BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16200.1 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg479073 jgi|Araly1|479073|fgenesh2_kg.3__1774__AT3G16200.1 2405 0.0 > Ahg479073 jgi|Araly1|479073|fgenesh2_kg.3__1774__AT3G16200.1 Length=1434 Score = 2405 bits (1302), Expect = 0.0 Identities = 1392/1436 (97%), Gaps = 3/1436 (0%) Strand=Plus/Plus Query 1 AAAAGAGATTAAGAAAGGATATTAATGGAGAGAGGAATGAACAATGGGCAATCACTCTGG 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAAGATTAAGAAAGGATATTAATGGAGAGAGGAATGAACAATGGGCAATCACTCTGG 60 Query 61 CACTCTCAGTCACCGAAAACTCCAACGACGATGCTAGATCGGGCTCTTTCCTCTCGCCGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CACTCTCAGTCACCGAAAACTCCAACGACGATGCTAGATCGGGCTCTTTCCTCTCGCCGT 120 Query 121 CCTCACTCCGACGCCGATCTCTCTGCTTCCGGCGAATCCGGAACCGACGAATCTAAAACC 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CCTCACTCCGACGCCGATCTCTCTGCTTCCGGCGAATCTGGAACCGACGAATCTAAAACC 180 Query 181 AAACGCCCACACATCTACCTCCTTGCTTCCAATTTCCTTTCTCGGATCGGTCATCAGTGG 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 AAACGCCCACACATCTACCTCCTTGCTTCCAATTTCCTATCTCGGATCGGTCATCAGTGG 240 Query 241 TGGCCTTGtctcattctcgctctcctcttcctcgtccttctcttcctcatctccgttgct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 TGGCCTTGTCTCATTCTCGCTCTCCTCTTCCTCGTCCTTCTCTTCCTCATCTCCGTCGCT 300 Query 301 ttccattctcACAGCTTTGTTTGCATCTCCCGCTTCGATCCCGCTGCTCGGATCGGGTTT 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCCATTCTCACTGCTTTGTTTGCATCTCCCGCTTCGATCCCGCTGCTCGGATCGGGTTT 360 Query 361 TTCGGTCTTGATGGCCTCGAATCGGATTTTGGTGCCCTAGGTGTTCCTTGGTGCAGATCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTCGGTCTTGATGGCCTCGAATCGGATTTTGGTGCCCTAGGTGTTCCTTGGTGCAGATCG 420 Query 421 AAACATGGAAAAGAAGTTGAGTGGACATCCAAAGATTTACTCAAGGGTCTAGAAGAGTTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAACATGGAAAAGAAGTTGAGTGGACATCCAAAGATTTACTCAAGGGTCTAGAAGAGTTT 480 Query 481 GTGCCGATATATGAAACACGACCGATAAAGAACAATATGTATGGAATGGGTTTTGATCAT 540 |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 481 GTGCCGATTTATGAAACACGGCCGATTAAGAACAACATGTATGGAATGGGTTTTGATCAC 540 Query 541 AGCTTTGGGTTATGGTTCATGGCCCGTTGGCTAAAGCCAGATATGATGATTGAGAGTGGT 600 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 541 AGCTTTGGGTTATGGTTCATGGCCCGTTGGCTAAAGCCAGATCTGATGATTGAGAGTGGT 600 Query 601 GCTTTTAAGGGACATTCTACTTGGGTTCTGCGGCAGGCGATGCCAGATACACCTATGATT 660 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCTTTTAAGGGACATTCCACTTGGGTTCTGCGGCAGGCGATGCCAGATACACCTATGATC 660 Query 661 TCACTTACTCCTAGGCACCCTGAGAAGTATCTGAGAAAGGGACCTGCTTATGTAGATGGA 720 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 TCACTTACTCCCAGGCACCCTGAGAAGTATCTGAGAAAGGGACCTGCCTATGTAGATGGA 720 Query 721 AACTGCACATACTTTGCAGGCAAAGATTTTGTTGATTTTGGAAGTGTTGATTGGAAGAAT 780 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 721 AACTGCACATACTTTGCTGGCAAAGATTTTGTTGATTTTGGAAGTGTTGATTGGAAGAGT 780 Query 781 GTGTTGAGAAAACATGGTATAACAGATCTCAGCCGTGTAATTGTCTT-TTTCGATGACCA 839 |||||||||||||| || |||||||||||||||||||| |||||||| ||| |||||||| Sbjct 781 GTGTTGAGAAAACACGGAATAACAGATCTCAGCCGTGTTATTGTCTTCTTT-GATGACCA 839 Query 840 TCAGAATGAACTCAAAAGGCTAAAGCAGGCACTGAAAGCTGGTTTCCGACATCTCATTTT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCAGAATGAACTCAAAAGGCTAAAGCAGGCACTGAAAGCTGGTTTCCGACATCTCATTTT 899 Query 900 CGAGGATAACTACGATACAGGAACCGGGGATCACTATTCGCTGAGACAGATATGTGATCA 959 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 900 CGAGGATAACTACGATACAGGAACCGGGGATCACTATTCCCTGAGACAGATATGTGATCA 959 Query 960 GTCACATATAAGAGGAGGCGGACACAGCTGTTTCAAAGACAGCGATGAAGCTAGGATGAG 1019 |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 960 GTCATATATAAGAGGAGGCGGCCACAGCTGTTTCAAAGACAGCGATGAAGCTAGAATGAG 1019 Query 1020 ATCAAAGAGGAAGAAGTTCTGGGAAAAAGCAGTTGATACAGAGGAACTGTGCGGACCAGG 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ATCAAAGAGGAAGAAGTTCTGGGAAAAAGCAGTTGATACAGAGGAACTGTGCGGACCAGG 1079 Query 1080 GGAAACATGGTGGGGAGTTAAAGGAGAAATGAGAGATGATTTCAACCACACTAACACGCC 1139 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1080 GGAAACATGGTGGGGAGTTAAAGGAGAAATGAGAGACGATTTCAACCACACCAACACGCC 1139 Query 1140 GATCTCATACAATCAGCATTTTCAAAACAGTCGCTACGTTGAATCAATTCTTGACGTCTA 1199 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1140 GATCTCATACAATCAACATTTTCAAAACAGTCGCTACGTTGAATCGATTCTCGACGTCTA 1199 Query 1200 TTGGGAGCTACCTCCGGTCGCAGGACCTTCATTAACCCATCAGTCGCGGTATGACCCTGC 1259 ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| || Sbjct 1200 TTGGGAGCTACCTCCAGTTGCAGGACCTTCATTAACCCATCAATCGCGATATGACCCAGC 1259 Query 1260 TCGAGCGACTCCACCAATCGTAGCAGATGGCAAGCACCGGTTGTTCCAACGAATCGGTTT 1319 ||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct 1260 TCGTGCGACTCCACCGATAGTAGCAGATGGCAAGCACCGTTTGTTCCAACGAATCGGTTT 1319 Query 1320 AGGTCGTCTGGATAAGTCAGTGTTCAATGGGTATACTCAAATGGTATACCTTGAGATATC 1379 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 AGGTCGGCTGGATAAGTCAGTGTTCAATGGGTATACTCAAATGGTATACCTTGAGATATC 1379 Query 1380 CAAGCCCGGGTCATAGAAGATTGTGTGATTCCCGCAAAAGAAGAgtttttgttttt 1435 |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| Sbjct 1380 CAAGCCCGGGTCATAGGAGATTGTGTGATTCCTGCAAAAGAAGAGTTTTT-TTTTT 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5