BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16415.1 Length=1695 Score E Sequences producing significant alignments: (Bits) Value Ahg929466 jgi|Araly1|929466|scaffold_301923.1 303 2e-81 > Ahg929466 jgi|Araly1|929466|scaffold_301923.1 Length=944 Score = 303 bits (164), Expect = 2e-81 Identities = 233/266 (88%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 1422 GGAGGGAAGTTACGATAAAT-TATTTGGAGTGGAAGGCGAGTTGGTGACGATGCTTAGGT 1480 ||||||| |||||||| ||| | |||||| | |||| ||||||||||||||||||||| | Sbjct 669 GGAGGGATGTTACGAT-AATGTCTTTGGAATTGAAGCCGAGTTGGTGACGATGCTTAGAT 727 Query 1481 TCAAGACAAACAAGCGTACCTCTCCACCGTTTGGGCTCGATGCAGGCACAACGTTTGCGT 1540 | | |||||| || ||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 728 TTATGACAAATAAACGTACATCTCCACCGTTTGGGCTCGATGCAGGCACACCGTTTACGT 787 Query 1541 TGGAGATGAAAGATCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 1600 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 788 TGGAGATGAAAGACCATAAGATCGTTGGATTCCATGGCAAAGCTGGAGATTTTGTTCATC 847 Query 1601 AAGTTGGTATCCACGTCAC-CCAAATCACCAAGTCTTAAAGCTTTGTGAGCTTTCTCTTC 1659 |||||||| || ||||| | |||| || | |||||||||| ||||| ||||| ||||| Sbjct 848 AAGTTGGTGTCTACGTCTCGCCAA-TCTC-AAGTCTTAAACCTTTGAGAGCTCTCTCTAG 905 Query 1660 TATTCCTAGAATAAAATTAAAAAGCC 1685 || ||| |||||||| |||||||| Sbjct 906 GCTTACTAAAATAAAATGAAAAAGCC 931 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63572618905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5