BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16175.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318393 jgi|Araly1|318393|fgenesh1_pm.C_scaffold_3001409           754    0.0  


> Ahg318393 jgi|Araly1|318393|fgenesh1_pm.C_scaffold_3001409
Length=474

 Score =  754 bits (408),  Expect = 0.0
 Identities = 452/474 (95%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  34   ATGGTAGATCCAACGATCCATAACACGACGACGTATCTCGAAGAGATAGCAAAAGGAAAC  93
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTAGATCCAACGATCCATAACACGACGACGTATCTCGAAGAGATAGCAAAAGGAAAC  60

Query  94   GGGCAAACCGAGTTCGAGATTTTAATCTTGAAAGGCTTAGAACTCATCCATGTCGGGAAA  153
            ||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct  61   GGGAAAACCGAGTTCGAGATTTTAATCTTGCAAGGTTTAGAACTCATTCATGTCGGGAAA  120

Query  154  GGGATCTTACGTTGTAAATTACTTGTCACAGATCATGTCGTGGGAGAAGATGGAAGTTGG  213
            || | |||||| |||| |||| | |||||||||| ||||| |||||||||||||||||||
Sbjct  121  GGAACCTTACGATGTAGATTAGTCGTCACAGATCGTGTCGCGGGAGAAGATGGAAGTTGG  180

Query  214  AATGCGGGAGTGATTACGGCGGTGATGGACTCGATCGGAGCGTCAGCTGTGTACTCCTCC  273
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  AACGCCGGAGTGATTACGGCGGTGATGGACTCGATCGGAGCGTCAGCTGTGTACTCCGCC  240

Query  274  GGCGGCGGACTCCATATCTCTGTTGATCTCAACTCTTCGTTTTATTCAACGGCCAAGATT  333
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGCGGAGGACTCCATATCTCTGTTGATCTCAACTCTTCGTTTTATTCAACGGCCAAGATT  300

Query  334  CACGAAACGGTAGAGATAGAAGCAAGAGTGAATGGAAGCAATGGAGGATTAAAATCAGCT  393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CACGAAACGGTAGAGATAGAAGCAAGAGTGAATGGAAGCAATGGAGGATTAAAATCAGCT  360

Query  394  GTGATTGAGATTAGAAGAGAAACAAGTGGAGAAATTATAGCCACAGGAAGATTGTGGATG  453
            ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct  361  GTGATTGAGATTAGAAGAGAAACAAATGGAGAAATCATAGCCACAGGAAGATTGTGGATG  420

Query  454  GCTCCACTTAGCGTCAAAGCCATACAAAATGTTTCTACTCTTAGTAAGCTTTGA  507
            |||||||||||| |||||| ||| || |||||||||||||||||||||||||||
Sbjct  421  GCTCCACTTAGCCTCAAAGTCATGCACAATGTTTCTACTCTTAGTAAGCTTTGA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5