BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16160.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904555 jgi|Araly1|904555|Al_scaffold_0003_1683 756 0.0
> Ahg904555 jgi|Araly1|904555|Al_scaffold_0003_1683
Length=1266
Score = 756 bits (409), Expect = 0.0
Identities = 519/572 (91%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 ATGACAGGAAACGCAGATTCCGGCAAAATCGCGACAGAGAAAGACCCTAGGAAGCTCGTT 60
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACAGGTAACGCAGATTCCGGCAAAATCGCGACAGAGAAAGACCAAAGGAAGCTCGTT 60
Query 61 TTCACCAAATTGGAGGTATCTCCCGTCTTCCGAGAATCTCCTGTTAAAGAACTTCCTCTT 120
||||||||||||||| ||||||||||||||| || || ||||||||||||||||||| |
Sbjct 61 TTCACCAAATTGGAGTTATCTCCCGTCTTCCTTGAGTCGCCTGTTAAAGAACTTCCTCCT 120
Query 121 TTTCCTCCGATTTCTCGAGAGCATTCAGAAGCAAAGGATAAGACAGATGAAGAAGGCATT 180
|||||||||||||||||| ||||||||||| ||||||||| ||||||| | |||||||||
Sbjct 121 TTTCCTCCGATTTCTCGAAAGCATTCAGAAACAAAGGATACGACAGATCAGGAAGGCATT 180
Query 181 ACTTCGAGGAAACACAAAGGATGTCGATGCAAGCAGTCCAAATGTTTAAAGTTGTACTGT 240
||||||||| || || ||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 ACTTCGAGG-AA-AC----GATGTCGATGCAAACAATCCAAATGTTTAAAGTTGTACTGT 234
Query 241 GACTGTTTTGCATCAGGAGTGGTATGTACAGACTGTGATTGTGTTGATTGTCATAACAAC 300
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 235 GACTGTTTTGCATCAGGAGTGTTATGTACCGACTGTGATTGTGTTGATTGTCATAACAAC 294
Query 301 TCTGAGAAATGTGATGCTAGAGAAGCAGCTATGGTGAATGTACTAGGTCGCAACCCAAAT 360
||||| || | |||||| ||||| |||||| || ||||||||||||||||||||||||||
Sbjct 295 TCTGACAACTATGATGCCAGAGATGCAGCTGTGCTGAATGTACTAGGTCGCAACCCAAAT 354
Query 361 GCCTTCAGTGA-AAAGGCTTTAGGTAGCCTAACTGATAATCAGTGTAAGGCTGCACCTGA 419
|| |||| ||| ||| ||||| ||| ||| ||| || ||||||||||||||||||||
Sbjct 355 GCTTTCAATGAGAAACTTTTTAGC-AGCATAAATGACAAGCAGTGTAAGGCTGCACCTGA 413
Query 420 TACTAAACCTGGACTGCTTTCGAGAGGCTGCAAATGTAAAAGAACCAGGTGTTTGAAGAA 479
||||| |||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||
Sbjct 414 TACTAGACCTGGACTGCTTTCGAGAGGCTGTAAATGCAAAAGAACCAAGTGCTTGAAGAA 473
Query 480 GTACTGTGAGTGCTTTCAGGCTAATCTTCTGTGCTCAGACAACTGTAAATGCATCAACTG 539
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 474 GTACTGTGAATGCTTTCAGGCTAATGTTTTGTGCTCAGACAACTGTAAATGCATCAACTG 533
Query 540 CAAGAATGTTAGTGAAGCGTTCCAGCCTCCTG 571
||||||||| |||||||||||||||||| |||
Sbjct 534 CAAGAATGTCAGTGAAGCGTTCCAGCCTTCTG 565
Score = 619 bits (335), Expect = 1e-176
Identities = 482/550 (88%), Gaps = 21/550 (4%)
Strand=Plus/Plus
Query 566 CTCCTGCATTTTCTGCTCACAATTCCCCACAAGTATACCGGAGGAGAAGAGACCGAGAGC 625
|||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||
Sbjct 713 CTCCTGGATTTTCTGCTCACAACTCCCCACAGGTATACCGGAGAAGAAGACACCGAGAGC 772
Query 626 TAACTGAGTGGAATTCTTGTCCAGCTCCGTTATTTTCGATACCTGACAATTCCATTCAAA 685
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 773 TACCTGAGTGGAATTCTTGTCCAGCTCCATTATTTTCGATACCTGACAATTCCATTCAAA 832
Query 686 ATGCTCTGGGTTCCCCTATGTCTTGCTCTCCTAAACTTCCTTACAGAAAGAAAAGGTCCC 745
|| ||||||||||||||||| || |||||||||| ||||||||||||||||||| | |||
Sbjct 833 ATACTCTGGGTTCCCCTATGACTAGCTCTCCTAAGCTTCCTTACAGAAAGAAAAAGCCCC 892
Query 746 TCAT-GGGATACACCTCTACACTTCTTCCGGACTTGGGAGATTTATGCTCACTTCTCGTT 804
||| |||||| | || ||| || |||| || || |||||| |||||||||||||| ||
Sbjct 893 -CATTGGGATATGCTTCCACAGTTGTTCCAGATTTAGGAGATATATGCTCACTTCTC-TT 950
Query 805 -GCAGCGTCAGAATCTGCTACAAC-AACTGCAGAGGACCAGAACAGGATATTTACAAAGC 862
||||| || ||| |||||||| | || |||||| |||||||||||||||| || |||||
Sbjct 951 AGCAGCATCTGAAACTGCTACAGCCAA-TGCAGAAGACCAGAACAGGATATGTATAAAGC 1009
Query 863 CTGATGATAAGGAAGCCAT--TG-AG-CTG---TCA---AGTGAGTCTGAGAGTCG-TAA 911
|||||||||||| || || || | ||| | | ||||||||||| || || |||
Sbjct 1010 CTGATGATAAGGTAGACAACGTGTACACTGAGGT-ATTGAGTGAGTCTGAAAG-CGGTAA 1067
Query 912 TGTGGAAGAAGAAATACAATCACGTG-GAAGATTGATCGAACTGATAGATGTTCAATACA 970
|||||||||||||| |||||| | | |||||||||||||||||||||||| |||||| |
Sbjct 1068 TGTGGAAGAAGAAACACAATC-CTTTCGAAGATTGATCGAACTGATAGATGCTCAATATA 1126
Query 971 ATGGAGAAGAGGATTCCCAATGTAAGACCAAGACAAGTGTCAATGAAACAGATATATACA 1030
||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1127 ATGGAGAAGAGCATTCCAAATGTAAGACCGAGACAAGTGTCCATGAAACAGATATATACA 1186
Query 1031 TGGAGCAGGAAAGGGCAGTGCTTGAAACTTTCAGAGACTGTCTCCAAAAGTTCATCAAAT 1090
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1187 TGGAGCAGGAAATGGCAGTTCTTGAAACTTTCAGAGACTGTCTCCAAATGTTCATCAAAT 1246
Query 1091 CGAGACTGGA 1100
||||||||||
Sbjct 1247 CGAGACTGGA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5