BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16330.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479085 jgi|Araly1|479085|fgenesh2_kg.3__1786__AT3G16330.1 1112 0.0
Ahg934453 jgi|Araly1|934453|scaffold_402441.1 752 0.0
Ahg934447 jgi|Araly1|934447|scaffold_402435.1 739 0.0
> Ahg479085 jgi|Araly1|479085|fgenesh2_kg.3__1786__AT3G16330.1
Length=858
Score = 1112 bits (602), Expect = 0.0
Identities = 792/879 (90%), Gaps = 32/879 (4%)
Strand=Plus/Plus
Query 1 TAAGCAAATATCAAAGCCAAGAAAAACAAAACAAA-ACAAGAGTCTCATTATCTCTCTAA 59
||| ||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||
Sbjct 1 TAACCAAATATCAAAGCCACCAAAAA-AAAA-AAACACAAGAGTCTCATTATCTCTCTAA 58
Query 60 TTCTAAAGATGGAGAAGAATATATCAATAAGCAAGAAGCTAGGGAACATTGTACGTTTTG 119
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 59 TTCCAAAGATGGAGAAGAATGTATCAACAAGCAAGAAGCTAGGGAACATTGTACGTTTTG 118
Query 120 TCTTGTACATGTTACACAAAGGCATTTCTAAGCAAAAGCTCCTAGCCGACTTTAATGCCA 179
||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 119 TCTTGTACATGATACACAAAGGCATTTCAAAGCAAAAGCTCCTTGCCGACTTTAATGCCA 178
Query 180 CTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCGCCGCCGTGTCCCAG-----GC-T 233
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 179 CTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCGCCGCCGTTTCCCAGCCACCGCCT 238
Query 234 CGGCTGTTGCGTCCCATCCACAGAACGAGTACGAGTTTAGCTGCAGCGACACTCCTAACT 293
| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 239 CCGCTGTTGCGTCCCATTCGCAGAAAGAGTACGAGTTTAGCTGCAGCGACACTCCCAACT 298
Query 294 ACACGTTCCCCTTCAACATGGCTGCCTTCAAGAAGAAGAGCCACCACAACAGCCTCTTCT 353
||| |||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 299 ACATATTCCCCTTTAACATGGCCGCCTTCAAGAAGAAGAGCCACCACAACAGTCTTTTCT 358
Query 354 CCTGTGGTCAAGCGCCACCGACCCTTGATGACGACACTTCCGTCTCCAGAGCCGTTCTAG 413
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 359 CGTGTGGTCACGCGCCACCGACCCTTGACGACGACACTTCCGTCTCCAGAGCCGTCCTAG 418
Query 414 AGCTGCTCAACAGCGGTGGAGATCATGATCAGGGAAGTAACACGCCGGCTTTTTCCATT- 472
|||||||||||||||| |||||||||||||||||||||||||| || ||||| || | |
Sbjct 419 AGCTGCTCAACAGCGGCGGAGATCATGATCAGGGAAGTAACACACCAGCTTTGTC-AGTC 477
Query 473 GAGGCCTTGACGGCGTTATCTCCCTACCTGCCGG-GATTTGGACGGAGTACTTCGTCCGT 531
||||||||||||||||||||||| ||| |||||| | ||||||||||||||| |||| ||
Sbjct 478 GAGGCCTTGACGGCGTTATCTCCTTACTTGCCGGTG-TTTGGACGGAGTACTCCGTCAGT 536
Query 532 GAGGCCTTTACGGGTAACGGACTCACCATTCCCGTTAAGAGAAGAGGGTGACGTGGCTAA 591
||||||||||||||||||||||||||| || |||||| | ||||| ||||||||| ||||
Sbjct 537 GAGGCCTTTACGGGTAACGGACTCACCGTTTCCGTTACGGGAAGATGGTGACGTGTCTAA 596
Query 592 CGGACATGTGGACAAGGCAGCGGATGAGTTTATAAAGAAGTTTTACAAGAACTTGTATCA 651
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 CGGATACGTGGACAAAGCAGCGGATGAGTTTATAAAGAAGTTTTACAAGAACTTGAATCA 656
Query 652 GCAAAAGAAGATGATTGAGTCCTCACCTAATTAAATCTCCTTTTTTGGCCTTTCCCCTTA 711
||||||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 657 GCAAAAGAAGATGATCGAGTCCTCACCTAATTAAATCTCCTTTA----C-TTTC---T-- 706
Query 712 GTTTCTCTCAATCTCTCTTCCTAAATATTTCCTCTATTTTTGGCTGATTTAGTTCCGAAG 771
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ----CTCT-A-TCCCTCTTCCTAAATATTTCCTCTATTTTTGGCTGATTTAGTTCCGAAG 760
Query 772 TTGTAATAATATTCTTGGTTGGAGGA--GGCCGGTGGGGATTATTTCCTCATTTCTTGAT 829
|||||||||||||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 761 TTGTAATAATATTCTTGGTTGG-GCCTTGGAGGGTGGGGATTATTTTCTCATTTCTTGAT 819
Query 830 AAAATTATATTATCATGAATAAAATATTATTCAGGTGGC 868
||||||| ||||||| |||||||||||||||| ||||||
Sbjct 820 AAAATTAGATTATCACGAATAAAATATTATTCGGGTGGC 858
> Ahg934453 jgi|Araly1|934453|scaffold_402441.1
Length=604
Score = 752 bits (407), Expect = 0.0
Identities = 513/563 (91%), Gaps = 12/563 (2%)
Strand=Plus/Plus
Query 151 GCAA-AAGCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCC 209
|||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 43 GCAAGAAGCTCCTCGCCGACTTTAAAGCCACTCTCAAACGCGGCAAGAATCTTATGTTCC 102
Query 210 ACAACCGCCGCCGTGTCCCAG-----G-CTCGGCTGTTGCGTCCCATCCACAGAACGAGT 263
||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||
Sbjct 103 ACAACCGCCGCCGTGTCCCAGTCACCGCCTCGGCTGTTGCGTCCCATCCGCAGAAAGAGT 162
Query 264 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTC-AACATGGCTGCCTTC 322
|||||||||||||||||||||||||||||||||| |||||| || |||||||| |||| |
Sbjct 163 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACATTCCCC-TCTAACATGGCCGCCTCC 221
Query 323 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGAT 382
|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 222 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCGTATGGTCACGCGCCACCGACCCTTGAT 281
Query 383 GACGACACTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGAT 442
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 282 GACGACACTTCCGTCTCCAGAGCCGTCCTAGAGCTGCTCAACAGCGGCGGAAATCATGAT 341
Query 443 CAGGGAAGTAACACGCCGGCTTTTTCCATT-GAGGCCTTGACGGCGTTATCTCCCTACCT 501
||||||| |||||| || |||| || | | ||||||||||||||||||||| | ||| |
Sbjct 342 CAGGGAAATAACACCCCACCTTTGTC-AGTCGAGGCCTTGACGGCGTTATCTACTTACTT 400
Query 502 GCCGGGATTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATT 561
||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||
Sbjct 401 GCCCGGATTTGGACGGAGTAATCCGTCAGTGAGGCCTTTACGGGTAACGGACTCACCGTT 460
Query 562 CCCGTTAAGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTT 621
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 461 TCCGTTACGGGAAGATTGTGACGTGGCTAACGGATATGTGGACAAGGCAGCGGATGAGTT 520
Query 622 TATAAAGAAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAA 681
| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 521 TGTAAAGAAGTTTTACAAAAACTTGAATCAGCAAAAGAAGATGATTGAGTCCTCAACTAA 580
Query 682 TTAAATCTCCTTTTTTGGCCTTT 704
||||||||| |||||||||||||
Sbjct 581 TTAAATCTC-TTTTTTGGCCTTT 602
> Ahg934447 jgi|Araly1|934447|scaffold_402435.1
Length=1143
Score = 739 bits (400), Expect = 0.0
Identities = 506/556 (91%), Gaps = 11/556 (2%)
Strand=Plus/Plus
Query 157 GCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCG 216
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 589 GCTCCTCGCCGACTTTAAAGCCACTCTCAAACGCGGCAAGAATCTTATGTTCCACAACCG 648
Query 217 CCGCCGTGTCCCAG-----G-CTCGGCTGTTGCGTCCCATCCACAGAACGAGTACGAGTT 270
|||||||||||||| | |||||||||| |||||||||| ||||| |||||||||||
Sbjct 649 CCGCCGTGTCCCAGTCACCGCCTCGGCTGTTACGTCCCATCCGCAGAAAGAGTACGAGTT 708
Query 271 TAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTC-AACATGGCTGCCTTCAAGAAGA 329
||||||||||||||||||||||||||| |||||| || |||||||| |||| ||||||||
Sbjct 709 TAGCTGCAGCGACACTCCTAACTACACATTCCCC-TCTAACATGGCCGCCTCCAAGAAGA 767
Query 330 AGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGATGACGACA 389
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 768 AGAGCCACCACAACAGCCTCTTCTCGTATGGTCACGCGCCACCGACCCTTGATGACGACA 827
Query 390 CTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGATCAGGGAA 449
||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 828 CTTCCGTCTCCAGAGCCGTCCTAGAGCTGCTCAACAGCGGCGGAAATCATGATCAGGGAA 887
Query 450 GTAACACGCCGGCTTTTTCCATT-GAGGCCTTGACGGCGTTATCTCCCTACCTGCCGGGA 508
|||||| || |||| || | | ||||||||||||||||||||| | ||| |||| |||
Sbjct 888 ATAACACCCCACCTTTGTC-AGTCGAGGCCTTGACGGCGTTATCTACTTACTTGCCCGGA 946
Query 509 TTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATTCCCGTTA 568
||||||||||||| | |||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 947 TTTGGACGGAGTAATCCGTCAGTGAGGCCTTTACGGGTAACGGACTCACCGTTTCCGTTA 1006
Query 569 AGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTTTATAAAG 628
| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1007 CGGGAAGATTGTGACGTGGCTAACGGATATGTGGACAAGGCAGCGGATGAGTTTGTAAAG 1066
Query 629 AAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAATTAAATC 688
||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1067 AAGTTTTACAAAAACTTGAATCAGCAAAAGAAGATGATTGAGTCCTCAACTAATTAAATC 1126
Query 689 TCCTTTTTTGGCCTTT 704
|| |||||||||||||
Sbjct 1127 TC-TTTTTTGGCCTTT 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5