BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16310.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479083 jgi|Araly1|479083|fgenesh2_kg.3__1784__AT3G16310.1 1816 0.0
> Ahg479083 jgi|Araly1|479083|fgenesh2_kg.3__1784__AT3G16310.1
Length=1245
Score = 1816 bits (983), Expect = 0.0
Identities = 1203/1299 (93%), Gaps = 55/1299 (4%)
Strand=Plus/Plus
Query 4 AGGCGCTTGAATTTTGCGTTTTCAGAATC-TTGGTTTCTAGGGTTTCACTTACCTTCCCT 62
|||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||
Sbjct 1 AGGCGCTTGAATTTTGCGATTTCAGAATCTTTAGTTTCTAGGGTTTCGCTTACCTTCCCT 60
Query 63 CCGCGCCCTTGAGCTCTCTACCTGAGCTTCTCCGGGATTCCTAAAGCTGAAATTCAAACA 122
||||||| |||||||| | |||||||||| |||||||||||||||||||||||| |||||
Sbjct 61 CCGCGCCATTGAGCTC-CGACCTGAGCTTTTCCGGGATTCCTAAAGCTGAAATTGAAACA 119
Query 123 CCTCCATTTTCATCCTCAAGGGAGATAAATAAAACTCTATTGAGTAGAAAATGAGTGCTG 182
||||||||| |||| || |||| | | || || |||||||||||||
Sbjct 120 CCTCCATTTGCATCTTC-AGGG-G--------------A--GA-TA-AAAATGAGTGCTG 159
Query 183 CAGCACACAGGACTCCTAAATCAGGGAGGCAATCTCTGCTATTTCAAGATTTAGCTTCTC 242
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 160 CAGCTCACAGGACTCCTAAATCAGGGAGGCAATCTTTGCTATTTCAAGATTTAGCTTCTC 219
Query 243 CTGTTTCAGCACGTAGAGGGAAATTCTCGAGTCCGGGACAGGCAGCTGCGGTATCTGCAC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CTGTTTCAGCACGTAGAGGGAAATTCTCGAGTCCGGGACAGGCAGCTGCGGTATCTGCAC 279
Query 303 TATGGCGTGAGAATTTCGGAGGATCTGATCTTCCACCACCTCCAATGTATACTTTGGATG 362
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 280 TATGGCGTGAAAATTTCGGAGGATCGGATCTTCCACCACCTCCAATGTATACATTGGATG 339
Query 363 ACCGGTCCGATTTCTCTCCTGAGTCTGGTATTGCAGACTACTCTGCGTCTCCAGATGCTA 422
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 340 ACCGGTCGGATTTCTCTCCTGAGTCTGGCATTGCAGACTACTCTGCGTCTCCAGATGCTA 399
Query 423 AGTCTGACAGAAGAACACCATTCCAGAGTTCTGGAAAGAATATTGTAACTCCTGGTAAAG 482
| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 400 AATCTGATAGAAGAACGCCATTCCAGAGTTCTGGAAAGAATATTGTAACTCCCGGTAAAG 459
Query 483 GAAAGTTGGAAGCAAGCCCTTCTTTTTCTCTACTGAATGCACAACAGAGTCAGCAAGTTT 542
||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 460 GAAAGTTGGAAACAAGCCCCTCGTTTTCTCTATTGAATGCACAACAGAGTCAGCAAGTTT 519
Query 543 CAGGGAGTCCGAGTTGGTGGTCGCAGTCAAAGGCAGGTAGTAGTACCGAGCAGGATGATA 602
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 520 CAGGGAGTCCGAGTTGGTGGTCGCAGTCAAAGGCAGGTAGTAGTATGGAGCAGGATGATA 579
Query 603 AAGGGAAGGGATCTCCTGTAGAAGGGGTGGTTCAGCCAGGTGCATTGGTCACTCTTCCGC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AAGGGAAGGGATCTCCTGTAGAAGGGGTGGTTCAGCCAGGTGCATTGGTCACTCTTCCGC 639
Query 663 CGCCAAGAGAAGTTGCTAGGCCAGAGGTTCAGAGGCAGATTATACCTACAGGAAACCTTG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CGCCAAGAGAAGTTGCTAGGCCAGAGGTTCAGAGGCAGATTATACCTACAGGAAACCTTG 699
Query 723 ATGAGGAAGAGTGGGTCACTGTCTATGGATTTTCTCCAGGTGATACAAATTTAGTACTAC 782
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 700 ATGAGGAAGAGTGGGTCACTGTCTATGGATTTTCTCCAGGTGATACAAATTTGGTACTAC 759
Query 783 GGGAGTTTGAAAAATGTGGTATGGTCTTGAAACATGTTCCTGGTCCAAGAAATGCCAACT 842
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 760 GGGAGTTTGAAAAGTGTGGTATGGTCTTGAAACATGTTCCTGGTCCAAGGAATGCCAACT 819
Query 843 GGATGCACATCCTCTACCAGAACCGGTCTGATGCACATAAGGCGCTGAACAAAGCAGGGA 902
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 820 GGATGCACATCCTCTACCAGAACCGGTCTGATGCACATAAGGCGCTCAACAAAGCCGGGA 879
Query 903 TGATGATAAACGGAGTTGTAATAGTAGGAGTGAAGCCAGTAGACCCAATACAGAAGCAAG 962
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 880 TGATGATAAACGGAGTGGTTATAGTAGGAGTGAAGCCAGTAGACCCTATACAGAAGCAAG 939
Query 963 CGTTAAACGAGAGACTCAACAACCAAGGATTCATGCCTTTACCTCCACCATCATCCACTA 1022
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CTTTAAACGAGAGACTCAACAACCAAGGATTCATGCCTTTACCTCCACCATCATCCACTA 999
Query 1023 GAAACACTGCTCGACCCCTGTCTCGTCCTCAGTACTTGCAAAACGGCAGCGCTTTCTCTC 1082
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1000 GAGACACTGCTCGACCCTTGTCTCGTCCTCAGTACTTGCAAAACGGCAGCGCTTTCTCCC 1059
Query 1083 CTCAACCAAGTGGTGGCGCTATGGCCTCTCCGTCAAAGTCAATGGTCTCAAAGTTCTTTG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTCAACCAAGTGGTGGCGCTATGGCCTCTCCGTCAAAGTCAATGGTCTCAAAGTTCTTTG 1119
Query 1143 ACTTGATGTTCGGTGTTTAAAAGCTACTTCAATGGCATTTCCCGAATGATTCTTCTTTAC 1202
||||||||||||| |||||||||| |||||||| | | | ||
Sbjct 1120 ACTTGATGTTCGGAGTTTAAAAGCCACTTCAAT----T------A------C------AC 1157
Query 1203 ACATAGTTTGAAGTTTTTGAGAGCAGAGTGGCTAAGTAAATCTTAGAGCGTGGTCAAAAT 1262
| |||||||||||||||||| | |||||||| ||||||||||||| | ||||||
Sbjct 1158 A--TAGTTTGAAGTTTTTGAG-G-AGAGTGGCAAAGTAAATCTTAG----T---CAAAAT 1206
Query 1263 TAAAAATTGTAAGAGGTGTTTCAAATTGTCTTTTGTATT 1301
|||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TAAAAATTGTAAGAGGTGTTTCAAATTGTCTTTTGTATT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5