BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16240.1
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479077 jgi|Araly1|479077|fgenesh2_kg.3__1778__AT3G16240.1 1615 0.0
Ahg493143 jgi|Araly1|493143|fgenesh2_kg.7__2576__AT4G17340.1 276 3e-73
> Ahg479077 jgi|Araly1|479077|fgenesh2_kg.3__1778__AT3G16240.1
Length=1064
Score = 1615 bits (874), Expect = 0.0
Identities = 990/1045 (95%), Gaps = 12/1045 (1%)
Strand=Plus/Plus
Query 2 TATGCATGGATACATGAACGATA--CTCCTATATAAAGAGAACAGCATTCAAAAGGTCTT 59
|||||||||||| |||||| | | ||||||||||||||||| ||||| |||||||||||
Sbjct 1 TATGCATGGATATATGAAC-AAAGGCTCCTATATAAAGAGAAGAGCATGCAAAAGGTCTT 59
Query 60 ATCATCTTCTTCACTAAACaaaaaaaaaCCCTTCAAAACATTTCCTTATTCTTTCTTCTT 119
||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||||||
Sbjct 60 ATCATCTTCTTCACTAAGC--AAAAAAA-CCTTCAAAACATTTCCTTCTTCTTTCTTCTT 116
Query 120 CATCTACAACAATGGCTGGAGTTGCCTTTGGTTCCTTTGATGATTCATTCAGCTTGGCTT 179
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 117 CATCTACTACAATGGCTGGAGTTGCCTTTGGTTCTTTTGATGATTCCTTCAGCTTGGCTT 176
Query 180 CTCTAAGAGCTTACCTCGCTGAGTTCATCTCCACTTTACTCTTTGTTTTCGCTGGTGTTG 239
| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 177 CGCTTAGAGCTTACCTTGCTGAGTTCATCTCCACTTTGCTCTTTGTTTTTGCTGGTGTTG 236
Query 240 GCTCTGCCATTGCCTAC-G--CAAAGCTGACGTCGGACGCTGCTCTTGATACACCGGGAC 296
||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 237 GCTCTGCCATTGCCTACGGTTCGAAGCTGACGTCGGACGCTGCTCTTGATACGCCGGGAC 296
Query 297 TAGTGGCCATCGCGGTTTGTCATGGTTTTGCTCTCTTCGTGGCCGTTGCAATCGGAGCCA 356
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 297 TAGTGGCCATCGCGGTTTGCCATGGTTTTGCTCTCTTCGTAGCGGTTGCAATCGGAGCCA 356
Query 357 ACATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGTCAAA 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 ACATCTCCGGTGGCCATGTGAATCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGTCAAA 416
Query 417 TCACAGTCATCACCGGAGTTTTCTACTGGATCGCTCAGCTTCTCGGCTCCACCGCCGCTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCACAGTCATCACCGGAGTTTTCTACTGGATCGCTCAGCTTCTCGGCTCCACCGCCGCTT 476
Query 477 GTTTCCTCCTTAAATACGTCACCGGTGGATTGGCGGTTCCAACCCACAGCGTTGCGGCTG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 GTTTCCTCCTTAAATACGTCACCGGTGGATTGGCGGTTCCAACCCACAGCGTTGGGGCTG 536
Query 537 GACTAGGATCGATAGAAGGAGTAGTGATGGAGATCATCATCACCTTCGCTTTGGTCTACA 596
|||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 GACTAGGAGCGTTAGAAGGAGTAGTGATGGAGATCATCATCACCTTTGCTTTGGTCTACA 596
Query 597 CTGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCGCTCCTCTCG 656
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCGCTCCTCTCG 656
Query 657 CCATTGGTCTTATCGTTGGTGCCAACATCCTCGCCGCCGGTCCATTCTCCGGTGGATCCA 716
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 657 CCATCGGTCTTATCGTTGGTGCCAACATTCTCGCCGCTGGTCCATTCTCCGGTGGATCCA 716
Query 717 TGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCTGCCGGAGACTTCTCTGGTCACTGGG 776
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 717 TGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCGGCCGGAGACTTCTCTGGTCATTGGG 776
Query 777 TCTACTGGGTTGGACCACTCATCGGTGGTGGACTTGCCGGACTTATCTACGGAAATGTCT 836
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 777 TCTACTGGGTGGGACCACTCATCGGTGGTGGTCTTGCTGGACTTATCTACGGAAATGTCT 836
Query 837 TCATGGGTTCTTCCGAACATGTTCCTCTTGCTTCTGCTGATTTCTAAGGAAACAAGTGAT 896
||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 837 TCATGAGTTCTTCCGAACATGCTCCTCTTGCTTCTGCTGATTTCTAAGCAAACAAGTGAT 896
Query 897 GATTCTTGATTCATGTTTCTGTGTTTGGTTACTTTGCCTCGATCTTTCTTGTTTTGTTTG 956
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 GATTCTTGATTCATGTTTCTGTGTTTGGTTACTTTGTCTCGATCTTTCTTGTTTTGTTTG 956
Query 957 GAGTTTGGTCCGGTTTCGTTGTAATTTTTATCCAATTTGTATGAATATTATTTAATGGAT 1016
|| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 957 GACTTTAATCCGGTTTCGTAGTAATTTTTATCCAATTTGTATGAATATCATTTAATGGAT 1016
Query 1017 GGCTGTTT-TG-GTT-ATAAATTAA 1038
|||||||| | ||| |||||||||
Sbjct 1017 GGCTGTTTATTTGTTTATAAATTAA 1041
> Ahg493143 jgi|Araly1|493143|fgenesh2_kg.7__2576__AT4G17340.1
Length=960
Score = 276 bits (149), Expect = 3e-73
Identities = 387/500 (77%), Gaps = 24/500 (5%)
Strand=Plus/Plus
Query 353 GCCAACATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGT 412
||||||||||| ||||| || | ||||| ||||| || | || || || |||||||
Sbjct 278 GCCAACATCTCTGGTGGACACCTTAACCCTGCCGTGACACTCGGCCTCGCCATCGGTGG- 336
Query 413 CAA-ATCACAGTCATCACCGGAGTT-TTCTACTGGATCGCTC-A-GCTTCTCGGCTCCAC 468
||| |||||||| || ||||| || ||||||||||| |||| | || || |||||||
Sbjct 337 CAACATCACAGTAATAACCGG-TTTCTTCTACTGGATTGCTCAATGC--CTTGGCTCCAT 393
Query 469 CGCCGCTTGTTTCCTCCTTAAATACGTCACCGGTGGATTG-GCGGTTCCAACCCACAGCG 527
|| ||||||| ||||||| | ||| ||| ||| | || || || || || | |
Sbjct 394 CGTCGCTTGTCTCCTCCTCGTCTTCGTGACCAATGGCGAGAGC-GTACCGACTCATGGAG 452
Query 528 TTGCGGCTGGACTAGGATCGATAGAAGGAGTAGTGATGGAGATCATCATCACCTTCGCTT 587
|||| || || ||||| | || |||||| ||||||||||||| | | ||||| |||
Sbjct 453 TTGCAGCCGGTTTAGGAGCTATTGAAGGACTAGTGATGGAGATTGTGGTGACCTTTGCTC 512
Query 588 TGGTCTACACTGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCG 647
|||| ||||| |||||||| || || |||||||| ||||| || || ||||| ||||| |
Sbjct 513 TGGTGTACACAGTCTACGCTACAGCGGCTGATCCAAAGAAAGGATCACTCGGGACCATAG 572
Query 648 CTCCTCTCGCCATTGGTCTT-ATCGTTGGTGCCAACATCCTCGCCGCCGGTCCATTCTC- 705
|||| | || || ||| || |||||||||||||||||||||||||||||||| || |
Sbjct 573 CTCCGATTGCTATCGGT-TTCATCGTTGGTGCCAACATCCTCGCCGCCGGTCCCTT-TAG 630
Query 706 CGGTGGATCCATGAACCCAGC-ACGTTCCTTTGGACCAGCTGTTG-CTGCCGGAGACTTC 763
|||||| || |||||||| || | || | |||||||||||||||| | || || ||||||
Sbjct 631 CGGTGGTTCGATGAACCCGGCCAGGT-CATTTGGACCAGCTGTTGTCAGC-GGTGACTTC 688
Query 764 TCTG-G-TCACTGGGTCTACTGGGTTGGACCACTCA-TCGGTGGTGGACTTGCCGGACTT 820
||| | | | ||| |||||||||| || ||||| | ||||||||| ||| ||||||||
Sbjct 689 TCTCAGAT-A-TGGATCTACTGGGTGGGCCCACT-AGTCGGTGGTGCACTCGCCGGACTC 745
Query 821 ATCTACGGAAATGTCTTCAT 840
|||||||| | ||||||||
Sbjct 746 ATCTACGGCGACGTCTTCAT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42697667040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5