BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16440.1 Length=1179 Score E Sequences producing significant alignments: (Bits) Value Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1 1419 0.0 Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3 913 0.0 Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1 424 1e-117 Ahg929469 jgi|Araly1|929469|scaffold_301926.1 56.5 4e-07 > Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1 Length=1050 Score = 1419 bits (768), Expect = 0.0 Identities = 878/933 (94%), Gaps = 0/933 (0%) Strand=Plus/Plus Query 50 ATCAAAAGCAAGCAAAAGATGGCTCAAAAGGTGGAAGCACAAGGAGGTATTGGAGGAGAT 109 |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct 10 ATCAAAAGCAAGCAAAAGATGGTTCAAAAGGTGGAAGCACAAGGAGGTATGGGAGGAAAT 69 Query 110 GTATGGGATGATGGTGCTCACGACGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCTTGAT 169 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| Sbjct 70 GTATGGGATGATGGTGTTCACGACGGTGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGAT 129 Query 170 GGTGTTTCGTTTATCAATGTCGTGTACGAGAATGGTTCACAGGAAGTTGTAGGAGGTGAA 229 ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 130 GGTGTGTCGTTTATTAATGTCGTGTACGAGAATGGTTCAGAGGAAGTTGTAGGAGGTGAA 189 Query 230 CATGGAAAGAAGTCACTAATTGGAATCGAAACGTTTGAGGTTGATGCAGACGACTACATC 289 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 190 CATGGAAAGAAGTCACTTATTGGAATCGAAACATTTGAGGTTGATGCAGACGACTACATC 249 Query 290 GTAGCAGTGCAGGTGACCTATGACAAAATATTTGGCTATGACTCCGACATCATCACATCC 349 |||||||||||||||||||| |||||||||||||||| |||||| || |||| ||||| Sbjct 250 GTAGCAGTGCAGGTGACCTACGACAAAATATTTGGCTTTGACTCTGAGGTCATTACATCT 309 Query 350 ATAACCTTCTCTACATTCAAGGGAAAAACCTCGCCACCCTACGGATTAGATACCGAAAAT 409 || ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| Sbjct 310 ATCACCTTCTCTACATTCAAGGGAAAAACCTCTCCACCCTTTGGCTTAGATACCGAAAAT 369 Query 410 AAGTTTGTACTCAAGGAAAAGAACGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGC 469 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 370 AAGTTTGTACTCAAGGAAAAAAATGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGC 429 Query 470 GAAATTCTATATGCTCTTGGAGCGTATTTTACTACAACCACAACTCCTTTGACTCCTGCC 529 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 430 GAAATTCTATATGCTCTTGGAGCATATTTTACTACAACCACAACTCCTTTGAATCCTGCC 489 Query 530 AAGAAACTACCGGCTGTTGGTGGTGACGAAGGAACTGCCTGGGATGATGGTGCTTTCGAT 589 ||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 490 AAGAAACTACCAGCAGTTGGTGGTGACGAAGGAACTGCATGGGATGATGGTGCTTACGAT 549 Query 590 GGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCGGCCGTGAAGTTTGTG 649 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 550 GGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCAGCAGTAAAGTTTGTG 609 Query 650 TACGATAAGGGCGCCGAGGATATTGTAGGAGATGAACATGGAAATGATACTCTACTCGGA 709 ||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||| Sbjct 610 TACGACAAGGGCGCTGCGGATATTGTAGGAGATGAGCATGGAAATGATACTCTACTCGGA 669 Query 710 TTTGAAGAGTTCCAACTTGACTATCCAAGTGAATATATTACTGCAGTTGAAGGCACATAT 769 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 670 TTTGAAGAGTTCCAACTTGACTATCCAAGTGAATACATTACAGCAGTTGAAGGCACATAT 729 Query 770 GACAAAATATTTGGTTTTGAGACTGAAGTCATAAATATGCTTAGGTTCAAAACTAATAAG 829 || ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 730 GATAAAATCTTTGGTAGTGAGACTGAAGTCATAAATATGCTTAGGTTCAAGACTAATAAG 789 Query 830 AAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAAGAAGGT 889 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 790 CAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAGGAAGGT 849 Query 890 TGCAAGATCGTCGGGTTTCATGGAAAAGTAAGTGCGGTGCTTCATCAGTTTGGAGTCCAT 949 | ||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||| Sbjct 850 TCCAAGATCGTCGGGTTCCATGGAAAAGTCAGTTCGCTGCTTCATCAGTTTGGAGTCCAT 909 Query 950 ATCCTTCCTGTCACCAACTGATCATCACatata 982 ||||||| |||||||||||||||||||||||| Sbjct 910 GTCCTTCCAGTCACCAACTGATCATCACATATA 942 > Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3 Length=1103 Score = 913 bits (494), Expect = 0.0 Identities = 777/914 (85%), Gaps = 18/914 (2%) Strand=Plus/Plus Query 66 AGATGGCTCAAAAGGTGGAAGCA-CAAGGAGGTATTGGAGGAGATGT-ATGGGATGATGG 123 ||||||||||||| ||||||||| | ||| |||| ||||||| | | |||||||||||| Sbjct 27 AGATGGCTCAAAAAGTGGAAGCAGC-AGGTGGTACCGGAGGAGCT-TCATGGGATGATGG 84 Query 124 TGCT-CACGACGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCTTGATGGTGTTTCGTTTA 182 || | ||||| ||||||||||||||||||||||||||||||| |||||||| |||| || Sbjct 85 TG-TGCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCGTCTA 143 Query 183 TCAATGTCGTGTACGAGAATGG-TTCACAGGAAGTTGTAGGAGGTGAACATGGAAAGAAG 241 |||| |||||||| | ||| || ||| ||||| |||| |||||||||| ||||||||||| Sbjct 144 TCAAAGTCGTGTATGCGAA-GGATTCTCAGGATGTTGAAGGAGGTGAATATGGAAAGAAG 202 Query 242 TCACTAATTGGAATCGAAACGTTTGAGGTTGATGCAGACGACTACATCGTAGCAGTGCAG 301 | || ||||| |||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 203 ACGTTACTTGGATTCGAAACGTTTGAGGTTGATGCAGACGACTACATTGTAGCAGTGAAA 262 Query 302 GTGACCTATGACAAAATATTTGGCTATGACTCCGACATCATCACATCCATAACCTTCTCT 361 |||||||| ||||| |||||||| | ||||| ||||| |||||||| ||||||||| || Sbjct 263 GTGACCTACGACAACGTATTTGGCCAAGACTCTGACATTATCACATCTATAACCTTCACT 322 Query 362 ACATTCAAGGGAAAAACCTCGCCACCCTACGGATTAGATACCGAAAATAAGTTTGTACTC 421 ||||||||||| ||||| || |||||||| ||||| || || ||||| |||||||||||| Sbjct 323 ACATTCAAGGGGAAAACATCTCCACCCTATGGATTGGAAACGGAAAAGAAGTTTGTACTC 382 Query 422 AAGGA-AAAGAACGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGCGAAATTCTATA 480 ||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| |||| | Sbjct 383 AAGGACAAA-AACGGTGGCAAACCTGTTGGGTTCCATGGACGTGCTGGCGAAGCTCTACA 441 Query 481 TGCTCTTGGAGCGTATTTTACTACAACCACAACTCCTTTGACTCCTGCCAAGAAACTACC 540 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | Sbjct 442 TGCTCTTGGAGCGTATTTTGCTACAACCACAACTCCTGGGACTCCTGCCAAGAAACTGTC 501 Query 541 GGCTGTTGGTGGTGACGAAGGAACTGCCTGGGATGATGGTGCTTTCGATGGTGTTAAGAA 600 || ||||||| || ||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct 502 TGCAATTGGTGGGGATGAAGGAATTGCATGGGATGATGGTGCTTACGATGGTGTTAAGAA 561 Query 601 AGTGTATATAGGGCAAGCCCAAGATGGTATATCGGCCGTGAAGTTTGTGTACGATAAGGG 660 ||||| |||| |||| |||||||| ||||| ||||| ||||||| |||| | || || Sbjct 562 GGTGTACGTAGGACAAGGTCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACAAAGG 621 Query 661 CGCCGAGGATATTGTAGGAGATGAACATGGAAAT-GATACTCTACTCGGATTTGAAGAGT 719 ||| |||||||| ||||||| |||||||||||| | |||| |||||||||| || |||| Sbjct 622 CGCTGAGGATATCGTAGGAGGTGAACATGGAAAGCG-TACTTTACTCGGATTCGAGGAGT 680 Query 720 TCCAACTTGACTATCCAAGTGAATATATTACTGCAGTTGAAGGCACATATGACAAAATAT 779 | | || ||||||||||||||||| || || |||||||||||||| ||||| | ||| | Sbjct 681 TTGAGCTAGACTATCCAAGTGAATACATCACGGCAGTTGAAGGCACCTATGATAGAATCT 740 Query 780 TTGGTTTTGA-GACTGAAGTCATAAATATGCTTAGGTTCAAAACTAATAAGA-AAACGTC 837 |||| ||| | | | |||||||| ||||||||||||||| |||||||| | ||| ||| Sbjct 741 TTGGGAGTGATGGC-GTAGTCATAACTATGCTTAGGTTCAAGACTAATAA-ACAAATGTC 798 Query 838 T-CCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAAGAAGGTTGCAAGA 896 | || ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 799 TGCC-CCCTTTGGACTTGAAGCTGGCACAGCCTTCGAGCTCAAAGAGGAAGGCCACAAGA 857 Query 897 TCGTCGGGTTTCATGGAAAAGTAAGTGCGGTGCTTCATCAGTTTGGAGTCCATATCCTTC 956 || | || || |||||||||| || | | ||||||||||||||||||||||| || | | Sbjct 858 TCATTGGCTTCCATGGAAAAGCCAGCGAGTTGCTTCATCAGTTTGGAGTCCATGTCATGC 917 Query 957 CTGTCACCAACTGA 970 | ||||||||||| Sbjct 918 CAATCACCAACTGA 931 > Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1 Length=1085 Score = 424 bits (229), Expect = 1e-117 Identities = 389/467 (83%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 509 ACAACTCCTTTGACTCCTGCCAAGAAACTACCGGCTGTTGGTGGTGACGAAGGAACTGCC 568 |||||||| ||||||||||||||| | ||||| || ||||| |||| || ||| |||| Sbjct 534 ACAACTCCGTTGACTCCTGCCAAGCAGCTACCCGCACTTGGTAGTGATGATGGAGCTGCT 593 Query 569 TGGGATGATGGTGCTTTCGATGGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGT 628 |||||||||||| ||| || |||||||||||| ||||| |||| ||||||||||||||| Sbjct 594 TGGGATGATGGTTCTTACGTTGGTGTTAAGAAGGTGTACGTAGGACAAGCCCAAGATGGT 653 Query 629 ATATCGGCCGTGAAGTTTGTGTACGA-TAAGGGCGCCGAGGATATTGTAGGAGATGAACA 687 || || ||||| |||||||||||||| || | | | ||||| | |||||||| ||||| Sbjct 654 ATCTCAGCCGTTAAGTTTGTGTACGACAAAAGTC-CTGAGGAGGTCGTAGGAGAAGAACA 712 Query 688 TGGAAATGA-TACTCTACTCGGATTTGAAGAGTTCCAACTTGACTATCCAAGTGAATATA 746 |||||| || ||||||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 713 TGGAAA-GAGTACTCTACTCGGATTCGAAGAGTTAGTACTTGACTATCCAAGTGAATACA 771 Query 747 TTACTGCAGTTGAAGGCACATATGACAAAATATTTGGTTTTGA-GACTGAAGTCATAAAT 805 | || ||||| |||||||| || || ||||| ||||| ||| | || |||||||| | Sbjct 772 TCACCGCAGTCGAAGGCACCTACGATAAAATCTTTGGGAGTGATGGCT-CAGTCATAACT 830 Query 806 ATGCTTAGGTTCAAAACTAATAAGAAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACA 865 |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 831 ATGCTTAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACA 890 Query 866 GCCTTCGAACTCAAAGAAGAAGGTTGCAAGATCGTCGGGTTTCATGGAAAAGTAAGTGCG 925 ||||||||||||||||| || || ||| ||||| || || ||||||| || |||| Sbjct 891 GCCTTCGAACTCAAAGAGGAGGGCCACAAAATCGTTGGCTTCCATGGAAGAGCCAGTGAT 950 Query 926 GTGCTTCATCAG-TTTGGAGTCCATATCCTTCCTGTCACCAACTGAT 971 ||||||| || |||||||||||| ||| ||| ||| ||||||||| Sbjct 951 CTGCTTCA-CAAATTTGGAGTCCATGTCCGTCCCGTCTCCAACTGAT 996 > Ahg929469 jgi|Araly1|929469|scaffold_301926.1 Length=937 Score = 56.5 bits (30), Expect = 4e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 67 GATGGCTCAAAAGGTGGAAGCACAAGGAGG 96 |||||||||||||||||||||||||||||| Sbjct 20 GATGGCTCAAAAGGTGGAAGCACAAGGAGG 49 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43993846218 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5