BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16250.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929441 jgi|Araly1|929441|scaffold_301898.1 1033 0.0
> Ahg929441 jgi|Araly1|929441|scaffold_301898.1
Length=656
Score = 1033 bits (559), Expect = 0.0
Identities = 618/647 (96%), Gaps = 2/647 (0%)
Strand=Plus/Plus
Query 76 AAAAAAGA--AGAACAAGACTATGGGAAGTGTACAGTTGAGTGGTTCCGGCCTAGTAGCT 133
|||||||| ||| |||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1 AAAAAAGATCAGAGCAAGACTATGGGAAGTGTACAGTTGAATGGTTCAGGCTTAGTAGCT 60
Query 134 TCTCTACCTCCAAATCATAGCTTTAGCCACAAGACCAAACTTAATAAGCCAAATTCGTAC 193
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||| || |||
Sbjct 61 TCTCTACCTCCAAATCATAGCTTTAGCCACAAAACCAAACTTAGTAATCCAAAGTCATAC 120
Query 194 TTCTTTCGCTCAAAACACAATGCCGCAAGAACCAAAACCGTCCGAGCCATAAGCACCGCA 253
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTGCGCTCAAAACACAATGCCGCCGGAACCAAAACCGTCCGAGCCATAAGCACCGCA 180
Query 254 CCAGCGAGCCAGCCTCCAGCCGCTGATGAGCCCGACGAACCTCCTGCTGTCGATTTTGCG 313
||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 181 CCAGCGAGCCAGCCTCCAGCCGCAGATGAGTCTGACGAACCTCCTGCTGTCGATTTTGCG 240
Query 314 TTCGTCCATTCGGTGTTGTTGCCGGACGGGACACCGGACGTACATTGGAGAAGAGCGAAC 373
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTCATCCATTCGGTGTTGTTGCCGGACGGGACACCGGACGTGCATTGGAGAAGAGCGTGT 300
Query 374 GGTGGACAGAAACTAAGAGACATAATGTTGGATTCTAACATCGAACTCTATGGTCCTTAT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGGACAGAAACTAAGAGACATAATGTTGGATTCTAACATCGAACTCTATGGTCCTTAT 360
Query 434 AGTAAGCCTTTGTCAAACTGCGCAGGAGTAGGAACTTGCGCTACTTGCATGGTCGAGATT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTAAGCCTTTGTCAAACTGCGCAGGAGTAGGAACTTGCGCTACTTGCATGGTCGAGATT 420
Query 494 GTAAATGGAAAGGAGCTTCTAAATCCGCGAACTGATATTGAGAAGGAGAAACTCAAAAGG 553
|| ||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||
Sbjct 421 GTTAATGGAAAGGAGCTTTTAAATCCACGAACAGAGATTGAGAAGGAGAAACTCAAAAGG 480
Query 554 AAACCAAAAAATTGGAGACTAGCTTGTCAAACCAACGTGGGAAATCCAGATTCTACCGGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACCAAAAAATTGGAGACTAGCTTGTCAAACCAACGTGGGAAATCCAGATTCTACCGGA 540
Query 614 TTGGTTGTCATACAACAATTGCCAGAGTGGAAAGCTCATGAGTGGAACATCCCTAAGAAT 673
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TTGGTTGTCATACAACAATTGCCAGAGTGGAAAGCTCATGAATGGAACATCCCTAAGAAT 600
Query 674 ATACCTAATGACGATGATCTCGAAACTTCTACTTGAAACCATCCATT 720
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 ATACCTAATGACGATGATCTCGAAACTTCTACGTGAAACCATCCATT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5