BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16120.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1 789 0.0
Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1 327 5e-89
> Ahg479066 jgi|Araly1|479066|fgenesh2_kg.3__1767__AT3G16120.1
Length=625
Score = 789 bits (427), Expect = 0.0
Identities = 551/606 (91%), Gaps = 28/606 (5%)
Strand=Plus/Plus
Query 5 AAAATTGTGACCAAAACA-AAAGTT-AAAGATAAGAAGAACGAAGAAGAATAAGCAAGAT 62
|||||||||||||||| | |||||| |||||||||||||| ||||||||| ||| |||||
Sbjct 1 AAAATTGTGACCAAAA-ATAAAGTTAAAAGATAAGAAGAAAGAAGAAGAAGAAGAAAGAT 59
Query 63 TTTCTTATCTAGATATCTGCAAGGTAATAATACAGTTCCTTAAACTCAGGAAGAAAAGAG 122
|||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 60 TTTCTTATCTAGTTATCCACAAGGTAATAATACAGTTCCTTAAACTCAGGAAG-AAATAG 118
Query 123 AAAACGACAGAGGC--AGAACATGTGGAGATTCTCT-CC-------CTAAAACCTGTCCA 172
||||||||||| | | |||||||||||||||| | || ||||||||||||||
Sbjct 119 AAAACGACAGAAACATACAACATGTGGAGATTCTATCCCTAAAAGGCTAAAACCTGTCCA 178
Query 173 AAACGTGACGTACAATTCATTTTTATCTTCTCCTTACGAGTTATCTTCT-CT---A-TTT 227
||||||||||||||||||| ||||||||||||||||| ||||||||||| | | |||
Sbjct 179 AAACGTGACGTACAATTCA-TTTTATCTTCTCCTTACAAGTTATCTTCTAATAGGAGTTT 237
Query 228 TTGTTTTAATAT-AGAAA-TTTTGAGTCTTTGAGTAAAAAGATGTTGGAAGGGAAAGCGA 285
|||||||| | | ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 TTGTTTTAGT-TCAGAAACTTTTGAGTCTTTGAGT-AAAAGATGTTGGAAGGGAAAGCGA 295
Query 286 AGGTGGAAGAGACAGACATGCCTGTGAAGATGCAAATGCAAGCAATGAAGATTGCTTCTC 345
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 296 AGGTGGAAGAGACAGACATGCCAGTGAAGATGCAAATGCAAGCAATGAGGATTGCTTCTC 355
Query 346 AATCTCTCGATCTTTTTGATGTCTTTGATTCTATATCCATCGCTGCTCACATCAAGAAGG 405
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 356 AATCTCTCGATCTTTTTGATGTCTTTGACTCTATTTCTATCGCTGCTCACATCAAGAAGG 415
Query 406 AGTTCGATGAGAGATATGGAAGTGGATGGCAATGTGTCGTGGGAACCAATTTTGGGTGTT 465
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 AGTTTGATGAGAGATATGGAAGTGGATGGCAATGTGTTGTGGGAACCAATTTTGGGTGTT 475
Query 466 TCTTCACACATTCTAAAGGAACTTTCATCTATTTTCATTTGGGGACTCTCAACTTCCTCA 525
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 476 TCTTCACACATTCTAAAGGAACTTTCATCTATTTTCATTTGGGCAGTCTCAACTTCCTCA 535
Query 526 TCTTCAAAGGCGCCACTCTTTAGTTTCTTCTAAACCACATCCATGTTTCATTTCCTTTTC 585
||||||||||||||||| |||||||||| ||||||||||||| ||| |||| |||||
Sbjct 536 TCTTCAAAGGCGCCACTGTTTAGTTTCT---AAACCACATCCATCTTTT-TTTCTTTTTC 591
Query 586 TTTTAA 591
||||||
Sbjct 592 TTTTAA 597
> Ahg474342 jgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1
Length=671
Score = 327 bits (177), Expect = 5e-89
Identities = 244/277 (88%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 263 AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCTGTGAAGATGCAAA 321
||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||| |
Sbjct 242 AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA 300
Query 322 TGCAAGCAATGAAGATTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGATTCTATAT 381
||||||| ||| ||||||||||| |||| |||||||||||||||||||||| || ||
Sbjct 301 TGCAAGCTATGTCTTTTGCTTCTCAAGCTCTTGATCTTTTTGATGTCTTTGATTGTAAAT 360
Query 382 CCATCGCTGCTCACATCAAGAAGGAGTTCGATGAGAGATATGGAAGTGGATGGCAATGTG 441
|||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 361 CCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTG 420
Query 442 TCGTGGGAACCAATTTTGGGTGTTTCTTCACACATTCTAAAGGAACTTTCATCTATTTTC 501
| |||||| | |||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 421 TGGTGGGATCAAATTTTGGGTGTTTCTTCACACATTCTAAAGGGACTTTTATCTATTTCC 480
Query 502 ATTTGGGGACTCTCAACTTCCTCATCTTCAAAGGCGC 538
| |||| ||| || || || |||||||| ||||||||
Sbjct 481 AATTGGAGACACTTAAGTTTCTCATCTTTAAAGGCGC 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5