BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16260.1
Length=2938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341756 jgi|Araly1|341756|fgenesh1_pg.C_scaffold_3001519 4479 0.0
Ahg474332 jgi|Araly1|474332|fgenesh2_kg.1__4286__AT1G52160.1 1391 0.0
> Ahg341756 jgi|Araly1|341756|fgenesh1_pg.C_scaffold_3001519
Length=2841
Score = 4479 bits (2425), Expect = 0.0
Identities = 2690/2818 (95%), Gaps = 17/2818 (1%)
Strand=Plus/Plus
Query 42 CCTCAAAACCTAAGCCTTTTCGGATTTTCTCCTCTCAAGTCTTCTTCGTTCGCTCTTATT 101
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 34 CCTCAAAACCTAAGCCTTTTCGGATTTTCTCCACTCAAGTCTTCTTCTTTCGCGCTTTTT 93
Query 102 CTCAGACCCTTTTCTCTCTACCCACCAATCTTCGCTTCTTCTTCTCCG-GCTCCGAGTCG 160
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 94 CTCAGACCCTTTTCTCTCTACCCACCAATCTTCGCTTCTTCTTCCCCGAG-TCCGAGTCG 152
Query 161 TCGTCCTCCTCGCACCGCCGGTTACCGTCGCAGTGGCCC-T-TC-TCCTCCGAGACGCAA 217
||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||
Sbjct 153 TCGTCCTCCTCGCACCGCCGGTTACCGTCGCAGTGGCCCTTCTCATCCTCCAAGACGCAA 212
Query 218 ATGGAGTAGTTTCGAGGAGCAGAAGAGAAAAGGTAGGTCTCCGATGGAGAAAGATAAAGC 277
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 213 GTGGAGTAGTTTAGAAGAGCAGAAGAGAAAAGGTAGGTCTCCGATGGAGAAAGAGAAAGC 272
Query 278 TATTAGCTTTAATCACTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATT 337
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TAGTAGTTTTAATCATTCTTCTGATTCTTTCGAGTTTAATAAGAGAAGAGCTGAGGGATT 332
Query 338 GGATAAGGTCGATAAGCCTAAGAAGAATCTCAAGAGGAATACTCGCACCCTTAACCCTAC 397
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 333 GGATAAGATCGATAAGCCTAAGAAGAATCTCAAGAGGAATACTCGCACCCTTAATCCTAC 392
Query 398 CAATACCATCGCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACGTCACC 457
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 393 CAACACCATTGCCTATGTTCAGATCCTTGGGACTGGAATGGATACACAGGATACATCACC 452
Query 458 TTCTGTATTACTCTTCTTTGACAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCA 517
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 TTCTGTATTACTCTTCTTTGATAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCA 512
Query 518 ACGTTTTTGTACTGAACATAAAATTAAGTTATCAAAGGTAGATCATATATTTTTGTCTCG 577
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 513 ACGTTTTTGTACAGAACATAAAATTAAGTTATCAAAGGTAGATCATATCTTTTTGTCTCG 572
Query 578 TGTGTGCTCAGAGACAGCAGGCGGGCTTCCAGGTCTTCTACTGACCCTAGCTGGTATCGG 637
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 573 TGTGTGCTCAGAGACAGCAGGTGGGCTTCCAGGTCTTCTACTGACTCTAGCTGGTATCGG 632
Query 638 GGAACAAGGACTATCCGTCAACGTATGGGGTCCTTCAGATCTTAAGTATTTGGTTGATGC 697
||| ||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 633 TGAAGAAGGACTATCCGTAAACGTGTGGGGCCCTTCGGATCTTAAGTATTTAGTTGATGC 692
Query 698 TATGAGGTCATTTATCCCTCGTGCTGCCATGGTTCATACAAGAAGTTTTGGTCCATCATT 757
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 693 TATGAGGTCATTTATTCCTCGTGCTGCAATGGTTCATACAAGAAGTTTTGGTCCATCGTT 752
Query 758 GAATATATCTGACTCTGCGCCTCAGATTGGCTTAAGTAAACCCAAAGATGATGCCTATGT 817
||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 753 GAATACATCTGACTCCACGCCTCAGAGTGGCTTAAGTAAACCCAAAGATGATGCCTATGT 812
Query 818 TCTTGTGGATGACGAAGTTGTGAAAATATCCGCCATTCTCCTAGAACCAAGTCGCTTAGA 877
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 813 TCTTGTGGATGACGAAGTTGTGAAAATCTCCGCCATTCTCTTAGAACCAAGTCACTTAGA 872
Query 878 GGAATCTGGCAGCAAACCTGGTGAAACAGCAGTTATATATGTATGTGAATTACCTGAAAT 937
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 873 AGAATCCGGCAGCAAACCTGGTGAAACGGCAGTTATATATGTATGTGAATTACCTGAAAT 932
Query 938 CAAAGGAAAGTTTGATCCAAAGAAGGCCATGGCTCTTGGATTGAGAGCTGGTCCAAAGTA 997
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 933 CAAAGGAAAGTTTGACCCAAAGAAGGCCATGGCTCTTGGACTGAGAGCTGGTCCAAAATA 992
Query 998 CAGTTATCTTCAGTCTGGACAGTCAGTCAAGTCAGATTTTAAAGATATTACGGTTCATCC 1057
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 CAGTTATCTTCAATCTGGACAGTCAGTCAAGTCAGATTTTAAAGATATTACGGTTCATCC 1052
Query 1058 GAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGTTGTTTTGCTTGTGGATTGTCCAAC 1117
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1053 GAGTGATGTGATGGGACCTTCAGTTCCTGGTCCTGTTGTTTTGCTTGTGGACTGTCCAAC 1112
Query 1118 AGAGTCACATGCCGAGGAACTGCTATCTATCCCGTCTATGAAGACTTATTATTCATGTCT 1177
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 1113 AGAGTCACATGCCGAGGAACTGCTATCTATACCGTCTATGAAAAGTTATTATTCATGTCT 1172
Query 1178 TGACAATTCAACAGATGGAGCTAAGCTTGTTAATTGTATTATTCATCTAAGTCCAGCTTC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGACAATTCAACAGATGGAGCTAAGCTTGTTAATTGTATTATTCATCTAAGTCCAGCTTC 1232
Query 1238 TGTAACAAATAGTTCTACATACCGAAGCTGGATGAAGAGATTCCATTCTGCCCAGCACAT 1297
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1233 TGTAACAAATAGTTCTACATACCAAAGCTGGATGAAGAGATTCCGTTCTGCCCAGCACAT 1292
Query 1298 TCTCGCTGGACATGAAGCGAAGAATATGGAGTTTCCAATCCTGAGAGCCAGTTCTAGAAT 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TCTCGCTGGACATGAAGCGAAGAATATGGAGTTTCCAATCCTGAGAGCCAGTTCTAGAAT 1352
Query 1358 CACAGCCAGACTTAACTATTTATGTCCACAGTTCTTCCCAGCTCCTGGATTTTGGTCTCA 1417
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1353 CACAGCCAGACTTAACTATTTATGCCCACAGTTCTTCCCTGCGCCTGGATTTTGGTCTCC 1412
Query 1418 TCAACATGATAATAACTCGATAAACCCCACTTCTTTGAGCAAGTGCTTCGATTCGAATCT 1477
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1413 TCAACATGTTAATAACTCAATAAACTCCACTTCTTTGAGCAAGTGCTTCGATTCGAATCT 1472
Query 1478 TGGTGAAAGCATTTCTGCTGAAAATCTCCTCAAGTTCACTTTGCGTCCACATGGTAATCT 1537
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1473 TGGTGAAAGCATTTCCGCTGAAAATCTCCTCAAGTTCACTTTGCGTCCACATAGTAATCT 1532
Query 1538 TGGGGTAGACAGATCTAGTATCCCTAGTCGATTAACAGCTTTACGAGTGATGGATGAGCT 1597
||||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1533 TGGGGTAGACAGAACTTGTATCCCTAGTCGATTGACATCCTTACGAGTGATGGATGAGCT 1592
Query 1598 TCTTTCAGAAATTCCTGAAATCAGCAGTAAGACCGAAGAAATCAAGCAGTTATGGAATGG 1657
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1593 TCTTTCAGAAATTCCTGAGATCAGCAGTAAGACCGAAGAAATCAAGCGGTTATGGAATGG 1652
Query 1658 ACAACACAACAAGATGATGATCGAAGAGCCATGGCTGGGTGAAAGCACTGTTCCAAGCTG 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 ACAACACAACAAGATGATGATCGAAGAGCCATGGCTGGGTGAAAGCACTGTTCCAAGCTG 1712
Query 1718 TCTTGAAAACATTAGAAGAGACGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCA 1777
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TCTTGAAAACATTAGAAGAGATGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCA 1772
Query 1778 ACCCTCAAAATACCGAAATGTCACGGCAATTTACATCGACCTATTCTCTAGAGGCAGTAT 1837
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1773 ACCCTCAAAATACCGAAATGTCACCGCAATTTACGTCGACCTATTCTCTAGAGGCAGTAT 1832
Query 1838 TCTCTTGGATTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGAAGATATGGTTTAGAAGG 1897
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1833 TCTCTTGGATTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGGAGATATGGTTTAGAAGG 1892
Query 1898 AGCTGATGAAGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCA 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 AGCTGATGAAGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCA 1952
Query 1958 CCATACGGGTCTTGCAAGAATCCTTGCTCGCAGACGTGAGCTTTTGAAAGGATTGGCTCA 2017
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 1953 CCATACGGGTCTTGCAAGAATCCTTGCTCGTAGACGTGAGCTTCTGAAAGGAGTGGCTCA 2012
Query 2018 TGAGCCAGCAATTGTGGTTGGACCGAGATCGCTTAAGAACTTTCTCGATGCATATCAAAG 2077
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2013 TGAGCCAGCAATTGTGGTTGGACCGAGACCGCTTAAGAACTTTCTCGATGCATATCAAAG 2072
Query 2078 ACTTGAGGATTTAGATATGGAGTTTCTCGACTGCAGGAACACCACAACAACATCTTGGGC 2137
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 2073 ACTCGAGGATTTAGATATGGAGTTTCTTGATTGCAGGAACACCACAACAACTTCTTGGGC 2132
Query 2138 TTCTGTAGAAACCAGCCGCCCTGAGAAAAATACCAGTAGCGGCAATGCAGAGGGTTCTTT 2197
|||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2133 TTCTCAAGAAACCACCCGCCCTGAGAAAAATACCAATAGCGGTAATGCAGAGGGTTCTTT 2192
Query 2198 GTTCAGTAAAGGAAGTCTAATGCAGAGTATATATAAAAGACCGAGCAGCCCACTGACAGA 2257
||||||||||||||||| |||||||||||| ||||||||| | || | ||||||||| ||
Sbjct 2193 GTTCAGTAAAGGAAGTCCAATGCAGAGTATTTATAAAAGATCAAGTACCCCACTGACCGA 2252
Query 2258 CAATTCTTCAGCTTTACCATTCTTGAAGAAACTGAAAAAAGTCCTCGGCGAAATGGGGTT 2317
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 2253 CAATTCTTCAGCTTTACCATTCTTGAAGAAACTGAAAAATGTCCTAGGCGAAATGGGTTT 2312
Query 2318 GGAGCATTTGATTAGCTTTCCTGTTGTGCATTGCCCTCAAGCCTTTGGGGTT-TCGTTAA 2376
|||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2313 GGAGGATTTGATTAGCTTTCCTGTTGTGCATTGCCCTCAAGCCTTTGGGGTTGTTGT-AA 2371
Query 2377 AAGCAGCAGAAA-GAAAAAACATTGCCGGAGATGAGATTCCGGGGTGGAAAATGGTTTAC 2435
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2372 AAGCAGC-GAAAAGAAAAAACATTGCCGGAGATGAGATTCCTGGGTGGAAAATGGTTTAC 2430
Query 2436 TCGGGAGACACAAGGCCTTGTCCTGAGATGGTTGAAGCTTCAAAAGGAGCAACAGTTCTT 2495
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2431 TCAGGTGACACAAGGCCTTGTCCTGAGATGGTTGAAGCTTCAAAAGGAGCAACTGTTCTT 2490
Query 2496 ATACATGAGGCGACGTTTGAGGATGCGTTGGTAGAAGAAGCTGTGGCTAAAAACCATAGC 2555
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2491 ATACATGAGGCGACATTTGAGGATGCGTTGGTAGAAGAAGCTGTGGCTAAGAATCATAGC 2550
Query 2556 ACAACTAAAGAAGCAATCAAAGTTGGATCTTCAGCAGGTGTATACCGAACCGTACTGACA 2615
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2551 ACAACTAAAGAAGCAATCAACGTTGGATCTTCAGCAGGTGTATACCGAACAGTACTGACA 2610
Query 2616 CATTTTAGCCAGAGATACCCAAAGATCCCGGTGATTGACGAATCACATATGCACAATACA 2675
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2611 CATTTTAGCCAGAGATACCCAAAGATCCCGGTGATTGACGAGTCGCATATGCACAATACA 2670
Query 2676 TGCATTGCCTTTGATATGATGAGTATAAACATGGCGGATTTACATGTGCTTCCAAAGATT 2735
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2671 TGCATTGCCTTTGATATGATGAGTATAAACATGGCGGATCTACATGTCCTTCCAAAGATT 2730
Query 2736 TTACCTTACTTCAAAACTCTATTCAGAAACCAAGTGGTTgaagaagaagaagaagaagaa 2795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2731 TTACCTTACTTCAAAACTCTATTCAGAAACCAAGTGGTTGAAGAAGAAGAAGAAGA-GA- 2788
Query 2796 gagaCTGATGATGATAGCTTAAT-ACGTGACAAAGTCCCAAGCTTTTTCATCAATTAG 2852
||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2789 ----CTGATGATGATAGCTTAATGA-GTGACAAAGTCCCAAGCTTTTTCATCAATTAG 2841
> Ahg474332 jgi|Araly1|474332|fgenesh2_kg.1__4286__AT1G52160.1
Length=2722
Score = 1391 bits (753), Expect = 0.0
Identities = 1619/2024 (80%), Gaps = 112/2024 (6%)
Strand=Plus/Plus
Query 806 TGATGCCTA-TGTTCTTGTGGATGACGAAGTTGTGAAAATATCCGCCATTCTCCTAG-AA 863
|||| |||| |||||||||| | || ||| |||||||||||||||| ||| | || | ||
Sbjct 664 TGAT-CCTATTGTTCTTGTGAACGATGAAATTGTGAAAATATCCGCGATTAT-CTTGAAA 721
Query 864 CCAAGTCGCT-TAGAGG-A-A-TCTGGCAGCAAACCTGGTGAAAC-AGCAGTTATATATG 918
|| ||| || | |||| | | ||||||| |||| |||| | | | ||||| ||||||
Sbjct 722 CCGTGTCACTCT-GAGGAAGACTCTGGCAACAAATCTGGCG-AGCTCTCAGTTGTATATG 779
Query 919 TATGTGAATTACCTGAAATCAAAGGAAAGTTTGATC-CAAAGAAGGCCATG--G-CTCTT 974
||||||||||||||||||| ||||| ||||| | | ||||||| | | | | ||
Sbjct 780 TATGTGAATTACCTGAAATTTTGGGAAAATTTGA-CTTAGAGAAGGCAAAGAAGATTTTT 838
Query 975 GGAT-TGAGAG-CTGGTCCAAAGTACAGTTATCTTCAGTCTGGAC-AGTCAGTCAAGTCA 1031
|| | | | || |||||||||| || ||| | |||||||| || | | ||||| |||||
Sbjct 839 GG-TGTTA-AGCCTGGTCCAAAATATAGTAAACTTCAGTCCGG-CGAATCAGTGAAGTCG 895
Query 1032 GATTTTAA-AGATATTACGGTTCATCCGAGTGATGTGATGGGACCTTCAGTTCCTGGTCC 1090
|| | || ||||||||||||| |||| |||||||| |||||||||||| ||||||||||
Sbjct 896 GA-TGAAAGAGATATTACGGTTTATCCAAGTGATGTTATGGGACCTTCACTTCCTGGTCC 954
Query 1091 TGTTGTTTTGCTTGTGGATTGTCCAACAGAGTCACATGCCG-AGGAACTGCTATCT-A-T 1147
||||| | |||||||| |||||||| ||||| || || | | |||||| | ||| | |
Sbjct 955 CATTGTTCTCCTTGTGGACTGTCCAACTGAGTCGCACGCTGCA-GAACTG-T-TCTCAGT 1011
Query 1148 CCCGTCTATGAAGACTTATTATTCATGT-CTTGACAATTC-AACAGATGGAGCTAAGCTT 1205
|||| || | | ||||||||||||| | ||| | || ||| |||||| | ||| ||
Sbjct 1012 TAAGTCTTTGGATAGTTATTATTCATGTAC-TGATGA-TCAAACCGATGGACCGAAGTTT 1069
Query 1206 GTTAATTGTATTATTCATCTAAGTCCAGCTTCTGTAACAAATAGTTCTACATACCGAAGC 1265
|| ||||||||||| ||| | |||||| |||||| |||| |||| |||| |||| ||||
Sbjct 1070 GTAAATTGTATTATACATTTGAGTCCATTTTCTGTGACAAGTAGTCCTACTTACCAAAGC 1129
Query 1266 TGGATGAAGAGATTCCATTCT-GCCCAGCACATTCTCGCTGGACAT-GAAGCGAAGAATA 1323
|||||||| | ||| |||||| | || || ||||| ||||||||| ||| ||||||||
Sbjct 1130 TGGATGAATAAATTTCATTCTAG-TCAACATATTCTTGCTGGACATCAAAG-GAAGAATA 1187
Query 1324 TGGAGTTT-CCAATCCTGAGAGCCAGTTCTAGAATCACAGCCAGACTTAACTATTTATGT 1382
||| ||| ||||| |||| ||| ||||| |||||| | ||||||||||||||||| ||
Sbjct 1188 TGG-CTTTCCCAATTCTGAAAGCAAGTTCAAGAATCGCTGCCAGACTTAACTATTTGTGC 1246
Query 1383 CCACAGTTCTTCCCAGCTCCTGGATTTTGGTCTCATCAACATGATAATAACTCGAT-A-A 1440
|| |||||||| || ||||||||||||||| | | ||||| || | ||| ||||| | |
Sbjct 1247 CCGCAGTTCTTTCCTGCTCCTGGATTTTGG-C-C-TCAACTTGCTGATATGTCGATGATA 1303
Query 1441 -ACCCCACTTCTTTGAGCAAGTGCTTCGA-TTCGAATCTTGGTGAAAGCATTTCTGCTGA 1498
| ||||| ||| || ||||||| || | ||| || |||| ||||||||||||||||||
Sbjct 1304 GATTCCACTCCTTGGAACAAGTGC-TCAAGTTCAAACCTTGCTGAAAGCATTTCTGCTGA 1362
Query 1499 AAATCTCCTCAAGTTCACTTTGCGTCCACATGG-TAATCTTGGGGTAGACAGATCTAGTA 1557
||||||||||||||||| ||||||||| | ||| || || |||| |||| |||||| |||
Sbjct 1363 AAATCTCCTCAAGTTCAATTTGCGTCC-CGTGGCTATTCGTGGGATAGAAAGATCTTGTA 1421
Query 1558 TCCCTAG-TCGATTAACAGCTTTACG-AGTGA-TGGATGAGCTTCTTTCA-GAAATTCCT 1613
||||| | || ||| ||| | | | | ||| | ||||||||| | ||| | ||||||||
Sbjct 1422 TCCCT-GCTCAATTGACATCCTCA-GAAGT-ATTGGATGAGC-TATTTGATGAAATTCCG 1477
Query 1614 GAAATCAGCAG-TAAGACCGAAGAAATCAAGCAGTTATGGAATGGACAACACAACAAGAT 1672
|| || | || ||| | |||||||||||||||||| |||||| ||||||||||||||
Sbjct 1478 GAGATTA-AAGATAAAAGCGAAGAAATCAAGCAGTTCTGGAATAAACAACACAACAAGAC 1536
Query 1673 GATGATCGAAGAGCCATGGCTGGGTGAAAGC---ACTG---TTCCAAGCTGTCTTGAAAA 1726
||| |||||| ||| ||||||| ||| ||| |||| |||| ||||||||||||||
Sbjct 1537 GATCATCGAAAAGCTATGGCTGACTGAGAGCAATACTGTTCTTCCTAGCTGTCTTGAAAA 1596
Query 1727 CATTAGAAGAGACGACATGGAGATAGTTCTTTTGGGCACTGGTTCCTCCCAACCCTCAAA 1786
||||||| |||| ||||||||||| ||| |||| ||||||||||| || || || |||||
Sbjct 1597 CATTAGACGAGATGACATGGAGATTGTTATTTTAGGCACTGGTTCGTCTCAGCCTTCAAA 1656
Query 1787 ATACCGAAATGTCACG-GCAATTTACATCGACCTATTCTCTAGAGGCAGTATTCTCTTGG 1845
|||||||||||||| | |||||||| || ||||||||||||||||| ||| ||||| | |
Sbjct 1657 ATACCGAAATGTCA-GTGCAATTTATATTGACCTATTCTCTAGAGGTAGTCTTCTCCTAG 1715
Query 1846 ATTGTGGGGAAGGTACCTTAGGCCAGCTTAAACGAAGATATGGTTTAGAAGGAGCTGATG 1905
||||||| ||||| ||||| |||||||||||| |||||||||||||||| || || ||||
Sbjct 1716 ATTGTGGTGAAGGAACCTTGGGCCAGCTTAAAAGAAGATATGGTTTAGACGGTGCAGATG 1775
Query 1906 AAGCAGTCAGAAACTTGAGATGTATATGGATCTCTCACATCCATGCTGATCACCATACGG 1965
| || || ||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1776 AGGCGGTTAGAAAGTTGAGATGTATATGGATCTCTCACATCCACGCCGATCACCATACAG 1835
Query 1966 GTCTTGCAAGAATCCTTGCTCGCAGACGTGAGCTTTTGAAAGGATTGGCTCATGAGCCAG 2025
||||||| || || || |||| ||| | |||||||||||||| || |||| |||||||
Sbjct 1836 GTCTTGCGAGGATTCTAGCTCTTAGAGGCAAGCTTTTGAAAGGAGTGACTCACGAGCCAG 1895
Query 2026 CAATTGTGGTTGGACCGAGATCGCTTAAGA-ACTTTCTCGATGCATATCAAAGACTTGAG 2084
|||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 1896 TGATTGTGGTGGGACCGAGGCCGCTTAA-ACGCTTTCTCGATGCATATCAAAGACTTGAG 1954
Query 2085 GATTTAGATATGGAGTTTCTCGACTGCAGGAA-CACCACAACAACATCTTGGGCTTCTGT 2143
|||||||||||||| ||||| || || || || |||||||||||| |||||||||||| |
Sbjct 1955 GATTTAGATATGGAATTTCTAGATTGTAG-AAGCACCACAACAACTTCTTGGGCTTCTTT 2013
Query 2144 AGAAACCAGCCGCCCTGAGAAAAATACCAGTAGCGGCAATGCAGAGGGTTCTTTGTTCAG 2203
||||| | | || | | | | ||| | ||||||||| |||||||| ||
Sbjct 2014 AGAAAGC-G--GC---G-G-------C--G--GCG--A-TGCAGAGGGATCTTTGTTTAG 2052
Query 2204 TAAAGGAAGTC-TAATGCAGAGTATATATAAAAGACC-GAGCAGCCCACTGACAGACAAT 2261
| ||||||||| || |||||||| | | ||||||| | || | ||| | | || |||
Sbjct 2053 TGAAGGAAGTCCTA-TGCAGAGTGTCTTTAAAAGATCTGAT-ATCCCG--G-CGGATAAT 2107
Query 2262 TCTTCAGCTTTACCAT-TCTTGAAGAAACTGAAAAAAGTCCTCGGCGAAATGGGGTTGGA 2320
||||| | ||| | | | || ||||| ||||| || || || ||||||| || |||||
Sbjct 2108 TCTTCGGTTTTGCTGTGT-TTAAAGAATCTGAAGAAGGTTCTTAGCGAAATCGGATTGGA 2166
Query 2321 -GCATTTGATTAGCTTTCCTGTTGTGCATTGCCCTCAAGCCTTTGGGGTTTCGTTA-AAA 2378
| |||||||||| ||||||||||| ||||| |||||||||| ||| || ||||| |||
Sbjct 2167 TG-ATTTGATTAGTTTTCCTGTTGTACATTGTCCTCAAGCCTATGGTGT--CGTTATAAA 2223
Query 2379 -GCAGCAGAAAGAAAAAACATTGCCGGAGATGAGATTCCGGGGTGGAAAATGGTTTACTC 2437
||||| |||||| ||| | || ||||| | || ||||| |||||||||||||| ||
Sbjct 2224 AGCAGCTGAAAGAGTAAATAGTGTTGGAGAACAAATCCCGGGATGGAAAATGGTTTATTC 2283
Query 2438 GGGAGACACAAGGCCTTGTCCTGAGATGGTTGAAGCTTCAAAAGGA-GCAACAGTTCTTA 2496
|| |||||||| |||||||| ||||| |||||||| ||| || | |||||||||||||
Sbjct 2284 AGGCGACACAAGACCTTGTCCCGAGATCGTTGAAGCATCACGAG-ATGCAACAGTTCTTA 2342
Query 2497 TACATGAGGCGACGTTTGAGGATGCGTTGGTAGAAGAAGCTGTGGCTAAAAACCATAGCA 2556
|||||||||| |||||||| ||||| ||| ||||||||||| |||| || || || ||||
Sbjct 2343 TACATGAGGCTACGTTTGAAGATGCATTGATAGAAGAAGCTTTGGCGAAGAATCACAGCA 2402
Query 2557 CAACTAAAGAAGCAATCAAAGTTGGATCTTCAGCAGGTGTATACCGAACCGTACTGACAC 2616
| ||||||||||||||| | || |||||||| ||| || || || | || || || |
Sbjct 2403 CGACTAAAGAAGCAATCGATGTGGGATCTTCTGCAAATGCGTATCGGATTGTTCTCACGC 2462
Query 2617 ATTTTAGCCAGAGATACCCAAAGATCCCGGTGATTGACGAATCACATATGCACAATACAT 2676
||||||||||| |||| || ||||| ||||||||||| || || |||||||| ||||| |
Sbjct 2463 ATTTTAGCCAGCGATATCCGAAGATTCCGGTGATTGATGAGTCGCATATGCATAATACCT 2522
Query 2677 GCATTGCCTTTGATATGATGAGTATAAACATGGCGGATTTACATGTGCTTCCAAAGATTT 2736
|||||||||||||| ||||||||||||||||||||||||| || |||||||| ||| | |
Sbjct 2523 GCATTGCCTTTGATCTGATGAGTATAAACATGGCGGATTTGCAAGTGCTTCCTAAGGTCT 2582
Query 2737 TACCTTACTTCAAAACTCTATTCAGAAACCA-AGTGGTTgaaga 2779
|||| || ||||||||||| |||||| | | | ||||||||||
Sbjct 2583 TACCGTATTTCAAAACTCTCTTCAGAGATGAGA-TGGTTGAAGA 2625
Score = 388 bits (210), Expect = 9e-107
Identities = 374/454 (82%), Gaps = 8/454 (2%)
Strand=Plus/Plus
Query 302 TTCTTTCGAGTTTAATAAGAGAAGAGCTG-AGGGATTGGATAAGGTCGATAAGCCTAAGA 360
|||||||| ||||||||| ||||||||| ||| ||| ||||| ||||||| || |
Sbjct 202 TTCTTTCGTCTTTAATAAGCGAAGAGCTGAAGGAATT-GATAAAACCGATAAG-AAAAAA 259
Query 361 AG-AATC-TCAAGAGGAATACTCGCACCCTTAA-CCCTACCAATACCATCGCCTATGTTC 417
|| |||| | || | || || | | ||||| |||| | || || || || || | |
Sbjct 260 AGAAATCTTGAA-CGCAAAACCCAAAAGCTTAATCCCT-CTAACACTATTGCTTACGCAC 317
Query 418 AGATCCTTGGGACTGGAATGGATACACAGGATACGTCACCTTCTGTATTACTCTTCTTTG 477
|||| ||||| || ||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 318 AGATTCTTGGAACGGGAATGGATACTCAGGATACATCATCTTCTGTATTACTCTTCTTTG 377
Query 478 ACAAACAAAGATTCATCTTTAATGCTGGAGAGGGGTTGCAACGTTTTTGTACTGAACATA 537
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 378 ACAAACAAAGATTCATTTTTAATGCTGGAGAGGGCTTGCAACGTTTTTGTACAGAGCATA 437
Query 538 AAATTAAGTTATCAAAGGTAGATCATATATTTTTGTCTCGTGTGTGCTCAGAGACAGCAG 597
| ||||| |||||||| |||||||| | |||||||||||||| ||||||||||||||||
Sbjct 438 AGATTAAACTATCAAAGATAGATCATGTGTTTTTGTCTCGTGTCTGCTCAGAGACAGCAG 497
Query 598 GCGGGCTTCCAGGTCTTCTACTGACCCTAGCTGGTATCGGGGAACAAGGACTATCCGTCA 657
| || |||||||||||| |||| || || |||||||| || ||| |||| || || || |
Sbjct 498 GAGGACTTCCAGGTCTTTTACTAACTCTTGCTGGTATTGGTGAAGAAGGGCTTTCGGTGA 557
Query 658 ACGTATGGGGTCCTTCAGATCTTAAGTATTTGGTTGATGCTATGAGGTCATTTATCCCTC 717
| |||||||||||||| |||||||| ||||| |||||||| |||| ||| ||||| || |
Sbjct 558 ATGTATGGGGTCCTTCGGATCTTAACTATTTAGTTGATGCAATGAAGTCGTTTATTCCAC 617
Query 718 GTGCTGCCATGGTTCATACAAGAAGTTTTGGTCC 751
| || || ||||||||||| | |||||||||||
Sbjct 618 GGGCGGCTATGGTTCATACTCGGAGTTTTGGTCC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110918793440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5