BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16300.1 Length=639 Score E Sequences producing significant alignments: (Bits) Value Ahg904577 jgi|Araly1|904577|Al_scaffold_0003_1705 915 0.0 > Ahg904577 jgi|Araly1|904577|Al_scaffold_0003_1705 Length=639 Score = 915 bits (495), Expect = 0.0 Identities = 595/643 (93%), Gaps = 8/643 (1%) Strand=Plus/Plus Query 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACCCGACCGTTGCGAGTGCAGAAGCGAAGCTT 60 |||||||||||||||||||||||||||||| ||||||||| || || |||| |||||||| Sbjct 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACTCGACCGTTGTGATTGAAGAAACGAAGCTT 60 Query 61 GATATCCGCGACGTGGTCAACACAGCCATCACTTACGGCGAAGATAACCGTCACGGCGGC 120 |||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||| ||| Sbjct 61 GATATCCGCGACGTGGTCAACACAACCACCACTTACGGCGAGGATAACGGTCACGGAGGC 120 Query 121 GGGAAACGCAATGACGTGGCCATGTTTGTGCTAAGAGCCATGTGCATGGCCGTATCAACG 180 |||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| | Sbjct 121 GGGAGACGTAATGACGTGGCAATGGTTGTGCTAAGAGCCATGTGCATGGCCGTATCCGCT 180 Query 181 GTGGCTGT-TACGTTAATGGTAACAGCACGCGAGACTAGCATGACCACTCTCTATGGCTT 239 |||||||| | |||| ||||| ||||| || ||||||||||||||||||||||| || || Sbjct 181 GTGGCTGTCT-CGTTGATGGTGACAGCCCGTGAGACTAGCATGACCACTCTCTACGGTTT 239 Query 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTTGTGGT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTGGTGGT 299 Query 300 TTCATCGGCAACGGTTCTTTACTCGTTGATTCAACTGATTATAAGTGGAACAAGACTAAT 359 ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 300 TTCATCGGCGACGGTTCTTTACTCGTTGATCCAACTAATTATAAGTGGAACAAGACTAAT 359 Query 360 GAGAAAA-TCTCCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GAGAAAATTC-CCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418 Query 419 AGATAATAGGATACGCAATGGTGAGTGGAGGATCTGCAGCTTTAGGAGTGACGAATATGA 478 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 419 AGATAATAGGATACGCAATGGTGAGTGGTGGATCAGCGGCTTTAGGAGTGACGAATATGA 478 Query 479 ACAGAACAGGAATCAGACACATGCCTCTTCCTAATTTCTGCAAATCTCTTGGTTTCTTCT 538 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 ACAGAACAGGAATCAGACACATGCCTCTTCCAAATTTCTGCAAATCTCTTGGTTTCTTCT 538 Query 539 GTGACCATCTCGCTGGCTCCATCGTCTTCGCCTT-ATTCGCGTTTCTCCTCCTCGCCGCT 597 ||||||||||||||| |||| |||| || || || || |||||||||||| ||||||||| Sbjct 539 GTGACCATCTCGCTGTCTCCGTCGTTTTTGCTTTGAT-CGCGTTTCTCCTTCTCGCCGCT 597 Query 598 TCTTCACTTCTCGACGTTCTCCA-TCTCTCACGCCACCGCTAA 639 ||||| |||||||||||||| | |||||||||| |||||||| Sbjct 598 TCTTCTTTTCTCGACGTTCTC-AGTCTCTCACGCGACCGCTAA 639 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23407471038 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5