BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16370.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479089 jgi|Araly1|479089|fgenesh2_kg.3__1790__AT3G16370.1 1917 0.0
> Ahg479089 jgi|Araly1|479089|fgenesh2_kg.3__1790__AT3G16370.1
Length=1258
Score = 1917 bits (1038), Expect = 0.0
Identities = 1209/1286 (94%), Gaps = 34/1286 (3%)
Strand=Plus/Plus
Query 4 AAAACACAGGCTGGTTCAGT-TTTTTCCACGAATCAAAAATGGTTGGAGAAATATTGAAT 62
|||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAACAGGCTGGTTCAATATTTTTCCACGAATCAAAAATGGTTGGAGAAATATTGAAT 60
Query 63 AagagagagagagagagagagagagaTAGAGTTTCAGAGTTGACACAACATTGAAGTAAA 122
| |||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 61 -----------A-AGAGAGAGAGAG--AGA--TTCAGAGTTGATACAACATTGAAGTAAA 104
Query 123 CTAAACTCCTAACCTCTTTATCTATG--TGTATATATA-AAACTCAAAAGTACATATAAT 179
||||||||| |||||||||||||||| | |||||||| |||| | |||||||||||||
Sbjct 105 CTAAACTCCAAACCTCTTTATCTATGTATATATATATATAAAC-C-TAAGTACATATAAT 162
Query 180 CTTCACCATTCACACATAGTCACATACCAAAGCAAAAACATGGATCGTTGCACGTCGTCG 239
|||||||||| | | |||||||||||||||||||||||||||||||||||| |||
Sbjct 163 CTTCACCATT----C--A--CACATACCAAAGCAAAAACATGGATCGTTGCACGTCTTCG 214
Query 240 TTTTTGCTTCTCACATTGGTCTCTACCTTGTCCATTCTCCAAATCTCCTTTGCTCAACTT 299
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 215 TTTTTGCTTCTCACGTTGGTCTCTACCTTGTCCTTTCTCCAAATCTCCTTTGCTCAACTT 274
Query 300 GTTCCAGCAATCATGACATTCGGTGACTCTGTAGTTGATGTCGGCAACAACAACTATCTT 359
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 275 GTTCCAGCTATCTTGACATTTGGTGACTCTGTAGTTGATGTCGGCAACAACAACTATCTT 334
Query 360 CCGACCCTTTTCAGAGCTGATTATCCTCCTTATGGCCGTGATTTCGCTAACCACAAAGCC 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 335 CCGACCCTTTTCAGAGCTGATTATCCTCCTTATGGCCGTGATTTTGCTAACCACAAAGCC 394
Query 420 ACCGGTCGTTTCTGCAACGGCAAATTAGCCACTGATATAACTGCTGAGACTTTAGGCTTC 479
||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||||||
Sbjct 395 ACCGGCCGTTTCTGCAACGGCAAATTAGCTACTGATATCACCGCTGAGACTCTAGGCTTC 454
Query 480 ACTAAGTACCCACCAGCTTATCTAAGTCCTGAAGCTTCTGGTAAGAATCTTCTCATTGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 ACTAAGTACCCACCAGCTTATCTAAGTCCTGAAGCTTCTGGTAAGAATCTTCTCATTGGT 514
Query 540 GCTAATTTCGCTTCTGCAGCTTCAGGTTATGATGACAAAGCTGCTCTTCTCAATCACGCG 599
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 515 GCTAATTTCGCTTCTGCAGCTTCAGGTTACGATGACAAAGCTGCTCTTATCAATCACGCG 574
Query 600 ATCCCGTTGTATCAGCAAGTAGAGTATTTCAAGGAATACAAGAGCAAGCTAATAAAAATT 659
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 575 ATCCCATTGTATCAGCAAGTAGAGTACTTCAAGGAATACAAGAGCAAGCTCATAAAAATT 634
Query 660 GCAGGAAGCAAAAAAGCTGATTCGATCATAAAGGGAGCAATCTGTCTCTTAAGTGCAGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCAGGAAGCAAAAAAGCTGATTCGATCATAAAGGGAGCAATCTGTCTCTTAAGTGCAGGA 694
Query 720 AGCAGTGATTTTGTTCAAAACTACTATGTGAATCCTCTGCTTTACAAAGTTTACACTGTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGCAGTGATTTTGTTCAAAACTACTATGTGAATCCTCTGCTTTACAAAGTTTACACTGTT 754
Query 780 GATGCATACGGATCTTTCCTTATCGATAACTTCTCTACATTTATCAAGCAAGTGTATGCG 839
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 755 GATGCGTACGGATCTTTCCTTATCGATAACTTCTCTACATTTATCAAGCAAGTGTATG-G 813
Query 840 G-TTGGAGCAAGGAAGATCGGTGTGACATCTCTGCCTCCAACAGGATGTCTTCCCGCTGC 898
| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 814 GATTGGAGCAAGGAAGATTGGTGTGACTTCTCTGCCTCCAACAGGATGTCTTCCAGCTGC 873
Query 899 AAGAACCCTTTTCGGTTTCCATGAAAAAGGCTGTGTTTCAAGACTCAACACAGATGCTCA 958
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 874 AAGAACTCTTTTTGGTTTTCATGAAAAAGGCTGTGTTTCAAGACTCAACACAGATGCTCA 933
Query 959 AAACTTT-AACAAGAAGCTTAACGCTGCTGCTTCAAAGCTTCAGAAGCAATATTCCGATC 1017
||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 934 AAA-TTTCAACAAGAAGCTTAACGCAGCTGCTTCAAAGCTTCAGAAGCAGTATTCCGGTC 992
Query 1018 TTAAGATTGTTGTCTTCGACATCTACTCTCCACTTTATGATCTTGTTCAGAACCCTTCCA 1077
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 993 TTAAGATTGTTGTCTTCGACATCTTCACTCCACTCTATGATCTTGTTCAGAACCCTTCCA 1052
Query 1078 AATCCGGATTCACGGAAGCAACCAAAGGATGTTGTGGAACAGGAACAGTCGAGACAACTT 1137
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 AATCCGGATTTACGGAAGCAACCAAAGGATGTTGTGGAACAGGAACAGTCGAGACAACTT 1112
Query 1138 CACTCTTGTGCAACCCGAAATCGTTTGGGACATGCTCCAATGCTACTCAGTATGTGTTCT 1197
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1113 CACTCTTGTGCAACCCGAAATCGTTAGGGACTTGCTCCAATGCTACTCAGTATGTGTTCT 1172
Query 1198 GGGACAGTGTGCATCCTTCTGAAGCTGCCAATGAGATTCTTGCCACTGCCCTAATTGGAC 1257
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1173 GGGATAGTGTTCATCCTTCTGAAGCTGCCAATGAGATTCTTGCCACTGCTCTAATTGGAC 1232
Query 1258 AGGGCTTTTCTCTCCTCGGTTGATCT 1283
|||| |||||||||||||||||||||
Sbjct 1233 AGGGATTTTCTCTCCTCGGTTGATCT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5