BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16210.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929437 jgi|Araly1|929437|scaffold_301894.1 1657 0.0
> Ahg929437 jgi|Araly1|929437|scaffold_301894.1
Length=1132
Score = 1657 bits (897), Expect = 0.0
Identities = 1027/1090 (94%), Gaps = 8/1090 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAAATTTCTCCCGGAAGAATTAGCCATTGAGAT-TCTAGTGAGGCTATCGATGAA 59
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 21 ATGTCGAAATTTCTCCCGGAAGAATTAGCCATTGAGATAT-TAGTGAGGCTATCGATGAA 79
Query 60 GGATCTTGCTCGATTCAGATGCGTCTGCAAGACATGGAGAGATCTTATCAACGACCCTGG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 80 GGATCTTGCTCGATTCAGATGCGTCTGCAAGACATGGAGAGATCTTATCAACGACCGTGG 139
Query 120 ATTCACAGAAACGTACCGAGACATGTCTCCGGCAAAGTTCGTGTCGTTTTACGACAAGAA 179
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 140 ATTCGCAGAAACGTACCGAGACATTTCTCCGGCAAAGTTCGTGTCGTTTTACGACAAGAA 199
Query 180 CTTTTACATGCTTGACGTTGAAGGCAAGCATCCGGTTATTACAAAC----A-A-GCTCGA 233
|||||||||||||||||| |||| ||||||||||||||| |||||| | | ||||||
Sbjct 200 CTTTTACATGCTTGACGTAGAAGACAAGCATCCGGTTATGACAAACCCTCATAAGCTCGA 259
Query 234 TTTCCCCTTGGATCAGTCAATGATCGATGAATCTACATGTGTGCTTCATTGTGATGGGAC 293
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 260 TTTCCCTTTGGATCAGTCAATGATCGATGAATCAACATGTGTGCTTCATTGTGATGGGAC 319
Query 294 TTTATGTGTTACCTTAAAGAATCACACTTTAATGGTTTGGAATCCGTTTTCGAAGCAATT 353
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 320 GTTATGTGTCACCTTAAAGAATCACACTTTCATGGTTTGGAATCCGTTTTCGAAGCAATT 379
Query 354 CAAGATCGTACCAAATCCCGGTATATACCAAGATTCAAACATTCTGGGTTTCGGTTATGA 413
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 380 CAAGATCGTACCAAATCCCGGTATATACCAAGATTCGAACATTCTTGGTTTCGGTTATGA 439
Query 414 CCCGGTTCACGACGATTACAAAGTCGTAACGTTTATCGACCGGCTTGATGTTTCCACGGC 473
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 440 TCCGGTTCACGATGATTACAAACTCGTAACGTTTATCGACCGGCTTGATGTTTCCACAGC 499
Query 474 GCATGTTTTCGAATTTAGAACCGGTTCATGGGGAGAGAGCCTACGTATTTCTTATCCTGA 533
||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 500 GCACGTTTTCGAATTTAGAACCGGTTCATGGAGAGAGAGCCTACGGATAGCTTATCCTGA 559
Query 534 TTGGCATTACAGAGACAGGAGAGGTACATTTTTGGACCAATACCTCTATTGGATTGCGTA 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TTGGCATTACAGAGACAGAAGAGGTACATTTTTGGACCAATACCTCTATTGGATTGCGTA 619
Query 594 CCGGTCTAGTGCTGACCGGTTTATCCTATGCTTTAATCTCTCAACACATGAATACCGAAA 653
|||||||| |||||||||||||||| || |||||||| ||||||| ||||||||||| ||
Sbjct 620 CCGGTCTAATGCTGACCGGTTTATCATACGCTTTAATATCTCAACCCATGAATACCGGAA 679
Query 654 ACTCCCTCTCCCGGTTTACAACCAAGGCGTGACGTCTTCATGGTTAGGCGTTACAAGTCA 713
| ||||||||||||||| ||||| ||||||||||| ||||||| ||||||||| ||||||
Sbjct 680 ATTCCCTCTCCCGGTTTTCAACCGAGGCGTGACGTGTTCATGGCTAGGCGTTAGAAGTCA 739
Query 714 AAAACTCTGTATTACAGAGTATGAAATGTGCAAGAAGGAGATTCGGATTTCGGTTATGGA 773
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 740 AAAACTCTGTATTACAGAGTATGAAACGTGCAAGAAGGAGATTCGGATTTCGGTTATGGA 799
Query 774 GAAAACCGGATCATGGAGCAAGATTATAAGCCTTTCAATGTCGAGTTTCATCTCTGTACA 833
||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 800 GAAAACCGGGTCATGGAATAAGATTATAAGCCTTTCAATGTCGAATTTCATCTCTGCACA 859
Query 834 AGATCGTATCTACGATTATCAAGTCGAATTCGTGTCGTTTACTAGAAAGAACGATCTCGT 893
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 860 AGATCGTATCTACGATTATCAAGTCGAATTCGTGGCGTATACTAAAAAGAACGATCTCGT 919
Query 894 CGTAACATTCACTGGATACAACGATCATTTCGAGATGGAACCTGAAGAGCGTACGAAGAA 953
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 920 CGTAACATTCACTGGATACAACGATAATTTGGAGATGGAACCTGAAGAACGTACGAAGAA 979
Query 954 GAAGATGTTCTTGTACAAAACCGGAAACGAGAGATCTGAAGAAGTCCGGTTCTGTAACCC 1013
|||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| |
Sbjct 980 GAAGGTGTTCTTGTACAAAACCGGAGACGAGACATCGGAACAAGTCCGGTTCTGTAACTC 1039
Query 1014 TCTAGCCGGGTTACGGTTTCTCTGTGAATGTGTGGAGACTCTTAAGATTGTTAATCGCAT 1073
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1040 TCTAGCCGGGTTACGGTTTCTCTGTGAATGTGTGGAGACTCCTAAGATTATTAATCGCAT 1099
Query 1074 ATTTATTTGA 1083
||||||||||
Sbjct 1100 ATTTATTTGA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5