BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16200.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479073 jgi|Araly1|479073|fgenesh2_kg.3__1774__AT3G16200.1 2405 0.0
> Ahg479073 jgi|Araly1|479073|fgenesh2_kg.3__1774__AT3G16200.1
Length=1434
Score = 2405 bits (1302), Expect = 0.0
Identities = 1392/1436 (97%), Gaps = 3/1436 (0%)
Strand=Plus/Plus
Query 1 AAAAGAGATTAAGAAAGGATATTAATGGAGAGAGGAATGAACAATGGGCAATCACTCTGG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAGATTAAGAAAGGATATTAATGGAGAGAGGAATGAACAATGGGCAATCACTCTGG 60
Query 61 CACTCTCAGTCACCGAAAACTCCAACGACGATGCTAGATCGGGCTCTTTCCTCTCGCCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACTCTCAGTCACCGAAAACTCCAACGACGATGCTAGATCGGGCTCTTTCCTCTCGCCGT 120
Query 121 CCTCACTCCGACGCCGATCTCTCTGCTTCCGGCGAATCCGGAACCGACGAATCTAAAACC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CCTCACTCCGACGCCGATCTCTCTGCTTCCGGCGAATCTGGAACCGACGAATCTAAAACC 180
Query 181 AAACGCCCACACATCTACCTCCTTGCTTCCAATTTCCTTTCTCGGATCGGTCATCAGTGG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAACGCCCACACATCTACCTCCTTGCTTCCAATTTCCTATCTCGGATCGGTCATCAGTGG 240
Query 241 TGGCCTTGtctcattctcgctctcctcttcctcgtccttctcttcctcatctccgttgct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TGGCCTTGTCTCATTCTCGCTCTCCTCTTCCTCGTCCTTCTCTTCCTCATCTCCGTCGCT 300
Query 301 ttccattctcACAGCTTTGTTTGCATCTCCCGCTTCGATCCCGCTGCTCGGATCGGGTTT 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCATTCTCACTGCTTTGTTTGCATCTCCCGCTTCGATCCCGCTGCTCGGATCGGGTTT 360
Query 361 TTCGGTCTTGATGGCCTCGAATCGGATTTTGGTGCCCTAGGTGTTCCTTGGTGCAGATCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGGTCTTGATGGCCTCGAATCGGATTTTGGTGCCCTAGGTGTTCCTTGGTGCAGATCG 420
Query 421 AAACATGGAAAAGAAGTTGAGTGGACATCCAAAGATTTACTCAAGGGTCTAGAAGAGTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACATGGAAAAGAAGTTGAGTGGACATCCAAAGATTTACTCAAGGGTCTAGAAGAGTTT 480
Query 481 GTGCCGATATATGAAACACGACCGATAAAGAACAATATGTATGGAATGGGTTTTGATCAT 540
|||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 481 GTGCCGATTTATGAAACACGGCCGATTAAGAACAACATGTATGGAATGGGTTTTGATCAC 540
Query 541 AGCTTTGGGTTATGGTTCATGGCCCGTTGGCTAAAGCCAGATATGATGATTGAGAGTGGT 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 AGCTTTGGGTTATGGTTCATGGCCCGTTGGCTAAAGCCAGATCTGATGATTGAGAGTGGT 600
Query 601 GCTTTTAAGGGACATTCTACTTGGGTTCTGCGGCAGGCGATGCCAGATACACCTATGATT 660
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTTTTAAGGGACATTCCACTTGGGTTCTGCGGCAGGCGATGCCAGATACACCTATGATC 660
Query 661 TCACTTACTCCTAGGCACCCTGAGAAGTATCTGAGAAAGGGACCTGCTTATGTAGATGGA 720
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TCACTTACTCCCAGGCACCCTGAGAAGTATCTGAGAAAGGGACCTGCCTATGTAGATGGA 720
Query 721 AACTGCACATACTTTGCAGGCAAAGATTTTGTTGATTTTGGAAGTGTTGATTGGAAGAAT 780
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 AACTGCACATACTTTGCTGGCAAAGATTTTGTTGATTTTGGAAGTGTTGATTGGAAGAGT 780
Query 781 GTGTTGAGAAAACATGGTATAACAGATCTCAGCCGTGTAATTGTCTT-TTTCGATGACCA 839
|||||||||||||| || |||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 781 GTGTTGAGAAAACACGGAATAACAGATCTCAGCCGTGTTATTGTCTTCTTT-GATGACCA 839
Query 840 TCAGAATGAACTCAAAAGGCTAAAGCAGGCACTGAAAGCTGGTTTCCGACATCTCATTTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAGAATGAACTCAAAAGGCTAAAGCAGGCACTGAAAGCTGGTTTCCGACATCTCATTTT 899
Query 900 CGAGGATAACTACGATACAGGAACCGGGGATCACTATTCGCTGAGACAGATATGTGATCA 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CGAGGATAACTACGATACAGGAACCGGGGATCACTATTCCCTGAGACAGATATGTGATCA 959
Query 960 GTCACATATAAGAGGAGGCGGACACAGCTGTTTCAAAGACAGCGATGAAGCTAGGATGAG 1019
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 960 GTCATATATAAGAGGAGGCGGCCACAGCTGTTTCAAAGACAGCGATGAAGCTAGAATGAG 1019
Query 1020 ATCAAAGAGGAAGAAGTTCTGGGAAAAAGCAGTTGATACAGAGGAACTGTGCGGACCAGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCAAAGAGGAAGAAGTTCTGGGAAAAAGCAGTTGATACAGAGGAACTGTGCGGACCAGG 1079
Query 1080 GGAAACATGGTGGGGAGTTAAAGGAGAAATGAGAGATGATTTCAACCACACTAACACGCC 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1080 GGAAACATGGTGGGGAGTTAAAGGAGAAATGAGAGACGATTTCAACCACACCAACACGCC 1139
Query 1140 GATCTCATACAATCAGCATTTTCAAAACAGTCGCTACGTTGAATCAATTCTTGACGTCTA 1199
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1140 GATCTCATACAATCAACATTTTCAAAACAGTCGCTACGTTGAATCGATTCTCGACGTCTA 1199
Query 1200 TTGGGAGCTACCTCCGGTCGCAGGACCTTCATTAACCCATCAGTCGCGGTATGACCCTGC 1259
||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1200 TTGGGAGCTACCTCCAGTTGCAGGACCTTCATTAACCCATCAATCGCGATATGACCCAGC 1259
Query 1260 TCGAGCGACTCCACCAATCGTAGCAGATGGCAAGCACCGGTTGTTCCAACGAATCGGTTT 1319
||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 TCGTGCGACTCCACCGATAGTAGCAGATGGCAAGCACCGTTTGTTCCAACGAATCGGTTT 1319
Query 1320 AGGTCGTCTGGATAAGTCAGTGTTCAATGGGTATACTCAAATGGTATACCTTGAGATATC 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGGTCGGCTGGATAAGTCAGTGTTCAATGGGTATACTCAAATGGTATACCTTGAGATATC 1379
Query 1380 CAAGCCCGGGTCATAGAAGATTGTGTGATTCCCGCAAAAGAAGAgtttttgttttt 1435
|||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct 1380 CAAGCCCGGGTCATAGGAGATTGTGTGATTCCTGCAAAAGAAGAGTTTTT-TTTTT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5