BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16415.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929466 jgi|Araly1|929466|scaffold_301923.1 303 2e-81
> Ahg929466 jgi|Araly1|929466|scaffold_301923.1
Length=944
Score = 303 bits (164), Expect = 2e-81
Identities = 233/266 (88%), Gaps = 5/266 (2%)
Strand=Plus/Plus
Query 1422 GGAGGGAAGTTACGATAAAT-TATTTGGAGTGGAAGGCGAGTTGGTGACGATGCTTAGGT 1480
||||||| |||||||| ||| | |||||| | |||| ||||||||||||||||||||| |
Sbjct 669 GGAGGGATGTTACGAT-AATGTCTTTGGAATTGAAGCCGAGTTGGTGACGATGCTTAGAT 727
Query 1481 TCAAGACAAACAAGCGTACCTCTCCACCGTTTGGGCTCGATGCAGGCACAACGTTTGCGT 1540
| | |||||| || ||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 728 TTATGACAAATAAACGTACATCTCCACCGTTTGGGCTCGATGCAGGCACACCGTTTACGT 787
Query 1541 TGGAGATGAAAGATCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 1600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGGAGATGAAAGACCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 847
Query 1601 AAGTTGGTATCCACGTCAC-CCAAATCACCAAGTCTTAAAGCTTTGTGAGCTTTCTCTTC 1659
|||||||| || ||||| | |||| || | |||||||||| ||||| ||||| |||||
Sbjct 848 AAGTTGGTGTCTACGTCTCGCCAA-TCTC-AAGTCTTAAACCTTTGAGAGCTCTCTCTAG 905
Query 1660 TATTCCTAGAATAAAATTAAAAAGCC 1685
|| ||| |||||||| ||||||||
Sbjct 906 GCTTACTAAAATAAAATGAAAAAGCC 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5