BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16300.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904577 jgi|Araly1|904577|Al_scaffold_0003_1705 915 0.0
> Ahg904577 jgi|Araly1|904577|Al_scaffold_0003_1705
Length=639
Score = 915 bits (495), Expect = 0.0
Identities = 595/643 (93%), Gaps = 8/643 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACCCGACCGTTGCGAGTGCAGAAGCGAAGCTT 60
|||||||||||||||||||||||||||||| ||||||||| || || |||| ||||||||
Sbjct 1 ATGGCGAAAGCAGCAGAGCAGAAACAAAACTCGACCGTTGTGATTGAAGAAACGAAGCTT 60
Query 61 GATATCCGCGACGTGGTCAACACAGCCATCACTTACGGCGAAGATAACCGTCACGGCGGC 120
|||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||| |||
Sbjct 61 GATATCCGCGACGTGGTCAACACAACCACCACTTACGGCGAGGATAACGGTCACGGAGGC 120
Query 121 GGGAAACGCAATGACGTGGCCATGTTTGTGCTAAGAGCCATGTGCATGGCCGTATCAACG 180
|||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 121 GGGAGACGTAATGACGTGGCAATGGTTGTGCTAAGAGCCATGTGCATGGCCGTATCCGCT 180
Query 181 GTGGCTGT-TACGTTAATGGTAACAGCACGCGAGACTAGCATGACCACTCTCTATGGCTT 239
|||||||| | |||| ||||| ||||| || ||||||||||||||||||||||| || ||
Sbjct 181 GTGGCTGTCT-CGTTGATGGTGACAGCCCGTGAGACTAGCATGACCACTCTCTACGGTTT 239
Query 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTTGTGGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CGAGTTTCAGCTCCACGCCGTTTGGTCTCTCTCAGATTCTCTTATATATCTAGTGGTGGT 299
Query 300 TTCATCGGCAACGGTTCTTTACTCGTTGATTCAACTGATTATAAGTGGAACAAGACTAAT 359
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 TTCATCGGCGACGGTTCTTTACTCGTTGATCCAACTAATTATAAGTGGAACAAGACTAAT 359
Query 360 GAGAAAA-TCTCCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAAATTC-CCGGTGATTCCGACAAGAACACAAGCATGGTTTTGCTTCGTTGCAGATC 418
Query 419 AGATAATAGGATACGCAATGGTGAGTGGAGGATCTGCAGCTTTAGGAGTGACGAATATGA 478
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 419 AGATAATAGGATACGCAATGGTGAGTGGTGGATCAGCGGCTTTAGGAGTGACGAATATGA 478
Query 479 ACAGAACAGGAATCAGACACATGCCTCTTCCTAATTTCTGCAAATCTCTTGGTTTCTTCT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 ACAGAACAGGAATCAGACACATGCCTCTTCCAAATTTCTGCAAATCTCTTGGTTTCTTCT 538
Query 539 GTGACCATCTCGCTGGCTCCATCGTCTTCGCCTT-ATTCGCGTTTCTCCTCCTCGCCGCT 597
||||||||||||||| |||| |||| || || || || |||||||||||| |||||||||
Sbjct 539 GTGACCATCTCGCTGTCTCCGTCGTTTTTGCTTTGAT-CGCGTTTCTCCTTCTCGCCGCT 597
Query 598 TCTTCACTTCTCGACGTTCTCCA-TCTCTCACGCCACCGCTAA 639
||||| |||||||||||||| | |||||||||| ||||||||
Sbjct 598 TCTTCTTTTCTCGACGTTCTC-AGTCTCTCACGCGACCGCTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5