BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16280.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929448 jgi|Araly1|929448|scaffold_301905.1 1051 0.0
> Ahg929448 jgi|Araly1|929448|scaffold_301905.1
Length=754
Score = 1051 bits (569), Expect = 0.0
Identities = 689/746 (92%), Gaps = 11/746 (1%)
Strand=Plus/Plus
Query 3 GTATCAAACGAGAGTACAAAAGATGACGTCACTCAACAGCTCTGCATCACCAACATCATC 62
||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| | ||
Sbjct 1 GTATCAAAC--GAGTACAAAAAATGACGTCACTCAACAGCTCTTCATCACCAACACCGTC 58
Query 63 GTCATCAGACCAATCTGATGCAACTACTACAACAAGCACCCACTTGTCTGAAGAAGAAGC 122
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 ATCATCTGACCAATCTGATGCAACTACTACAACAAGCACCGGCTTGTCTGAAGAAGAAGC 118
Query 123 TCCACCCAGAAACAACAACACAAGAAAGAGAAGGAGAGAttcttcttctgc-t--tcttc 179
|||||| |||||||||| ||||||||||||||| ||||||||||||||||| | |||||
Sbjct 119 TCCACCGAGAAACAACAGCACAAGAAAGAGAAGAAGAGATTCTTCTTCTGCTTCATCTTC 178
Query 180 atcttcttcAATGCAACATCCTGTTTACAGAGGTGTGCGGATGAGAAGTTGGGGCAAATG 239
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 TTCTTCTTCAAAGCAACATCCTGTTTACAGAGGTGTACGGATGAGAAGTTGGGGCAAATG 238
Query 240 GGTCTCCGAGATCCGACAACCTCGTAAGAAAACTCGTATTTGGCTCGGCACTTTTGTCAC 299
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 239 GGTCTCCGAGATTCGACAGCCTCGTAAGAAAACTCGTATTTGGCTCGGCACTTTCGCCAC 298
Query 300 CGCTGATATGGCTGCTCGTGCTCACGACGTCGCTGCTCTCACCATCAAAGGCTCCTCCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CGCTGATATGGCTGCTCGTGCTCACGACGTCGCTGCTCTCACCATCAAAGGATCCTCCGC 358
Query 360 CGTC-TTAAATTTCCCTGAGCTTGCTTCTCTCTTCCCTCGTCCGGCGTCATCATCGCCGC 418
|||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 359 CGTCATTAA-TTTCCCTGAGCTTGCTTCTCTCTTCCCTCGTCCGGCGTCGTCTTCGCCGC 417
Query 419 ATGATATCCA-GACAGCCGCCGCAGAAGCCGCCGCCATGGTGGTCGAAGAAAAACTGTTA 477
|||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 418 ATGATATCCAAG-CAGCGGCCGCAGAAGCCGCCGCCATGGTGGTCGAAGAAAAAATGTCG 476
Query 478 GAGA-AGGATGAGGCTCCGGAGGCCCCACCTTCGTCGGAATCTTCTTACGTGGCGGCGGA 536
|| | || | | | | ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 477 GATACAG-AGGCGACGCCGGAGGAACCACCGTCGTCGGAATCTTCTTACGTGGCGGCGGA 535
Query 537 GTCAGAGGATGAGGAGAGGTTGGAGAAAATTGTGGAGCTGCCTAACATTGAAGAAGGAAG 596
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 536 GTCAGAGGAGGAGGAGAGGTTGGAGGAGATTGTGGAGCTGCCTAACATTGAAGAAGGGAG 595
Query 597 TTATGACGAGAGTGTGACATCACGTGCTGATCTGGCTTATTCTGAGCCGTTCGATTGTTG 656
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 596 CTATGACGAGAGCGTGACGTCACGCGCTGATCTGGCTTATTCTGAGCCGTTCGATTGTTG 655
Query 657 GGTGTATCCTCCGGTTATGGATTTTTATGAAGAAATATCGGAGTTTAATTTCGTGGAATT 716
|||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 656 GGTGTATCCTCCAGCTATGGATTTTTATGAAGAAATATCGGAATTTAATTTCGTGGAATT 715
Query 717 GTGGAGCTTTAATCACTAATTAAGTT 742
|||||||||||||| ||||||||||
Sbjct 716 ATGGAGCTTTAATCATTAATTAAGTT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5