BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16320.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479084 jgi|Araly1|479084|fgenesh2_kg.3__1785__AT3G16320.1 3666 0.0
Ahg345526 jgi|Araly1|345526|fgenesh1_pg.C_scaffold_4001868 913 0.0
Ahg934447 jgi|Araly1|934447|scaffold_402435.1 617 9e-176
Ahg921580 jgi|Araly1|921580|scaffold_102861.1 165 1e-39
> Ahg479084 jgi|Araly1|479084|fgenesh2_kg.3__1785__AT3G16320.1
Length=2334
Score = 3666 bits (1985), Expect = 0.0
Identities = 2227/2342 (95%), Gaps = 23/2342 (1%)
Strand=Plus/Plus
Query 4 ATGGAGAATCTACTGGCGAATTGTGTCCAGAAAAACCTTAACCATTTTATGTTCACCAAT 63
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGGAGAATCTACTGGCGAATTGTGTCCAGAAAAACCTCAACCATTTTATGTACACCAAT 60
Query 64 GCTATCTTCCTTTGCGAACTTCTTCTCGCCCAATTTCCATCTGAGGTGAACCTGCAATTG 123
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCCATCTTCCTTTGCGAACGTCTTCTCGCCCAATTTCCCTCTGAGGTGAACCTGCAATTG 120
Query 124 TTAGCCAGGTGTTACTTGAGTAACAGTCAAGCTTATAGTGCATATTATATCCTTAAAGGT 183
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TTAGCTAGGTGTTACTTGAGTAACAGTCAAGCTTATAGTGCATATTATATCCTCAAAGGT 180
Query 184 TCAAAAACGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGATCTTCTT 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAAAAATGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGATCTTCTT 240
Query 244 GGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGCTGAAGAAGTTCCTGGTGGT 303
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 241 GGAGAGGCTGAAGCTGCATTGTTGCCCAGTGAAGATTATGTTGAAGAAGTTCCTGGTGGT 300
Query 304 GCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTCTGGGAGGAAGAACTGTTCA 363
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 301 GCAGCTGGGCATTATCTTCTTGGTCTTATATATAGACATTCTGGGAGGAAGAACAGTTCA 360
Query 364 ATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTGTTGGGAAGCATATGGAGAA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTGTTGGGAAGCATATGGAGAA 420
Query 424 CTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTTCGGGAATGTTGCTTCCCAG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTTCGGGAATGTTGCTTCCCAG 480
Query 484 CGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAGCTTCTCAGAAGGAGCAACCATAGAC 543
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 481 CGTCTTCAGATAACTTGTGTAGAACAAAGAATAAACTTCTCAGAAGGAGCAACCGTAGAC 540
Query 544 CAGATTACAGATTCTGATAAGGCCTTAAAAGATACAGGTTTATCGCAAACAGAACACATT 603
||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||
Sbjct 541 CAGCTTACAGATTCTGATAAGGCCTCAAAAGATACAAGTTTATGGCAAACAGAACACTTT 600
Query 604 CCAGGAGAGAACCAACAAGATCTGAAAATTATGCAGCAGCCTGGAG-A--TATTCCACCA 660
||||||||||||||| ||||||||||||| | |||||||||||||| | |||||| |||
Sbjct 601 CCAGGAGAGAACCAAGAAGATCTGAAAATAAAGCAGCAGCCTGGAGCAGATATTCCGCCA 660
Query 661 AATACTGACAGGCAACTTAGTACAAACGGATGGGACTTGAACACACCTTCTCCAGTGCTT 720
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GATACTGACAGGCAACTTAATACAAATGGATGGGACTTGAACACACCTTCTCCAGTGCTT 720
Query 721 TTACAGGTAATGGATGCTCTACCGCCTCTGCTTCTTAAGAATATGCGTCGTCCAGCAGTG 780
| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TCGCAGGTAATGGATGCTCCACCGCCTCTGCTTCATAAGAATATGCGTCGTCCAGCAGTG 780
Query 781 GAAGGATCTTTGATGTCTGTACATGGAGTGCGTGTGCGTCGAAGAAACTTTTTTAGTGAA 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 781 GAAGGATCTTTGATGTCTGTACATGGAGTGCGTGCGCGTCGAAGAAACTTTTTTAATGAA 840
Query 841 GAATTGTCAGCAGAGGCTCAAGAAGAATCTGGGCGCCGCCGTAGTGCTAGAATAGCAGCA 900
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GAATTGTCAGCAGAGGCTCCAGAAGAATCTGGGCGTCGCCGTAGTGCTAGAATAGCAGCA 900
Query 901 AGGAAAAAGAATCCTATGTCGCAGTCATTTGGAAAAGATTCCCATTGGTTACATCTTTCA 960
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAGAAAGATTCCTATGTCGCAGTCATTTGGAAAAGATTCCCATTGGTTACATCTTTCA 960
Query 961 CCTTCCGAGTCAAACTATGCACCTTCTCTTTCCTC-GATGATTGGAAAATGCAGAATCCA 1019
||||| ||| |||||| |||||||||||||||||| | |||||||||||||||||| |||
Sbjct 961 CCTTCTGAGACAAACTGTGCACCTTCTCTTTCCTCCG-TGATTGGAAAATGCAGAACCCA 1019
Query 1020 AAGCAGCAAAGAAGCAACGACGTCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGA 1079
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGCAGCAAGGAAGCAACAACATCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGA 1079
Query 1080 TGATGAGGAAAAGTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTTATTTCTGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TGATGAGGAAAAGTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTCATTTCTGG 1139
Query 1140 AATTTCAGAAGTGCTAAGCCTTCTGAAAATTCTTGGAGATGGCCACAGGCATTTACATAT 1199
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 AATTTCAGAAGTGCTAAACCTTCTGAAAATTCTTGGAGATGGCCATAGGCATTTACATAT 1199
Query 1200 GTACAAGTGTCAGGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACAATAC 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 GTACAACTGTCAGGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACGATAC 1259
Query 1260 ACACTGGGTTCTCATGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGC 1319
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACACTGGGTTCTCTTGCAAGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGC 1319
Query 1320 TGACTCT-TCCTTTACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATA 1378
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGACTCTGTC-TTTACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATA 1378
Query 1379 CATACTCCACTGTTCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGG 1438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CGTACTCCACTGTTCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGG 1438
Query 1439 AACTGATTTCAGTTGATCGCCTGTCTCCAGAATCCTGGTGTGCAGTTGGGAACTGTTACA 1498
| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1439 AGCTGATTTCTGTTGATCGCCTGTCTCCAGAATCCTGGTGTGCTGTAGGGAACTGTTACA 1498
Query 1499 GTTTGCGTAAGGATCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTTTGCGTAAGGATCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATG 1558
Query 1559 AAAGATTCACATATGCACATACCCTTTGTGGCCACGAGTTTGCCGCATTGGAAGAATTCG 1618
||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1559 AAAGATTCACATACGCGCATACCCTTTGTGGTCACGAGTTTGCCGCATTGGAAGAATTTG 1618
Query 1619 AGGATGCAGAGAGATGCTACCGGAAGGCTCTGGGCATAGATACGAGACACTATAATGCAT 1678
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1619 AGGATGCAGAGAGATGCTACAGGAAGGCTCTGGGCATAGATACAAGACACTATAATGCAT 1678
Query 1679 GGTACGGTCTTGGAATGACCTATCTTCGTCAGGAGAAATTCGAGTTTGCGCAGCATCAAT 1738
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1679 GGTACGGTCTTGGAATGACCTATCTTCATCGGGAGAAATTCGAGTTTGCGCAGCATCAAT 1738
Query 1739 TTCAACTGGCTCTCCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TTCAACTGGCTCTCCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTG 1798
Query 1799 CTTTGCATGAGTCAAAGAGAAACGATGAGGCGTTGATGATGATGGAGAAGGCTGTACTCA 1858
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1799 CTTTGCATGAGTCAAAGAGGAACGATGAGGCGTTAATGATGATGGAGAAGGCTGTACTCA 1858
Query 1859 CTGATGCAAAGAATCCGCTCCCCAAGTACTACAAGGCTCAC-ATATTAACCAGCCTAGGT 1917
|||||| |||||||||||||| ||||||||||| ||| || ||||||| |||||| |||
Sbjct 1859 CTGATGTGAAGAATCCGCTCCCGAAGTACTACAAAGCT-ACCATATTAAACAGCCTCGGT 1917
Query 1918 GATTATCACAAAGCACAG--AAAGTTTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAAA 1975
|||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1918 GATTATCACAAAGC-C-GTTAAAGTCTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAGA 1975
Query 1976 GCAGTGTCCATGCATCGCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCG 2035
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GCAGTGTCCATGCGTTGCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCG 2035
Query 2036 TGTTACATTTCGGCATTGCTTTGGATTTAAGCCCTTCTCCATCTGATGCTGTCAAGATAA 2095
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TGTTACATTTCGGTATTGCTTTGGATTTAAGCCCTTCTCCATCTGATGCTGTCAAGATAA 2095
Query 2096 AGGCTTACATGGAGAGGTTGATACTACCAGACGAGCTGGTGACGGAGGAAAATTTGTAGA 2155
|| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 2096 AGACTTACATGGAGAGGTTGATACTACCAGACGAACTGGCGACGGAGGAGAATTTGTAGA 2155
Query 2156 TT--T--A---TTGTGCAGGTAATACACCAGATTATGTTTCTCATATAACCCAAAGTCAT 2208
|| | | |||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2156 TTCATTGACCATTGTGCAGGTAATAAACCAAATTATGTTTCTCATATAACCCAAAGTCAT 2215
Query 2209 CTGTAATTTTTCTCATCTTTAGATCAGTCTTGTGGACTAACCCTAAAACAAAACTGATTA 2268
|| ||||||| |||||||| |||| ||| || |||| |||||||||||||||||||||||
Sbjct 2216 CTTTAATTTT-CTCATCTTAAGATGAGTGTTATGGATTAACCCTAAAACAAAACTGATTA 2274
Query 2269 TATAAACTTAGAGGGTAATATTACAGAAAATTGTATAGAGTTGGGTTGAATTTTCATTTC 2328
|||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||||
Sbjct 2275 TATAAAATTAGAGGGTAAT-T-ACAGAAATTTGTATAGAGTTGGGTTGAATTTGCATTTC 2332
Query 2329 TT 2330
||
Sbjct 2333 TT 2334
> Ahg345526 jgi|Araly1|345526|fgenesh1_pg.C_scaffold_4001868
Length=1752
Score = 913 bits (494), Expect = 0.0
Identities = 542/566 (96%), Gaps = 0/566 (0%)
Strand=Plus/Plus
Query 1032 AGCAACGACGTCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGATGATGAGGAAAA 1091
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 714 AGCAACGACGTCAAGCCAGTCTGTAAATGACATTGGAAGCTCTGTTGATGACGAGGAAAA 773
Query 1092 GTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTTATTTCTGGAATTTCAGAAGT 1151
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 774 GTCAAATCCTAGTGAATCTTCCCTGGATCGTTTCAGCCTCATTTCTGGAATTTCAGAAGT 833
Query 1152 GCTAAGCCTTCTGAAAATTCTTGGAGATGGCCACAGGCATTTACATATGTACAAGTGTCA 1211
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 834 GCTAAACCTTCTGAAAATTCTTGGAGATGGCCTCAGGCATTTACATATGTACAACTGTCA 893
Query 1212 GGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACAATACACACTGGGTTCT 1271
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGAAGCTTTGGTGGTATATCAAAAGCTATCTCAGAAACAATACAATACACACTGGGTTCT 953
Query 1272 CATGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGCTGACTCTTCCTT 1331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 954 CTTGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGCTGACTCTGCCTT 1013
Query 1332 TACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATACATACTCCACTGT 1391
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1014 TACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATACGTACTCCACTGT 1073
Query 1392 TCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGGAACTGATTTCAGT 1451
|||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1074 TCTTCATCACCTGAAAGAAGAGATGAGGTTAGGCTATCTGGCTCAGGAGCTGATTTCAGT 1133
Query 1452 TGATCGCCTGTCTCCAGAATCCTGGTGTGCAGTTGGGAACTGTTACAGTTTGCGTAAGGA 1511
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 TGACCGCCTATCTCCAGAATCCTGGTGTGCTGTTGGGAACTGTTACAGTTTGCGTAAGGA 1193
Query 1512 TCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATGAAAGATTCACATA 1571
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1194 TCATTATACTGCTCTCAAAATGTTTCGGAGAGCTATCCAACTGAATGAAAGATTCACATA 1253
Query 1572 TGCACATACCCTTTGTGGCCACGAGT 1597
||| |||||| ||||||| |||||||
Sbjct 1254 TGCGCATACCTTTTGTGGTCACGAGT 1279
Score = 688 bits (372), Expect = 0.0
Identities = 465/506 (92%), Gaps = 21/506 (4%)
Strand=Plus/Plus
Query 225 CTTTAAGTTGGATCTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGC 284
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 CTTCAAATTGGATCTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGT 77
Query 285 TGAAGAAGTTCCTGGTGGTGCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTC 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TGAAGATGTTCCTGGTGGTGCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTC 137
Query 345 TGGGAGGAAGAACTGTTCAATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTG 404
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 138 TGGGAGGAACAACAGTTCAATACAACAGTTTAGGATGGCATTGTCATTTGATCCGTTGTG 197
Query 405 TTGGGAAGCATATGGAGAACTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTT 464
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 198 TTGGGAAGCATATAGAGAACTTTGTAGTTTAGGTGCCGCTGAAGAATCCTCAACAGTTTT 257
Query 465 CGGGAATGTTGCTTCCCAGCGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAGCTTCTC 524
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 258 CGGGAATGTTGCTTCCCAGCGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAACTTCTC 317
Query 525 AGAAGGAGCAACCATAGACCAGATTACAGATTCTGATAAGGCCTTAAAAGATACAGGTTT 584
|||||||||||||||||||||| | || | | |||||||||| ||||
Sbjct 318 AGAAGGAGCAACCATAGACCAG----C---TT---A-----C---AAAAGATACAAGTTT 359
Query 585 ATCGCAAACAGAACACATTCCAGGAGAGAACCAACAAGATCTGAAAATTATGCAGCAGCC 644
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 360 ATCGCAAACAGAACACTTTCCAGGAGAGAACCAACAAGATCTGAAAACTAAGCAGCAGCC 419
Query 645 TGGAG-A--TATTCCACCAAATACTGACAGGCAACTTAGTACAAACGGATGGGACTTGAA 701
||||| | |||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
Sbjct 420 TGGAGCAGATATTCCGCCAGATACTGACAGGCAACTTAATACAAACGGATGGGATTTGTA 479
Query 702 CACACCTTCTCCAGTGCTTTTACAGG 727
||||||||||| ||||||||||||||
Sbjct 480 CACACCTTCTCAAGTGCTTTTACAGG 505
Score = 621 bits (336), Expect = 7e-177
Identities = 409/445 (92%), Gaps = 2/445 (0%)
Strand=Plus/Plus
Query 1711 GAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCTCCAAATAAATCCAAGATCT 1770
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GAGAAATCCGAGTTTGCGCAGCATCAATTTCAACTGGCTCTCCAAATAAATCCAAGATCT 1368
Query 1771 TCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTCAAAGAGAAACGATGAGGCG 1830
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1369 TCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTCAAAGAGGAACAATGAGGCG 1428
Query 1831 TTGATGATGATGGAGAAGGCTGTACTCACTGATGCAAAGAATCCGCTCCCCAAGTACTAC 1890
|||| |||||||||||||||||||||||||||||| ||||||||| || | ||||||| |
Sbjct 1429 TTGAGGATGATGGAGAAGGCTGTACTCACTGATGCGAAGAATCCGGTCGCGAAGTACTTC 1488
Query 1891 AAGGCTCACATATTAACCAGCCTAGGTGATTATCACAAAGCACAGAAAGTTTTAGAAGAG 1950
|| ||| | ||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 1489 AAAGCTAATATATTAAATAGTCTCGGTGATTATCACAAAGCCCAGAAAGTTTTAGAAGAG 1548
Query 1951 CTCAAAGAATGTGCTCCTCAAGAAAGCAGTGTCCATGCATCGCTTGGCAAAATATACAAT 2010
|||||||||||| ||||||||| ||||||||||||| | ||||||||||| |||||||
Sbjct 1549 CTCAAAGAATGTTTTCCTCAAGAGGGCAGTGTCCATGCGTTGCTTGGCAAAACATACAAT 1608
Query 2011 CAGCTAAAGCAATACGACAAAGCCGTGTTACATTTCGGCATTGCTTTGGATTTAAGCCCT 2070
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1609 CAGCTAAAACAATACGACAAAGCCCTGTTACATTTCGGCATTGCTTTGGATTTAAGCTCT 1668
Query 2071 TCTCCATCTGATGCTGTCAAGATAAAGGCTTACATGGAGAGGTTGATACTACC-AGACGA 2129
|||| ||||||||||||||||||||||||||||||||||||||||||| | | || |||
Sbjct 1669 TCTCTATCTGATGCTGTCAAGATAAAGGCTTACATGGAGAGGTTGATAG-AGCGAGTCGA 1727
Query 2130 GCTGGTGACGGAGGAAAATTTGTAG 2154
|||| ||||||||| |||||||||
Sbjct 1728 GCTGAAGACGGAGGAGAATTTGTAG 1752
Score = 274 bits (148), Expect = 2e-72
Identities = 171/182 (94%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 854 AGGCTCAAGAAGAATCTGGGCGCCGCCGTAGTGCTAGAATAGCAGCAAGGAAAAAGAATC 913
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 503 AGGCTCCAGAAGAATCTGGGCGTCGCCGTAGTGCTAGAATAGCAGCAAGGAAAAAGATTC 562
Query 914 CTATGTCGCAGTCATTTGGAAAAGAT-TCCCATTGGTTACATCTTTCACCTTCCGAGTCA 972
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 563 CTATGTCGCAGTCATTAGGAAAAGATCTCC-ATTGGTTACATCTTTCACCTTCTGAGTCA 621
Query 973 AACTATGCACCTTCTCTTTCCTCGATGATTGGAAAATGCAGAATCCAAAGCAGCAAAGAA 1032
|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 622 AACTGTGCACCTTCTCTTTCCTCGGTGATTGGAAAATGCAGAACCCAAAGCAGCAAGGAA 681
Query 1033 GC 1034
||
Sbjct 682 GC 683
> Ahg934447 jgi|Araly1|934447|scaffold_402435.1
Length=1143
Score = 617 bits (334), Expect = 9e-176
Identities = 402/436 (92%), Gaps = 0/436 (0%)
Strand=Plus/Plus
Query 1632 ATGCTACCGGAAGGCTCTGGGCATAGATACGAGACACTATAATGCATGGTACGGTCTTGG 1691
||||| |||||||||||||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 85 ATGCTTCCGGAAGGCTCTGGGCATAGATACAAGACACTATAACGCCTGGTTCGGTCTTGG 144
Query 1692 AATGACCTATCTTCGTCAGGAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCT 1751
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 AAGGATCTATCTTTGTCAGGAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCT 204
Query 1752 CCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTC 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTC 264
Query 1812 AAAGAGAAACGATGAGGCGTTGATGATGATGGAGAAGGCTGTACTCACTGATGCAAAGAA 1871
|||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 265 AAAGAGGAACAATGAGGCGTTGAGGATGATGGAGAAGGCTGTACTCACTGATGCGAAGAA 324
Query 1872 TCCGCTCCCCAAGTACTACAAGGCTCACATATTAACCAGCCTAGGTGATTATCACAAAGC 1931
|||| || | ||||||| ||| ||| | ||||||| || || |||||||||||||||||
Sbjct 325 TCCGGTCGCGAAGTACTTCAAAGCTAATATATTAAATAGTCTCGGTGATTATCACAAAGC 384
Query 1932 ACAGAAAGTTTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAAAGCAGTGTCCATGCATC 1991
|||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
Sbjct 385 CCAGAAAGTTTTAGAAGAGCTCAAAGAATGTTTTCCTCAAGAGGGCAGCGTCCATGCGTT 444
Query 1992 GCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCGTGTTACATTTCGGCAT 2051
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 445 GCTTGGCAAAACATACAATCAGCTAAAACAATACGACAAAGCCCTGTTACATTTCGGCAT 504
Query 2052 TGCTTTGGATTTAAGC 2067
||||||||||||||||
Sbjct 505 TGCTTTGGATTTAAGC 520
> Ahg921580 jgi|Araly1|921580|scaffold_102861.1
Length=193
Score = 165 bits (89), Expect = 1e-39
Identities = 106/114 (93%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 178 AAAGGTTCAAAAACGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGAT 237
||| ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 10 AAA-GTTCAAAAATGACTCGGTCTCGGTATTTATTTGCATTCTCATCCTTTAAGTTGGAT 68
Query 238 CTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGCTGAAGAA 291
|||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 69 CTTCTTGGAGAGGCTGAAGCTGCATTGTTGACCAGTGAAGATTATGTTGAAGAA 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5