BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16270.1
Length=2764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929447 jgi|Araly1|929447|scaffold_301904.1 3474 0.0
> Ahg929447 jgi|Araly1|929447|scaffold_301904.1
Length=2126
Score = 3474 bits (1881), Expect = 0.0
Identities = 2045/2124 (96%), Gaps = 12/2124 (1%)
Strand=Plus/Plus
Query 282 TTTTGTTTCGAATTCGCCATGGATACGAGCAGGAGAGCTGTGGAATCGTATTGGAGGTCG 341
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 TTTTATTTCGAATTCGACATGGATACGAGCAGGAGAGCTGTAGAATCGTATTGGAGGTCG 62
Query 342 CGGATGATAGATGCGGTTACGTCTGATGAGGACAAAGTTGCGCCTGTGTACAAATTGGAA 401
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 63 CGGATGATAGATGGGGTTACGTCTGATGAGGACAAAGTAGCGCCTGTGTACAAATTGGAA 122
Query 402 GAGATCTGTGACCTCCTTCGTTCTTCTCATGTCAGCATCGTCAAGGAGTTTTCTGAATTC 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAGATCTGTGACCTCCTTCGTTCTTCTCATGTCAGCATCGTCAAGGAGTTTTCTGAATTC 182
Query 462 ATTTTGAAACGTCTTGATAACAAAAGCCCCATTGTTAAGCAGAAGGCTCTTAGGTTGATA 521
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 ATTTTGAAACGTCTTGATAACAAAAGCCCTATTGTTAAGCAGAAGGCTCTTAGGTTGATA 242
Query 522 AAGTATGCTGTGGGAAAGTCTGGCTCAGAGTTTAGACGAGAAATGCAAAGGAATTCGGTT 581
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 243 AAGTATGCTGTGGGAAAGTCTGGATCAGAGTTTAGACGAGAAATGCAAAGGAACTCGGTT 302
Query 582 GCAGTGCGCAATCTATTCCATTACAAGGGGCATCCAGATCCTTTAAAAGGAGATGCACTT 641
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 303 GCAGTGCGCAATCTATTCCATTACAAGGGGCATCCAGATCCTTTAAAAGGGGATGCACTT 362
Query 642 AATAAGGCTGTACGGGAAACTGCTCATGAAACAATTTCTGCTATATTCTCAGAAGAGAAT 701
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 363 AATAAGGCTGTACGGGAAACTGCTCATGAAACAATATCTGCTATATTCTCGGAAGAGAAC 422
Query 702 GGTACTAAACCAGCTGCTCCTGAAAGCATCAACAGACGCATTGAAGGATTCGGGAATACT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGTACTAAACCAGCTGCTCCTGAAAGCATCAACAGACGCATTGAAGGATTCGGGAATACT 482
Query 762 AACTTTCAGGTGCCCTCTAATGATAATAAATCGTTCCTTAGTGAGGTGGTGGGTATTGGA 821
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 483 AACTTTCAGGTGCCCTCAAATGATAATAAATCGTTCCTGAGTGAGGTGGTGGGTATTGGA 542
Query 822 AGTGCATCTATAAAGCAAGGAATCAGTAATTTTGCTCAAGGCCATTTGCCAAAGAAGAAT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGTGCATCTATAAAGCAAGGAATCAGTAATTTTGCTCAAGGCCATTTGCCAAAGAAGAAT 602
Query 882 GAGAATGGCAGCAGCAGCTACAGAGGTCCAAATCTCCACAGATCATTAACTATGGAAAAT 941
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GAGAATGGAAGCAGCAGCTACAGAGGTCCAAATCTCCACAGATCATTAACTATGGAAAAT 662
Query 942 GAGAACTTCAGTAGATATGATCCAGTTAAGCTGGGGAAGGATGGTAACTACGGAACGTCT 1001
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 663 GAGAACTTCAGTAGATACGATCCAGTTAAGCTGGGGAAGGATGGTAACTACGGAATGTCT 722
Query 1002 AAGAACACGACTGGTGGATCTTGGGGCCACGCTTCCGGAGAAGCAAGTGAAAGTTCTGCT 1061
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 723 AAGAACACTACTGGTGGATCTTGGGGCCATGCTTCCGGAGAAGCAAGTGAAAGTTCTGCT 782
Query 1062 TCAGTTCGTGTTGAGAGCAAAACTCGTGAGGAAAAGCTGCTGGAAACCATTGTTACATCT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCAGTTCGTGTTGAGAGCAAAACTCGTGAGGAAAAGCTGCTGGAAACCATTGTTACATCT 842
Query 1122 GGTGGTGTACGCCTGCAGCCAACTCGTGATGCTCTTCATGTTTTCATTTTAGAGGCTGCA 1181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGCGGTGTACGCCTGCAGCCAACTCGTGATGCTCTTCATGTTTTCATTTTAGAGGCTGCA 902
Query 1182 AAAATGGACGCTGTTGCTTTAAGCATTGCTCTTGACGGGAAGCTCCATTCTCCAATGTGG 1241
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 903 AAAATGGACGCTGTTGCTTTAAGCATTGCTCTTGACGGGAAGCTCCAGTCCCCAATGTGG 962
Query 1242 CAGGTTCGGATGAAAGCTTTATGTGTCCTTGAGGCCATTTTGAGGAAGAAGGAAGATGAG 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGGTTCGGATGAAAGCTTTATGTGTCCTTGAGGCCATTTTGAGGAAGAAGGAAGATGAT 1022
Query 1302 AATTTTTCAATTGTACATACCTATTTTAGTGAAAACTTGGATGCCATACAGCGGTGCGCA 1361
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 1023 AATTTTTCAATTGTACATACCTATTTTAGTGAAAACATGGATGCCATACAGCGATGCTCA 1082
Query 1362 GAGTCTCCACAATCTTCCCTTCGAGAAAAGGCGAACAAGGTTCTGAGCCTTCTAAATGGT 1421
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1083 GAGTCTCCGCAATCTTCCCTTCGAGAAAAGGCTAACAAGGTTCTGAGCCTTCTAAATGGT 1142
Query 1422 GGACAGTCAAGTGGGTTGATGAGCAGCTCTGATAATACTGTGAAGCGAGAGGCTGCTGTT 1481
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1143 GGACAGTCAAGTGGGTTGATGAGCAGCTCAGATAATACGGTGAAGCGAGAGGCTGCTGTA 1202
Query 1482 GATTTACCTGACTTGATTGACACCGGTGATTCAGAC---------GA---TACTTTGAAC 1529
||||||||||||||||| ||||| |||||||||||| || ||||||||||
Sbjct 1203 GATTTACCTGACTTGATCGACACTGGTGATTCAGACTATATAACAGAAGATACTTTGAAC 1262
Query 1530 AATCTGAATGCTATAGATACTGGCAGTACAGTGGCGACAGCAGGTCCATTGATGGATGAT 1589
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1263 AATCTGAATGCTATAGATACTGGCAGTACTGTGGCGAAAGCAGCTCCATTGATGGATGAT 1322
Query 1590 GATTGGTTTGGGGATAGCTCTGACATTGGACTGAGTAGCAGCGAGAAGAAAACTGATGAC 1649
||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct 1323 GATTGGTTTGGGGATAGCTCTGACACTGTACTGAGTAGCAGCGAGATGAAAAATGATGAC 1382
Query 1650 GACCCCTTTGCAGATGTCTCATTTCATCCGAATGAAGAAAAAGAAAGTGCAGATGACCTC 1709
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1383 GACCCCTTTGCAGATGTATCATTTCATCCGAATGAAGCAAAAGAAAGTGCAGATGACCTG 1442
Query 1710 TTCTCTGGAATGACTGTCGGGGAAAAGTCCGCTGCTGTTGGTGGTAATCATGTGCCTGAT 1769
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1443 TTCTCTGGAATGACTGTCGGGGAAAAGTCCGCTGCTGCTGGTGGTAATCATGTGCCTGAG 1502
Query 1770 CTATTTGATATGTTTGGGTCAACTGCAAAACTTGAAGCAGAGCCAAAAGATGCAAAAAAC 1829
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1503 CTATTTGATATGTTTGGGTCAACTGCAAAACTTGAAGCAGAGCCAAAAGATTCAAAAAAC 1562
Query 1830 ATTAATGATTTGATGGGAAGTTTCTCCATTGACGAAAACAATTCAAATCAGAAAGGCTCG 1889
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1563 ATAAATGATTTGATGGCAAGTTTCTCCATTGACGAAAACATTTCAAATCAGAAAGGCTCG 1622
Query 1890 TCTTCAAGCACTCTTCCACAGGATTTATTTGCAATGCCGAGCACCACCAGCCACCAAGCA 1949
||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 1623 TCTTCAAGCACCCTTCCAAAAGATTTATTTGCAATGCCGAGTACCACCAGCCACCAAGCA 1682
Query 1950 CCGGAAAATCCTGTTGGAGGCATTCTTGGCTCACAAAATCCTGGGTTTATTCAAAACACA 2009
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1683 CCGGAAAATCCTGTTGGAGGGATTCTTGGCTCACAAAATCCTGGGTTTATTCAAAACACA 1742
Query 2010 ATGCTTCCTGGAGGTGTTATGCCATTCAATTTTCCTCAAGGGATGATGATGAATCCAGCT 2069
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1743 ATGCTTCCTGGGGGTGTTATGCCCTTCAATTTTCCTCCAGGGATGATGATGAATCCAGCT 1802
Query 2070 TTTGCATCCCAACCTTTGAATTACGCTGCCATGGCAAGCTTGTTAGCTCAGCAGCAGCAG 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 TTTGCATCCCAACCTTTGAATTACGCTGCCATGGCAAGCTTGTTAGCTCAGCAGCAGCAG 1862
Query 2130 TACCTTGGTAATATGTCCAACTTCCAGCAGTTCGGCAATCTGAACGCTCAGGGTAGCGGA 2189
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1863 TACCTTGGTAATATATCCAACTTCCAGCAGTTTGGCAACCTGAACGCTCAGGGGAGCGGA 1922
Query 2190 AATGTTCTTTCTATGGGTACAAGTGGAGGGAATCAGTCCGCACTCCCTGATATATTCCAG 2249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AATGTTCTTTCTATGGGTACTAGTGGAGGGAATCAGTCCGCACTCCCTGATATATTCCAG 1982
Query 2250 CCAAATTTTGGTAATCAGGCTCCAACCTCAACAATGAATGGTTCGAAAAAAGAAGATACC 2309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 CCAAATTTTGGTAATCAGGCTCCAACCTCAACAATGAATGGTTCGAAAAAAGAAGATACC 2042
Query 2310 AGAGCCTTCGATTTCATTTCTGATCATCTTACATCAGCCCGCGACACAAAGAGAGTATCT 2369
||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||
Sbjct 2043 AGAGCCTTCGATTTCATCTCCGATCATCTTGCATCAACCCGCGACACAAAGAGAGTATCT 2102
Query 2370 TGATGGTTGCTTACAAAATTCCGC 2393
||||| ||||||||||||||||||
Sbjct 2103 TGATGCTTGCTTACAAAATTCCGC 2126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104291090810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5