BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16230.2
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341749 jgi|Araly1|341749|fgenesh1_pg.C_scaffold_3001512 2025 0.0
> Ahg341749 jgi|Araly1|341749|fgenesh1_pg.C_scaffold_3001512
Length=1389
Score = 2025 bits (1096), Expect = 0.0
Identities = 1302/1393 (93%), Gaps = 47/1393 (3%)
Strand=Plus/Plus
Query 292 ATGTTCGCTTACAGGACTCTGTTTAGGATTGACCGTGTATTTGGGTTTACGAGTAGATGT 351
||||| |||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 1 ATGTTAGCTTGCAGGACTCTGTTTAGGATTGATCGTGTGTTTGGGGTTACGAGTAGATGT 60
Query 352 TTTCAATCGAAACCGGAATCTTTTAGTATCCTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 411
|||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 TTTCTATCGAAAACGGAATCTTTAAGTATCTTGAGCTTTAGGGGAAGTGAGAAGAGTGCC 120
Query 412 ATGGATGGATAT-AAGAAGCAGAAGATGGTAAAT-TTAGTG-TGGAGACCC--------- 459
|||||||||| | ||||||||||||||| | ||| || || | | |||
Sbjct 121 ATGGATGGAT-TCAAGAAGCAGAAGATGTTTAATCGTA-TGATCCA-TCCCGGTTTTGAA 177
Query 460 A-TCTCCA-C-TC-AAACCTCT-TCAGTTAT-TG-CTGAAGCTGGAAATGAAGTCCAAGA 512
| | |||| | || || | ||| | || | | |||||||||||||||||||||||
Sbjct 178 AGTTTCCACCTTCTGTGGCTTTCTCA-TGATGAGACAGAAGCTGGAAATGAAGTCCAAGA 236
Query 513 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATT----GA--AG-G-A 564
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 237 AGTAGCTCAGTGTAGCAAATCAAGTGATGTTTCTAAGGAAGTTATTCAAGGAGGAGTGAA 296
Query 565 -GAGACAGCTTCAGTTGTTTCAGCTGGAAAGCATTCAGTTTCTCTTGAGGTTGGGGCTTC 623
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TGAGACGGCCTCAGTTGTTTCAGCTGGAAATCATTCAGTTTCTCTTGAGGTTGGGGCTTC 356
Query 624 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACGACGCAGATGAAACTTGAAGAGGAAAT 683
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 357 TTTGATTAAGTTCATTAGAGGGAAAGAAGGAACTACACAGATGAAACTTGAAGAGGAAAT 416
Query 684 GGGAGTGAAGATCATTCTTCCATCATCAAGGAACAAAGATCATATCAGCATTGAAGGCGG 743
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 417 GGGAGTGAAGATCATTCTTCCATCATCAAGGGACGAAGATCATATCAGCATTGAAGGCGG 476
Query 744 TTCAGTGGATTGTGTGACTAAAGCTTCAAAAAGAATAGCAACCATTATCGATGAGGTTGT 803
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 TTCAGTGGATTGTGTGACTAAAGCTTCAGAAAGAATAGCAACCATTATCGATGAGGTTGT 536
Query 804 AAGGAGTCCAAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 863
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGGAGTCCGAGTCTCGACTACTCACACTTTGTATCACTTCCATTAGCCATACATCCTGA 596
Query 864 GTTAGTGGACAAGCTAGTGAATTTTCAGAATTCTATCCTCGGGATCCATAGCATAGCTAG 923
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 GTTAGTGGACAAGCTAGTGAATTTTCAGAACTCTATCCTCGGGATCCATAGCATAGCTAG 656
Query 924 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGATAAGCAAGACGACCAAGCTAATAGAGCAACCACAAGTGTGGCAGTTGATCTAAAAGC 716
Query 984 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAATAGTGAAACAAACCAGGTCAATGTGGGTATCAAGAGCATACCAATTGTCAGTTACCC 776
Query 1044 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTAGGAATTGAAAAGTCCATATT 1103
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 GCCTAAGGCCAAATCAAAGTCATCTACTTTATTGGACTTGGGAATTGAAAAGTCCATATT 836
Query 1104 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TATTAAGCCAAGTACTTTTCACTTGACTGTGGTTATGCTGAAGTTATGGAACAAAGATCG 896
Query 1164 TGTCAATGCAGCGTGTGATGTTCTGAAGAGTATATTTCCTAGTGTGATGGATGCTTTGGA 1223
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 897 TGTCAATGCAGCGCGTGATGTTCTGAAGAGTATATCTCCTAGTGTGATGGATGCTTTGGA 956
Query 1224 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAACAAACCAGTATTCATTAGACTTAAAGGATTGGATTGTATGAGAGGACCATTAGACAA 1016
Query 1284 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GACTCGTGTTCTCTATGCTCCTGTTGAAGAAATTGGTGATGAAGGCCGGCTTTTACGTGC 1076
Query 1344 TTGTC--A----A---------GTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1388
||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTGTCGTATCCTAATTTTTAAAGTTATTACTGATGCATTTGTGAAAGCTGGGCTTGTTCT 1136
Query 1389 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CGAGAAAGATGCAAAGCAAAGCTTGAAGCTGCATGTGACCGTGATGAATGCGAGGCACAG 1196
Query 1449 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GAAAAGGAGAAAGAACAATAAGAAGAAGATGGAGACGTTTGATGCAAGAGAGATACACAA 1256
Query 1509 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCAAGAAGCTCATCTCTCACAGCG 1568
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 ACAGTTTGGAAACGAAGACTGGGGAGAATATCTGATCCGAGAAGCTCATCTCTCACAGCG 1316
Query 1569 TTTTGTGTTCGACCAGAACGGTTATTACCGTTGCTGTGGTTCAATACCATTTCCAGGAGA 1628
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 1317 TTTTGTGTTCGACCAGAACGGTTTTTACCGTTGCTGTGCTTCCCTACCATTTCCAGGAGA 1376
Query 1629 ACAGAGAGCCTGA 1641
||| | |||||||
Sbjct 1377 ACACACAGCCTGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5