA 1015
Query 1086 GAAAGTTCAAATCAAAGCTTATGTTGATATATATTGACATATCAAACGAAAACCTCGCAA 1145
||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1016 GAAAGTTCATATCAAAGCTTATGCTGATATATATTGACATATCAAATGAAAACCTCGCAA 1075
Query 1146 TGCCATTCTTGACATTATTCGGGATAGAAGATGCAAAGAAAACTGTTGTTGCTGCATTCG 1205
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 TGCCATTCTTGACATTGTTCGGGATAGAAGATGCAAAGAAAACTGTTGTTGCTGCGTTCG 1135
Query 1206 ACAACAACCTGAACTCCAAGTATTTGCTTGAGTCGGATCCATCTCCTAGCAATATAGAAG 1265
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACAACAACTTGAACTCCAAGTTTTTGCTTGAGTCGGATCCATCTCCTAGCAATATAGAAG 1195
Query 1266 AATTTTGTTTCGGACTTGCTCATGGAACTGTTTCAGCTTACTATAAGTCACAGCCTATTC 1325
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1196 AATTTTGTTTCGGACTTGCGCATGGAACTGTTTCACCTTACTATAAGTCACAGCCAATTC 1255
Query 1326 CAGATAATCAAAATGCAAGCGTAGTGGCTGTGGTCGGCAGGACTTTTGATGAAGTGGTCT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1256 CAGATAATCAAAATGCAAGCGTAGTGGCTGTGGTCGGCAGGACTTTTGATGAACTGGTCT 1315
Query 1386 TGAGGAGCAGCGAGAATGTTCTTCTTGAGGTGCACACACCATGGTGTATTAACTGTGAGG 1445
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGAAGAGCAGCGAGAATGTTCTTCTTGAGGTGCACACACCATGGTGTATTAACTGTGAGG 1375
Query 1446 CTCTGAGTAAACAGGTTGAGAAGTTGTCGCAACACTTTAAAGGGTTTGAAAATCTTGTCT 1505
||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||| |
Sbjct 1376 CTCTGAGTAAACAGGTTGAAAAGTTGTCGAAACACTTTCAAGGGTTTGAGAATCTTGTTT 1435
Query 1506 TTGCAAGGATAGACGCTTCTGCAAACGAGCATCCTAAGCTAACGGTTGATGATTACCCGA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1436 TTGCAAGGATAGACGCTTCTGCAAACGAGCATCCTAAGCTAACGGTTGATGATTATCCGA 1495
Query 1566 CAATCTTGCTTTACAA-GACTGGTGAAAAGGAGAATCCGTTAAAGCTTTCGACGAAATCC 1624
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CAATCTTGCTTTACAAAGCC-GGTGAAAAGGAGAATCCGTTAAAGCTTTCGACGAAATCC 1554
Query 1625 AGTGCGAAGGATATGGCTGTTTTAATCAACAAAGAGTTGAAATGGAAGGATCAGTCTGGT 1684
||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1555 AGTGCAAAGGAAATGGCTGTTTTAATCAACAAAGAGTTGAAATCGAAGGATCCGTCTGCT 1614
Query 1685 AAAGATGAGTTATAGAAGCCATCTGAAATCTGA-GTTAGGGATCAAATTAATAGTTGTTT 1743
||||||||||||||||||| ||||| ||||||| || |||||||||||| ||||||||||
Sbjct 1615 AAAGATGAGTTATAGAAGC-ATCTGGAATCTGACGT-AGGGATCAAATTTATAGTTGTTT 1672
Query 1744 GT 1745
||
Sbjct 1673 GT 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5