BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16390.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929465 jgi|Araly1|929465|scaffold_301922.1 2141 0.0
Ahg479094 jgi|Araly1|479094|fgenesh2_kg.3__1795__AT3G16410.1 1293 0.0
Ahg930637 jgi|Araly1|930637|scaffold_303094.1 294 1e-78
> Ahg929465 jgi|Araly1|929465|scaffold_301922.1
Length=1450
Score = 2141 bits (1159), Expect = 0.0
Identities = 1358/1454 (93%), Gaps = 14/1454 (1%)
Strand=Plus/Plus
Query 12 ATCAAACGCAAGCAAAAGAGATGGCCCAAAAGCTAGTTGCACAGGGTGGTGAGACGGGAG 71
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 1 ATCAAACGCAAGCAAAAGAGATGGCCAAAAAGCTAGAAGCAAAGGGTGGTGAGACGGGAG 60
Query 72 ATGTATGGGATGATGGTGTTTACGACAATGTTACAAAGGTATATGTAGGGCAAGGCCAGT 131
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 61 ATGTATGGGATGATGGTGTTTACGAAAATGTTAGAAAGGTATATGTAGGGCAAGGCCAAT 120
Query 132 ATGGTATAGCCTTCGTCAAGTTTGAGTATGCCAATGGTTCTGAAGTGGTTGTTGGAGATG 191
|||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||
Sbjct 121 ATGGTATAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTAGTTGTTGGAGATG 180
Query 192 AACATGGAGA-GAAGACTGAGCTAGGAGTTGAAGAGTTTGAGATTGATTCGGATGACTAC 250
|||||||| | |||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 181 AACATGGA-ACGAAGACAAAGCTAGGAGTTGATGAGTTTGAGATTGATGCGGATGACTAC 239
Query 251 ATCGTCTACGTGGAAGGTTACCGTGAGAAAGTTAGCGATATGACCTCAGAAATGATCACG 310
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 ATCGTATACGTGGAAGGTTACCGTGAGAAAGTTAACGATATGACCTCAGAAATGATCACG 299
Query 311 TTTCTTTCATTCAAGACTTCTAAAGGCAAAACCTCTCAGCCTATCGTTAAA-AA-ACCTG 368
||||||||||||||||||| || ||||||||||||||| ||||||| ||| || |||||
Sbjct 300 TTTCTTTCATTCAAGACTTTTACAGGCAAAACCTCTCATCCTATCG--AAAGAAGACCTG 357
Query 369 GGGTTAAGTTTGTGCTACATGGTGGAAAAATCGTTGGGTTTCATGGACGTTCGACCGACG 428
||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||
Sbjct 358 GGGTTAAGTTTGTGCTACAAGGTGGAAAAGTCGTTGGGTTTCACGGACGTTCCACCGACG 417
Query 429 TTCTACATTCCCTAGGGGCCTATGTTTCTTTGCCGTCCACTCCCAAATTGCTTGGAAACT 488
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 418 TTCTACACTCCCTCGGGGCCTACGTTTCTTTGCCGTCCACTCCCAAATTGCTTGGAAAGT 477
Query 489 GGATTAAGGTGGAGCAAAATGGAGAAGGCCCAGGGCTAAGATGCTCACATGGCATAGCTC 548
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 478 GGATTAAGGTGGAGCAAAAAGGAGAAGGTCCAGGGCTAAGATGCTCACATGGCATAGCAC 537
Query 549 AAGTAGGCAACAAGATTTACTCTTTTGGTGGTGAGCTCATACCAAATCAGCCCATCGATA 608
|| |||| |||||||||||||| |||||||||||| ||| |||||||||||||||||| |
Sbjct 538 AAATAGGTAACAAGATTTACTCCTTTGGTGGTGAGTTCACACCAAATCAGCCCATCGACA 597
Query 609 AACACCTTTACGTCTTTGACCTCGAGACCCGGACTTGGTCCATTGCTCCAGCCACCGGAG 668
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 AACACCTTTACGTCTTTGACCTCGAGACCCGGACTTGGTCCATTTCTCCAGCCACCGGAG 657
Query 669 ACGTTCCACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAGTAGGATCGACCCTCTATA 728
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 658 ACGTTCCACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAATAGGGTCGACCCTCTATG 717
Query 729 CCTTTGGAGGCCGAGACTTTTCACGCCAATACAACGGTTTCTACTCGTTTGACACGACAA 788
|||||||||||||||| ||||||||| ||||| ||||||||||| |||||||| || |
Sbjct 718 TCTTTGGAGGCCGAGACGCTTCACGCCAGTACAATGGTTTCTACTCATTTGACACAACCA 777
Query 789 CAAACGAGTGGAAACTGCTAACTCCGGTGGAAGAAGGACCCACTCCTCGTAGTTTCCATT 848
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 778 CAAACGAGTGGAAACTGCTAACTCCGGTAGAAGAAGGACCAACTCCTCGTAGTTTCCACT 837
Query 849 CGATGGCAGCGGATGAGGAAAACGTTTACGTTTTCGGTGGAGTGGGTGCTATGGATCGAA 908
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 838 CGATGGCAGCCGATGAGGAAAACGTTTACGTTTTCGGTGGAGTGGGTGCTAGGGAACGAA 897
Query 909 TCAAGACACTAGACTCTTACAATATCGTTGACAAGACGTGGTTTCATTGTTCGAATCCAG 968
|||||||||||||||||||||| |||||||| |||| ||||||||| || |||| |||||
Sbjct 898 TCAAGACACTAGACTCTTACAACATCGTTGATAAGAAGTGGTTTCAGTGCTCGACTCCAG 957
Query 969 GAGATTCCTTTAGCATAAGAGGAGGAGCAGGGCTCGAAGTGGTGCAAGGGAAAGTATGGA 1028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAGATTCCTTTAGCATAAGAGGAGGAGCAGGGCTCGAAGTGGTGCAAGGGAAAGTATGGG 1017
Query 1029 TTGTGTATGGATTTAACGGATGTGAAGTAGATGATGTTCATTTCTACGATCCTGCTGAAG 1088
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 TTGTGTATGGATTTAACGGATGTGAAATAGATGATGTTCATTTCTACGATCCTGCTGAAG 1077
Query 1089 ACAAATGGACACAAGTGGAAACATTCGGTGTGAAG-CCTAACGAAAGGAGTGTTTTCGCT 1147
||| ||||||| |||||||||||| |||||| || ||| |||||||||||| ||||||
Sbjct 1078 ACAGTTGGACACGAGTGGAAACATTTGGTGTG-AGACCTTCCGAAAGGAGTGTATTCGCT 1136
Query 1148 AGTGCGGCTATTGGGAAACACATTGTGATATTTGGAGGTGAGATTGCGATGGATCCACGA 1207
||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||| |
Sbjct 1137 AGTGCGGCTGTTGGGAAACACATTGTGATGTTCGGAGGTGAGATTGCGATGGACCCACTA 1196
Query 1208 GCTCACGTAGGTCCGGGTCAATTAATCGATGGGACTTTCGCGTTGGATACAGAGACGTTG 1267
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1197 GCTCACGTAGGTCCGGGTCAATTGATCGATGGGACTTTCACGTTGGATACAGAGACGTTG 1256
Query 1268 CAATGGGAGAGGTTAGATAAG-TT--TG-AG-GG-GACTCCGAGTAGCAGAGGATGGACC 1321
||||||||||||||||||||| || || || || ||| |||||||||||||||||||||
Sbjct 1257 CAATGGGAGAGGTTAGATAAGTTTAGTGAAGAGGAGACACCGAGTAGCAGAGGATGGACC 1316
Query 1322 GCGTCCACGACTGGAACCATTGATGGTAAGAAAGGACTTGTGATGCATGGTGGTAAAGCT 1381
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCGTCCACAACTGGGACCATTGATGGTAAGAAAGGACTTGTGATGCATGGTGGTAAAGCT 1376
Query 1382 CCAACCAATGACCGGTTTGATGACCTCTTCTTTTACGGAATTGACTCTGTCTGATTAAGC 1441
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 1377 CCAACCAATGACCGGTTTGATGACCTCTTCTTTTACGGAATCGACTCTGCCTAATTAAGC 1436
Query 1442 GCGATTTGATCATG 1455
||||||||||||||
Sbjct 1437 GCGATTTGATCATG 1450
> Ahg479094 jgi|Araly1|479094|fgenesh2_kg.3__1795__AT3G16410.1
Length=1634
Score = 1293 bits (700), Expect = 0.0
Identities = 870/951 (91%), Gaps = 15/951 (2%)
Strand=Plus/Plus
Query 497 GTGGAGCAAAATGGAGAAGGCCCAGGGCTAAGATGCTCACATGGCATAGCTCAAGTAGGC 556
||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 516 GTGGAGCAAAAAGGAGAAGGTCCAGGGCTAAGATGCTCACATGGCATAGCACAGGTAGGT 575
Query 557 AACAAGATTTACTCTTTTGGTGGTGAGCTCATACCAAATCAGCCCATCGATAAACACCTT 616
|||||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 576 AACAAGATTTACTCCTTTGGTGGTGAGTTCACACCAAATCAGCCCATCGACAAACACCTT 635
Query 617 TACGTCTTTGACCTCGAGACCCGGACTTGGTCCAT-TGCTCCAGCCACCGGAGACGTTCC 675
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 636 TACGTCTTTGACCTCGAGACCCGGACTTGGTCCATCT-CTCCAGCCACCGGAGACGTTCC 694
Query 676 ACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAGTAGGATCGACCCTCTATACCTTTGG 735
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 695 ACACCTCTCTTGCTTAGGTGTCCGTATGGTGTCAGTAGGATCGACCCTCTACGTCTTTGG 754
Query 736 AGGCCGAGACTTTTCACGCCAATACAACGGTTTCTACTCGTTTGACACGACAACAAACGA 795
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 755 AGGCCGAGACGCTTCACGCCAATACAACGGTTTCTACTCATTTGACACGACCACACACGA 814
Query 796 GTGGAAACTGCTAACTCCGGTGGAAGAAGGACCCACTCCTCGTAGTTTCCATTCGATGGC 855
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 815 GTGGAAACTGCTAACTCCGGTCGAAGAAGGACCCACTCCTCGTAGTTTCCACTCGATGGC 874
Query 856 AGCGGATGAGGAAAACGTTTACGTTTTCGGTGGAGTGGGTGCTATGG-ATCGAATCAAGA 914
||| ||||||||||||||||||||||||||||||||| |||||| || | | ||||||
Sbjct 875 AGCCGATGAGGAAAACGTTTACGTTTTCGGTGGAGTGAGTGCTACGGCAAGGC-TCAAGA 933
Query 915 CACTAGACTCTTACAATATCGTTGACAAGACGTGGTTTCATTGTTCGAATCCAGGAGATT 974
|||||||||||||||| |||||||| |||| ||||||||| || |||| ||| ||| |
Sbjct 934 CACTAGACTCTTACAACATCGTTGATAAGAAGTGGTTTCAGTGCTCGACTCCCTTAGAGT 993
Query 975 CCTTTAGCATAAGAGGAGGAGCAGGGCTCGAAGTGGTGCAAGGGAAAGTATGGATTGTGT 1034
|| ||| | |||||||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 994 CCCTTACCGCAAGAGGAGGAGCAGGGCTCGAAGTGGTGAAAGGGAAGGTATGGGTTGTGT 1053
Query 1035 ATGGATTTAACGGATGTGAAGTAGATGATGTTCATTTCTACGATCCTGCTGAAGACAAAT 1094
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
Sbjct 1054 ATGGATTTAACGGATGTGAAGTAGATGATGTTTATTACTACGATCCTGTTGAAGACAAGT 1113
Query 1095 GGACACAAGTGGAAACATTCGGTGTGA-AGCCTAACGAAAGGAGTGTTTTCGCTAGTGCG 1153
||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 1114 GGACACAAGTGGAAACATTCGGTGTGAGA-CCTTCCGAAAGGAGTGTATTCGCTAGTGCG 1172
Query 1154 GCTATTGGGAAACACATTGTGATATTTGGAGGTGAGATTGCGATGGATCCACGAGCTCAC 1213
||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1173 GCTGTTGGGAAACACATTGTGATGTTTGGAGGTGAGATTGCGATGGACCCACTAGCTCAC 1232
Query 1214 GTAGGTCCGGGTCAATTAATCGATGGGACTTTCGCGTTGGATACAGAGACGTTGCAATGG 1273
| |||||||||||||| | |||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1233 GCGGGTCCGGGTCAATTGACCGATGGGACTTTTGCGTTAGATACGGAGACGTTGCAATGG 1292
Query 1274 GAGAGGTTAGATAAGTTT-G--A-G-GG-G-A--CTCCGAGTAGCAGAGGATGGACCGCG 1324
|||||| | ||||||||| | | | || | | ||||||||||||||||||||||||||
Sbjct 1293 GAGAGGCTGGATAAGTTTAGTGAAGAGGAGGAGACTCCGAGTAGCAGAGGATGGACCGCG 1352
Query 1325 TCCACGACTGGAACCATTGATGGTAAGAAAGGACTTGTGATGCATGGTGGTAAAGCTCCA 1384
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TCCACGACTGGGACCATTGATGGTAAGAAAGGACTTGTGATGCATGGTGGTAAAGCTCCA 1412
Query 1385 ACCAATGACCGGTTTGATGACCTCTTCTTTTACGGAATTGACTCTGTCTGA 1435
|||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1413 ACCAATGACCGGTTTGATGATCTCTTCTTTTACGGAATCCACTCTGTCTGA 1463
Score = 664 bits (359), Expect = 0.0
Identities = 438/475 (92%), Gaps = 10/475 (2%)
Strand=Plus/Plus
Query 15 AAACGCAAGCAAAAGAGATGGCCCAAAAGCTAGTTGCACAGGGTGGTGAGACGGGAGATG 74
|||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||||
Sbjct 4 AAACGCAAGCAAAAGAGATGGCTCAAAAGCTAGAAGCAAAGGGTGGTGAGACAGGAGATG 63
Query 75 TATGGGATGATGGTGTTTACGACAATGTTACAAAGGTATATGTAGGGCAAGGCCAGTATG 134
||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 64 TATGGGATGATGGTGCTTACGAAAATGTTAGAAAGGTATATGTAGGGCAAGGCCAATATG 123
Query 135 GTATAGCCTTCGTCAAGTTTGAGTATGCCAATGGTTCTGAAGTGGTTGTTGGAGATGAAC 194
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 124 GTATAGCCTTCGTCAAGTTTGAGTATGTCAATGGTTCTCAAGTGGTTGTTGGAGATGAAC 183
Query 195 ATGGAGAGAAGACTGAGCTAGGAGTTGAAGAGTTTGAGATTGATTCGGATGACTACATCG 254
||||| | ||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 184 ATGGAAAAAAGACAGAGCTAGGAGTTGAGGAGTTTGAGATTGATGCGGATGACTACATCG 243
Query 255 TCTACGTGGAAGGTTACCGTGAGAAAGTTAGCGATATGACCTCAGAAATGATCACGTTTC 314
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 244 TATACGTGGAAGGTTACCGTGAGAAAGTTAACGATATGACCTCAGAAATGATCACGTTTC 303
Query 315 TTTC-ATTCAAGACTTCTAAAGGCAAAACCTCTCAGCCTATCGTTAAA-AA-ACCTGGGG 371
|||| || |||||||| |||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 304 TTTCTAT-CAAGACTTTTAAAGGCAAAACCTCTCATCCTATCG--AAAGAAGACCTGGGG 360
Query 372 TTAAGTTTGTGCTACATGGTGGAAAAATCGTTGGGTTTCATGGACGTTCGACCGACGTTC 431
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||| | |
Sbjct 361 TTAAGTTTGTGCTACACGGTGGAAAAATCGTTGGGTTTCACGGACGTTCCACCG---T-C 416
Query 432 TACATTCCCTAGGGGCCTATGTTTCTTTGCCGTCCACTCCCAAATTGCTTGGAAA 486
|||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 417 TACACTCCCTCGGGGCCTACGTTTCTTTGCCGTCCACTCCCAAATTACTTGGAAA 471
> Ahg930637 jgi|Araly1|930637|scaffold_303094.1
Length=257
Score = 294 bits (159), Expect = 1e-78
Identities = 227/260 (87%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 680 CTCTCTTGCTTAGGTGTCCGTATGGTGTCAGTAGGATCGACCCTCTATACCTTTGGAGGC 739
|||||||| |||||||||||||||||| || |||||||||||| ||| ||||||||||
Sbjct 1 CTCTCTTGATTAGGTGTCCGTATGGTGGCAACAGGATCGACCCTTTATGTCTTTGGAGGC 60
Query 740 CGAGACTTTTCACGCCAATACAACGGTTTCTACTCGTTTGACACGACAACAAACGAGTGG 799
|||||| |||| |||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 61 CGAGACGCTTCATGCCAATACAACGGTTTCTACTC---AGACACGACCCCAAACGAGAGG 117
Query 800 AAACTGCTAACTCCGGTGGAAGAAGGACCCACTCCTCGTAGTTTCCATTCGATGGCAGCG 859
||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 118 AAACTCCTATCTCCGGTCGAAGAAGGACCCACTCCTCGTAGTTTCCACTCGATGACAGCC 177
Query 860 GATGAGGAAAACGTTTACGTTTTCGGTGGAGTGGGTGCTATGGATCGAATCAAGACACTA 919
||||||||||||||||||||||||||||||||| || || || || | |||||||||
Sbjct 178 GATGAGGAAAACGTTTACGTTTTCGGTGGAGTGAGTTTTACGGCCCGGTT-AAGACACTA 236
Query 920 GACTCTTACAATATCGTTGA 939
||||||||||| ||||||||
Sbjct 237 GACTCTTACAACATCGTTGA 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5