BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16350.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479087 jgi|Araly1|479087|fgenesh2_kg.3__1788__AT3G16350.1 2037 0.0
> Ahg479087 jgi|Araly1|479087|fgenesh2_kg.3__1788__AT3G16350.1
Length=1472
Score = 2037 bits (1103), Expect = 0.0
Identities = 1384/1510 (92%), Gaps = 58/1510 (4%)
Strand=Plus/Plus
Query 30 TTGTGTATACACAAATCTTA--TTCAACGAATCATTTATCACCAAAAGGTTCTCTC-TTT 86
|||||||||| | ||||||| ||| ||||| ||||||| |||||||||||||||| |||
Sbjct 1 TTGTGTATACGCTAATCTTATTTTC-ACGAAGCATTTATTACCAAAAGGTTCTCTCTTTT 59
Query 87 TTTGTTTGTTTCTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGCAACAATGGG 146
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 TTTGTTTGTTTGTGTCTTGTGTGAATGACTCGTCGGTGTTCGCATTGTAGTAACAATGGG 119
Query 147 CACAATTCACGCACGTGTCCAACGCgtggtggtggcacgtgcggtggaagtggcggagga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CACAATTCACGCACGTGTCCAACGCGTGGTGGTGGCACGTGCGGTGGAAGTGGC------ 173
Query 207 ggaggaggtggtggtggaggagggtctggtTCCTCCTCCGCCGTGAAGTTATTTGGTGTG 266
|||||| ||| ||||| ||| ||||||||||||||||||||||||| || |||
Sbjct 174 GGAGGA------GGT---GGAGGTTCTTGTTCCTCCTCCGCCGTGAAGTTATTCGGCGTG 224
Query 267 AGGTTAACGGATGGCTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCGGCATTG 326
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 225 AGGTTAACGGATGGGTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCTGCATTG 284
Query 327 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTGGCGACG 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 285 GCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTAGCGACG 344
Query 387 TCAAATCTTAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 446
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TCAAATCTCAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAAT 404
Query 447 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGTGAG 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 405 GAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGAGAG 464
Query 507 AGGAAGAGAGGTGTTCCTTGGACTGAAGAGGAACATAGACTATTCTTAGTCGGTCTTCAG 566
|||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct 465 AGGAAGAGAGGTGTTCCTTGGACTGAGGAGGAACACAGGCTATTCTTAGTTGGTCTTCAG 524
Query 567 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACGTCAAGAACTCCT 626
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 AAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACTTCAAGAACTCCT 584
Query 627 ACACAAGTGGCTAGTCATGCTCAAAAGTATTTTATTCGACATACTAGTTCAAGCCGCAGG 686
||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |||
Sbjct 585 ACACAAGTGGCTAGTCATGCTCAGAAGTATTTCATTCGCCATACTAGTTCCAGCCGTAGG 644
Query 687 AAAAGACGGTCTAGCCTCTTCGACATGGTTACAGATGAGATGGTAACCGATTCATCGCCA 746
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 645 AAAAGACGGTCTAGCCTATTCGACATGGTTACCGATGAGATGGTAACTGATTCATCGCCA 704
Query 747 ACACAGGA--AGAG-CA---GACCTTAAACGGTTCCTCTCCAAGCAAGGAACCTGAAAAG 800
|| | || |||| || |||||||||| || ||||||||||||||||||||||||
Sbjct 705 ACGGAAGACCAGAGTCATCAGACCTTAAACCATTTCTCTCCAAGCAAGGAACCTGAAAAC 764
Query 801 AAAAGCTACCTTCCTTCACTTGAGCTCTCACTCAATAATACCACAGAAGCTGAAGAGGTC 860
|||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||
Sbjct 765 AAAATCTACCTTCCTTCACTTGAGCTCTCTCTCAATAATACCACGGAATCTGAAGTGGTC 824
Query 861 GTAGCCACGGCGCCACGACAGGAAAAATCTCAAGAAGCTATAGAACCATCAAATGGTGTT 920
|||||||||||||||| |||||||||| || ||||| ||||||| |||||||| || |||
Sbjct 825 GTAGCCACGGCGCCACCACAGGAAAAAACTGAAGAAACTATAGAGCCATCAAACGGGGTT 884
Query 921 TCACCAATGCTAGTCCCGGGTGGCTTCTTTCCTCCTTGTTTTCCAGTGACTTACACGATT 980
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 885 TCACCAATGGTAGTCCCGGGCGGCTTCTTTCCTCCTTGTTTTCCAGTCACTTACACGATT 944
Query 981 TGGCTCCCTGCG--T-C-ACTTCAC-----GGAACAGAACATGCCTTA-AACGCTGAGAC 1030
||||| |||||| | | ||||||| || ||||||||||||||| || ||||||||
Sbjct 945 TGGCTACCTGCGACTTCCACTTCACTTCATGGTACAGAACATGCCTTAGAA-GCTGAGAC 1003
Query 1031 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAA 1063
Query 1091 CATGGACGAGTTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1150
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CATGGACGAGCTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAAC 1123
Query 1151 CGAAACTTCCCCTTCCCCGCTATCTTTGAGACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1210
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1124 CGAAACTTCCCCTTCCCCTCTATCTTTGAAACTAGAGCCCTCAAGGCCATCAGCGTTTCA 1183
Query 1211 CTCGAATGGCTCGGTTAATGGTGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCTAT 1270
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1184 CTCAAACGGCTCGGTTAATGGCGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCGAT 1243
Query 1271 CTAAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGACCCTGACCGGATTAAAC 1330
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1244 CTGAAAAATCTTTGTTATTGTGTTAAAGAATGAAGAAGGAAGTCCCTGACCGGATTAAAT 1303
Query 1331 CAGAGGATGTTCCTGGTTTAGGACGAAACAAACCAAGCCATAAGCCATTAGAGAGAACAA 1390
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1304 CAAAGGATGTTCCTGGTTTAGGACGAAACAATCCAAGCCATAAGCCATTAGAGAGAA-AA 1362
Query 1391 TTACTTACAAAGGaaaaaaaaaCAGAGCAAACTGTAACAA-AGACTTACCAAACAGTCAA 1449
| | || |||||||||||||||||| |||||||||||||||||||
Sbjct 1363 --A---A-AA------------CAGAGCAAACTGTAACAATAGACTTACCAAACAGTCAA 1404
Query 1450 AAACACATTTCTCAGCATCACGTCATACTTACATAAGATAAGCGTAACTTACAATTTTAC 1509
| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1405 A--CGCATTTCTCAGCATCACGTCATACTTACATAAGCTAAGCGTAATTTACAATTTTAC 1462
Query 1510 CCTTCATTTT 1519
|||||||||
Sbjct 1463 TCTTCATTTT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5