BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16380.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904586 jgi|Araly1|904586|Al_scaffold_0003_1714 2012 0.0
Ahg929374 jgi|Araly1|929374|scaffold_301831.1 1297 0.0
> Ahg904586 jgi|Araly1|904586|Al_scaffold_0003_1714
Length=1629
Score = 2012 bits (1089), Expect = 0.0
Identities = 1458/1633 (89%), Gaps = 37/1633 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCTCGTGAAAACGGAAACGCAGGCGTTAGGAAACCACCAGCATTCTTCAAGGTTT 60
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |||
Sbjct 1 ATGGCGCTCGTGAAATCGGAAACGCAGGCGCTAGAAAACCACCAGCATTCTTCAATGTTC 60
Query 61 GGTTCGCTTTACGTCGGTGATCTTAGCCCAGACGTGACGGAGAAAGATCTCATTGATAAG 120
| |||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||
Sbjct 61 GCTTCGCTTTACGTCGGTGATCTTAGTCCAGACGTGACGGAGCAAGATCTCATCCA-CAG 119
Query 121 -TTCTCTTTGAATGTTCCGGTAGTGTCCGTTCATCTTTGCCGTAACTCTGTCACCGGAAA 179
||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 120 ATTCTCCTTGACTGTTCCGGTACTCTCCGTTCATCTTTGCCGTAACTCTGTCACCGGAAA 179
Query 180 ATCCATGTGTTACGCTTACATCAACTTCGATTCACCTTTCAGCGCATCGAATGCTATGAC 239
|||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 180 ATCCTTGTGTTACGCTTACATCAACTTTGATTCACCTTTCAGCGCATCGAATGCGATGGC 239
Query 240 TCGCTTAAACCATAGTGATTTGAAGGGAAAGGCTATGCGAATAATGTGGTCTCAGAGGGA 299
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCGCTTAAACCACACTGATTTGAAGGGAAAGGCTATGCGAATAATGTGGTCTCAGAGGGA 299
Query 300 TCTTGCGTACCGTCGTCGTACTCGTACTGGTTTTGCAAATCTATACGTAAAGAATCTGGA 359
|||| ||||||||||||||||| | || |||| |||||||||||| |||||||| ||
Sbjct 300 TCTTTCGTACCGTCGTCGTACT-G----GG-TTTGGAAATCTATACGTCAAGAATCTAGA 353
Query 360 TAGCTCGATTACTAGCAGTTGCTTAGAGCGAATGTTTTGCCCCTTTGGT-TCCATACTTT 418
| |||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||
Sbjct 354 CATCTCGATTACTAGCAGTGGCTTAGAGCGAATGTTTAACCCCTTTGGTGT-CATACTTT 412
Query 419 CTTGCAAAGTCGTTGAAGAGAATGGCCAAAGTAAAGGTTTTGGCTTTGTTCAGTTTGATA 478
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 413 CTTGCAAAGTCGTTGAAGAGAATGGACAAAGCAAAGGTTTTGGCTTTGTTCAGTTTGAGA 472
Query 479 CAGAGCAATCTGCTGTATCTGCTCGTTCTGCTCTCCACGGCTCTATGGTTTATGGCAAGA 538
||||||||||||||||| ||||||| |||||||| || |||||||||||| |||||||||
Sbjct 473 CAGAGCAATCTGCTGTAACTGCTCGCTCTGCTCTTCATGGCTCTATGGTTGATGGCAAGA 532
Query 539 AACTGTTTGTTGCCAAGTTCATCAACAAGGATGAAAGAGCAGCTATGGCAGGAAATCAA- 597
|||||||||| |||||||| ||||||||| ||||||||| ||||||||||| ||| ||
Sbjct 533 AACTGTTTGTAGCCAAGTTTATCAACAAGAATGAAAGAGTTGCTATGGCAGGGAATAAAG 592
Query 598 GACTCTACAAACGTTTATGTGAAGAATCTGATCGAAACTGTTACAGATGA-TTGTCTACA 656
|| || ||||||||||||||||||||||| ||||||| | |||| || || | ||||||
Sbjct 593 GATTC-ACAAACGTTTATGTGAAGAATCTTATCGAAAATATTACTGAGGACAT-TCTACA 650
Query 657 TACACTGTTTTCTCAATATGGAACTGTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGG 716
|| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 651 TAGACTGTTTTCTCAGTATGGAACAGTCTCTAGTGTTGTGGTTATGAGGGATGGAATGGG 710
Query 717 AAGATCTAGAGGTTTCGGATTTGTTAACTTCTGCAATCCAGAAAATGCTAAGAAAGCTAT 776
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
Sbjct 711 AAGATCTAGAGGTTTCGGATTTGTCAACTTCTGCCATCCAGAAAATGCTAAGAAGGCTGT 770
Query 777 GGAATCTCTCTGTGGACTACAACTTGGATCGAAGAAATTGTTTGTTGGTAAGGCACTCAA 836
||| |||||| ||||| |||| |||| ||||||| ||||||||||| || ||||||||
Sbjct 771 GGACTCTCTCCATGGACGACAAGTTGGGTCGAAGACTTTGTTTGTTGGAAAAGCACTCAA 830
Query 837 GAAAGATGAAAGGAGGGAGATGCTGAAACAGAAATTCAGTGACAACTTTATTGCAAAGCC 896
|| ||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||| |
Sbjct 831 GAGAGATGAAAGGAGGGAGATGCTGAAACATAAATACAGGGACAACTTTATTGCCAAGTC 890
Query 897 TAACATGAGATGGTCCAATCTGTACGTGAAGAACTTGAGTGAATCAATGAATGAAACAAG 956
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 891 TAACATGAGGTGGTCCAATCTGTACGTGAAGAACCTGAGTGAATCAATGAATGATACAAC 950
Query 957 ACTGCGAGAAATCTTTGGATGCTATGGGCAAATAGTTTCAGCTAAAGTGATGTGTCATGA 1016
|||||||||||| |||||| | || ||||||||||| |||||||| |||||| |||||||
Sbjct 951 ACTGCGAGAAATATTTGGAAGGTACGGGCAAATAGTCTCAGCTAAGGTGATGCGTCATGA 1010
Query 1017 GAATGGCAGAAGTAAAGGATTCGGCTTTGTGTGCTTCTCTAACTGTGAAGAGTCCAAACA 1076
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 GAATGGCAGAAGTAAAGGATTCGGCTTTGTGTGCTTCTCTAACCGTGAAGAGTCCAAACA 1070
Query 1077 GGCTAAAAGATATCTCAATGGGTTCTT-AGTTGATGGAAAGCCAATAGTTGTTCGAGTTG 1135
|||||||||||||||||||||||| || ||||||||| ||| | |||||||||||||||
Sbjct 1071 GGCTAAAAGATATCTCAATGGGTT-TTCAGTTGATGGTAAGTTATTAGTTGTTCGAGTTG 1129
Query 1136 CAGAGCGCAAAGAGGATCGAATCAAGAGGTTGCAGCAATATTTTCAGGCACAGCCACGCC 1195
| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 1130 CCGAGCGCAAAGAGGATCGACTCAAGAGGTTGCAGCAATATTTTCATGCACAACCACGCC 1189
Query 1196 AGTACACGCAAGCTCCTTCT-GCCCCTTCACCAGCTCAGCCAGTCCTCTCATATGTGTCC 1254
| ||||||||||||||| || | ||||||||| ||||| |||||||||||||||||| ||
Sbjct 1190 ATTACACGCAAGCTCCT-CTTGTCCCTTCACCTGCTCAACCAGTCCTCTCATATGTG-CC 1247
Query 1255 -AGCTCATATGGTTGCTTTCAGCCATTCCAGGTCGGGACATCTTATTACTATATGGGCAA 1313
||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 1248 TAGCTCATATGGTTACTTGCAGCCATTCCATGTCGGGGCATCTTATTACTATATGGGCAC 1307
Query 1314 TCAGGTGCCACAAATGTCCGGTCACCAAAACATCACCACCTACGTTCCAGCTGGGAAAG- 1372
|||| | ||||||||||| || |||||||||||||||| | | ||||||||||||||||
Sbjct 1308 TCAGTTACCACAAATGTCTGGCCACCAAAACATCACCAACGATGTTCCAGCTGGGAAAGG 1367
Query 1373 TGCCTCTCAAGGAGAGAAGATCAATGCATCTGGTCTACAAACATCCGGCTTATCCCGTTG 1432
| ||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 1368 T-CCTCTCAAGGAGAAAAGATCATTGCACCTGGTCTACAAACACCCGGCTTATCCCGTTG 1426
Query 1433 CCAAGAGGGGTGCTAAACAGACA-CTGGTTTTTAAGGGTGAGGTTAACAGAAATTTAGAG 1491
||||||| | |||||||| | | ||||| ||||||||||||| |||| ||| |||||||
Sbjct 1427 CCAAGAGTGAAGCTAAACAAA-AGCTGGTCTTTAAGGGTGAGGGTAACCGAACTTTAGAG 1485
Query 1492 GCTGCAACATGCTCCAAAGCAACAACATCTGAGGAGAACCGTAAAGAAGAA-CGAAGATT 1550
|||||||||||||| ||||||||||||||||| ||| || ||| |||||| | ||| |
Sbjct 1486 GCTGCAACATGCTCAAAAGCAACAACATCTGATGAGGTCCTTAATGAAGAAGC-AAGCTC 1544
Query 1551 GACTTTG-TCAG-GAAA--GT--T-GTCACCAGAAG-TGAAGGTAGAGGAATCAGGAAAA 1602
|||||| | || || || | ||||||| ||| | |||| |||| |||||||||||
Sbjct 1545 AACTTTGAT-AGCGATGTTGTCGTTGTCACCAAAAGAT-AAGGCAGAGAAATCAGGAAAA 1602
Query 1603 CAA-TTGCAATGA 1614
||| |||||||||
Sbjct 1603 CAAATTGCAATGA 1615
> Ahg929374 jgi|Araly1|929374|scaffold_301831.1
Length=1264
Score = 1297 bits (702), Expect = 0.0
Identities = 1009/1150 (88%), Gaps = 49/1150 (4%)
Strand=Plus/Plus
Query 488 CTGCTGTATCTGCTCGTTCTGCTCTCCACGGCTCTATGGTTTATGGCAAGAAACTGTTTG 547
||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 101 CTGGTGTATCTGCTCGGTCTGCTCTCCATGGCTCTATGGTTGATGGCAAGAAACTGTTTG 160
Query 548 TTGCCAAGTTCATCAACAAGGATGAAAGAGCAGCTATGGCA-GGAAATCAAG-ACTCTAC 605
| |||||||||||||||||||||||||||||||||||| || || ||||||| | || ||
Sbjct 161 TAGCCAAGTTCATCAACAAGGATGAAAGAGCAGCTATGTCATGG-AATCAAGAATTC-AC 218
Query 606 AAACGTTTATGTGAAGAATCTGATCGAAACTGTTACAGATGAT-TGTCTACATACACTGT 664
||||||||||||| ||||||||||||||| ||||||||| ||| | |||||||| | |||
Sbjct 219 AAACGTTTATGTGGAGAATCTGATCGAAAATGTTACAGAGGATAT-TCTACATAGATTGT 277
Query 665 TTTCTCAATATGGAACT-GTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGGAAGATCT 723
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TCTCTCAATATGGAA-TAGTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGGAAGATCT 336
Query 724 AGAGGTTTCGGATTTGTTAACTTCTGCAATCCAGAAAATGCTAAGAAAGCTATGGAATCT 783
|||||||| |||||||| ||||||||| ||| ||||||||||||||||||| |||||| |
Sbjct 337 AGAGGTTTAGGATTTGTCAACTTCTGCCATCTAGAAAATGCTAAGAAAGCTGTGGAATTT 396
Query 784 CTCTGTGGACTACAACTTGGATCGAAGAAATTGTTTGTTGGTAAGGCACTCAAGAAAGAT 843
||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 397 CTCTGCGGACGACAACTTGGATCGAAGACTTTGTTTGTTGGTAAGGCACTCAGGAAAGAT 456
Query 844 GAAAGGAGGGAGATGCTGAAACAGAAATT-CAGTGACAACTTTATTGCAAAGCCTAACAT 902
||||||| ||||||||||||||| | ||| ||| ||||||| |||||| |||||||||||
Sbjct 457 GAAAGGATGGAGATGCTGAAACA-ACATTTCAGGGACAACTCTATTGCCAAGCCTAACAT 515
Query 903 GAGATGGTCCAATCTGTACGTGAAGAACTTGAGTGAATCAATGAATGAAACAAGACTGCG 962
| | ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 516 GGGGTGGTCCAATATGTACGTGAAGAACCTGAGTGAATCAATGAATGATACAAGACTGCG 575
Query 963 AGAAATCTTTGGATGCTATGGGCAAATAGTTTCAGCTAAAGTGATGTGTCATGAGAATGG 1022
|||||| |||||| | |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 576 AGAAATATTTGGAAGGTATGGGCAAATAGTCTCAGCTAAAGTGATGCGTCATGAGAATGG 635
Query 1023 CAGAAGTAAAGGATTCGGCTTTGTGTGCTTCTCTAACTGTGAAGAGTCCAAACAGGCTAA 1082
|||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 636 CAGAAGTAAAGGGTTCGGCTTTGTGTGCTTCTCGAACCGTGAAGAATCCAAACAGGCTAA 695
Query 1083 AAGATATCTCAATGGGTTCTTAGTTGATGGAAAGCCAATAGTTGTTCGAGTTGCAGAGCG 1142
|||||||||||||| || | ||||||||||| |||||||||||||| | |||||
Sbjct 696 AAGATATCTCAATG--TT----G---ATGGAAAGCCATTAGTTGTTCGAGTTACCGAGCG 746
Query 1143 CAAAGAGGAT-CGAATCAAGAGGTTGCAGCAATATTTTCA-GGCACAGCCACGCCAGTAC 1200
|||||||||| | | |||||||| |||| ||||| ||||| || ||| |||||||| |||
Sbjct 747 CAAAGAGGATAC-ACTCAAGAGGCTGCACCAATACTTTCATGG-ACAACCACGCCATTAC 804
Query 1201 ACGCAAGCTCCTTCT-GCCCCTTCACCAGCTCAGCCAGTCCTCTCATATGTGTCCAGCTC 1259
||||||||||| || | |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 805 ACGCAAGCTCCA-CTTGTCCCTTCACCAACTCAGCCAGTCCTCTCATATGTGCCCAGCTC 863
Query 1260 ATATGGTTGCTTTCAGCCATTCCAGGTCGGGACATCTTATTACTATATGGGCAATCAGGT 1319
|||||||| ||| ||||||||||| ||||||||||| |||||||||||||||| |||| |
Sbjct 864 ATATGGTTACTTGCAGCCATTCCATGTCGGGACATCGTATTACTATATGGGCACTCAGTT 923
Query 1320 GCCACAAATGTCCGGTCACCAAAACATCACCACCTACGTTCCAGCTGGGAAAG-TGCCTC 1378
||||||||||| || |||||||||||||||||||| ||| |||| ||||||| | ||||
Sbjct 924 ACCACAAATGTCTGGCCACCAAAACATCACCACCTATGTTGCAGCAGGGAAAGCT-CCTC 982
Query 1379 TCAAGGAGAGA-AGATCAATGCATCTGGTCTACAAACATCCGGCTTATCCCGTTGCCAAG 1437
||||||||| | |||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 983 TCAAGGAGA-ACAGATCATTGCACCTGGTCTACAAACACCCGGCTTATCCCGTTGCCAAG 1041
Query 1438 AGGGGTGCTAAACAGACACTGGTTTTTAAGGGTGAGGT-TAACAGAAATTTAGAGGCTGC 1496
|| |||| |||||||| |||||| |||||||||| |||| ||| || |||||||||
Sbjct 1042 AGTGGTG-TAAACAGAAACTGGTCATTAAGGGTGAAAAATAACCGAACTTCAGAGGCTGC 1100
Query 1497 AACATGCTCCAAAGCAACAACATCTGAG-GAGAACCGTAAAGAA-GAA-CGAAGATTGAC 1553
||||||||| |||||||||||||||| | ||| || ||| ||| ||| | ||||| |||
Sbjct 1101 AACATGCTCAAAAGCAACAACATCTG-GTGAGGTCCTTAA-GAAAGAATC-AAGATCGAC 1157
Query 1554 TTTG-TCAGGAAAGT--T-GT---CACCAGAAGTGAAGGTAGAGGAATCA---GGAAAAC 1603
|||| | ||||| || | || ||||| ||||||| | |||| ||||| ||||||
Sbjct 1158 TTTGAT-AGGAATGTCGTCGTTGTCACCAAAAGTGAAAGCAGAGAAATCATCAGGAAAAG 1216
Query 1604 AA-TTGCAAT 1612
|| |||||||
Sbjct 1217 AAATTGCAAT 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5