BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16220.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479075 jgi|Araly1|479075|fgenesh2_kg.3__1776__AT3G16220.1 1216 0.0
> Ahg479075 jgi|Araly1|479075|fgenesh2_kg.3__1776__AT3G16220.1
Length=852
Score = 1216 bits (658), Expect = 0.0
Identities = 773/827 (93%), Gaps = 13/827 (2%)
Strand=Plus/Plus
Query 84 TTTCGTGTATGAAAACTGAGGCGTATCAAGGCTATGGAGAATTTAAATCATAAGTGGGAT 143
|||||||||||||||||||||||| |||||||||||||||| | | | | ||| ||
Sbjct 37 TTTCGTGTATGAAAACTGAGGCGTGTCAAGGCTATGGAGAA--T---T--T-A-TGGAAT 87
Query 144 CGTTGTTCCTCTTCTCATCAAACTCCTCTTTCTTTCAAAGGCAATCAGAAGCAGATTGGA 203
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 88 CGTTGTTCCTCTTCTCATCAAACTCCTCTTGCCTTCAAAGGCAATCAGAAGCAGACTGGA 147
Query 204 CAAGG-TCAGAGAGAAGTGTTCACACATTTTGTGTCACTTCCATTAGCCATATACCCTGA 262
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 C-AGGCTCATAGAGAAGTGTTCACACATTTTGTGTCACTTCCATTAGCCATATACCCTGA 206
Query 263 CTTGACGAAAAATATCGAGGCTTTTCAGAATTCTGTATTGGGAAACAATGATAAGGATCC 322
|||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 207 GTTGAAGAAAAATATTGAGGCTTTTCAGAATTCTGTATTGGGTAACAATGATAAGAATCC 266
Query 323 ATTGAAGTTTCAGAGTACTTTAGCTGAAATGGGAATAGAAAAATCGATCTTTGTAACTCC 382
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 267 ATTGACGTTTCAGATTACTTTAGCTGAAATGGGAATCGAAAAATCGATCTTTGTTTCGCC 326
Query 383 CAAAACTTTCCATTTGACTGTGGTTATGTTAAAGTTAGAGAACAATGAATCTGTGGTTAA 442
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 327 CAAAACTTTCCATTTGACTGTGGTTATGTTGAAGTTAGAGAACAATGAATCTGTGGTTAA 386
Query 443 AGCTCAGAATATCCTTCAGAGTATTTTTTCTAATGTGAGGCAAGCTTTGAAAAACAGACC 502
|||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||
Sbjct 387 AGCTCAGAATATCCTTAAGAGTATTTGTTCTAATGTGAGGCAAGCTTTGAAGGACCGACC 446
Query 503 TGTCTTCATAAGACTCAGAGGATTGGAATGTATGAGTGGATCTTTAGACAAAACTCGCGT 562
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||
Sbjct 447 TGTCTTCATAAGACTCAGGGGATTGGATTGTATGAATGGATCTTTAGACAAAACCCGCGT 506
Query 563 TCTCTATGCTCCTGTTGAAGAAGTTGGTCGTGAGGGCCGCCTGCTAAATGCTTGTCATGT 622
|||||||| |||||||||||||||||| | ||| || |||||||||||||||||||||||
Sbjct 507 TCTCTATGTTCCTGTTGAAGAAGTTGGGCATGAAGGTCGCCTGCTAAATGCTTGTCATGT 566
Query 623 TATCATTGATGCATTTGAGAATGTTGGATTTGCTGGTAAAGATGCAAAGTCACGCTTGAA 682
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 567 TATCATTGATGCATTTGAGAATGCTGGATTTGCTGGTAAAGACGCAAAGTCACGCTTGAA 626
Query 683 GCTACACGCCAC-GTTGATGAATGCAAGCTACAGAAAAGATAAAAGCAAAAAGATGGATA 741
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GCTACACGCCACAG-TAATGAATGCAAGCTACAGAAAAGATAAAAGCAAAAAGATGGATA 685
Query 742 CTTTTGATGCTCGAGAGATACACAAAGAGTTTGAGAACAAGGATTGGGGAACATATCTAA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CTTTTGATGCTCGAGAGATACACAAAGAGTTTGAGAACAAGGATTGGGGAACATATCTAA 745
Query 802 TCAGAGAAGCTCACATCTCACAACGTTATAAGTATGACCCCAATGGCTACTTCCATTGCT 861
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 746 TCAGAGAAGCTCATATCTCACAACGCTATAAGTATGACCCCAATGGCTACTACCATTGCT 805
Query 862 GCGCTTCACTACCTTTTCCACATAAGTGACATTGACAACGATCAAAT 908
| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 806 GTGCTTCACTACCTTTTCCACATAAGTGACAGTGAAAACGATCAAAT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5