BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16440.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1 1419 0.0
Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3 913 0.0
Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1 424 1e-117
Ahg929469 jgi|Araly1|929469|scaffold_301926.1 56.5 4e-07
> Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1
Length=1050
Score = 1419 bits (768), Expect = 0.0
Identities = 878/933 (94%), Gaps = 0/933 (0%)
Strand=Plus/Plus
Query 50 ATCAAAAGCAAGCAAAAGATGGCTCAAAAGGTGGAAGCACAAGGAGGTATTGGAGGAGAT 109
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 10 ATCAAAAGCAAGCAAAAGATGGTTCAAAAGGTGGAAGCACAAGGAGGTATGGGAGGAAAT 69
Query 110 GTATGGGATGATGGTGCTCACGACGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCTTGAT 169
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 70 GTATGGGATGATGGTGTTCACGACGGTGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGAT 129
Query 170 GGTGTTTCGTTTATCAATGTCGTGTACGAGAATGGTTCACAGGAAGTTGTAGGAGGTGAA 229
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 130 GGTGTGTCGTTTATTAATGTCGTGTACGAGAATGGTTCAGAGGAAGTTGTAGGAGGTGAA 189
Query 230 CATGGAAAGAAGTCACTAATTGGAATCGAAACGTTTGAGGTTGATGCAGACGACTACATC 289
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 190 CATGGAAAGAAGTCACTTATTGGAATCGAAACATTTGAGGTTGATGCAGACGACTACATC 249
Query 290 GTAGCAGTGCAGGTGACCTATGACAAAATATTTGGCTATGACTCCGACATCATCACATCC 349
|||||||||||||||||||| |||||||||||||||| |||||| || |||| |||||
Sbjct 250 GTAGCAGTGCAGGTGACCTACGACAAAATATTTGGCTTTGACTCTGAGGTCATTACATCT 309
Query 350 ATAACCTTCTCTACATTCAAGGGAAAAACCTCGCCACCCTACGGATTAGATACCGAAAAT 409
|| ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 310 ATCACCTTCTCTACATTCAAGGGAAAAACCTCTCCACCCTTTGGCTTAGATACCGAAAAT 369
Query 410 AAGTTTGTACTCAAGGAAAAGAACGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGC 469
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 370 AAGTTTGTACTCAAGGAAAAAAATGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGC 429
Query 470 GAAATTCTATATGCTCTTGGAGCGTATTTTACTACAACCACAACTCCTTTGACTCCTGCC 529
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 430 GAAATTCTATATGCTCTTGGAGCATATTTTACTACAACCACAACTCCTTTGAATCCTGCC 489
Query 530 AAGAAACTACCGGCTGTTGGTGGTGACGAAGGAACTGCCTGGGATGATGGTGCTTTCGAT 589
||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 490 AAGAAACTACCAGCAGTTGGTGGTGACGAAGGAACTGCATGGGATGATGGTGCTTACGAT 549
Query 590 GGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCGGCCGTGAAGTTTGTG 649
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 550 GGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCAGCAGTAAAGTTTGTG 609
Query 650 TACGATAAGGGCGCCGAGGATATTGTAGGAGATGAACATGGAAATGATACTCTACTCGGA 709
||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 610 TACGACAAGGGCGCTGCGGATATTGTAGGAGATGAGCATGGAAATGATACTCTACTCGGA 669
Query 710 TTTGAAGAGTTCCAACTTGACTATCCAAGTGAATATATTACTGCAGTTGAAGGCACATAT 769
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 670 TTTGAAGAGTTCCAACTTGACTATCCAAGTGAATACATTACAGCAGTTGAAGGCACATAT 729
Query 770 GACAAAATATTTGGTTTTGAGACTGAAGTCATAAATATGCTTAGGTTCAAAACTAATAAG 829
|| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 730 GATAAAATCTTTGGTAGTGAGACTGAAGTCATAAATATGCTTAGGTTCAAGACTAATAAG 789
Query 830 AAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAAGAAGGT 889
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 CAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAGGAAGGT 849
Query 890 TGCAAGATCGTCGGGTTTCATGGAAAAGTAAGTGCGGTGCTTCATCAGTTTGGAGTCCAT 949
| ||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||
Sbjct 850 TCCAAGATCGTCGGGTTCCATGGAAAAGTCAGTTCGCTGCTTCATCAGTTTGGAGTCCAT 909
Query 950 ATCCTTCCTGTCACCAACTGATCATCACatata 982
||||||| ||||||||||||||||||||||||
Sbjct 910 GTCCTTCCAGTCACCAACTGATCATCACATATA 942
> Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3
Length=1103
Score = 913 bits (494), Expect = 0.0
Identities = 777/914 (85%), Gaps = 18/914 (2%)
Strand=Plus/Plus
Query 66 AGATGGCTCAAAAGGTGGAAGCA-CAAGGAGGTATTGGAGGAGATGT-ATGGGATGATGG 123
||||||||||||| ||||||||| | ||| |||| ||||||| | | ||||||||||||
Sbjct 27 AGATGGCTCAAAAAGTGGAAGCAGC-AGGTGGTACCGGAGGAGCT-TCATGGGATGATGG 84
Query 124 TGCT-CACGACGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCTTGATGGTGTTTCGTTTA 182
|| | ||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 85 TG-TGCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCGTCTA 143
Query 183 TCAATGTCGTGTACGAGAATGG-TTCACAGGAAGTTGTAGGAGGTGAACATGGAAAGAAG 241
|||| |||||||| | ||| || ||| ||||| |||| |||||||||| |||||||||||
Sbjct 144 TCAAAGTCGTGTATGCGAA-GGATTCTCAGGATGTTGAAGGAGGTGAATATGGAAAGAAG 202
Query 242 TCACTAATTGGAATCGAAACGTTTGAGGTTGATGCAGACGACTACATCGTAGCAGTGCAG 301
| || ||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 203 ACGTTACTTGGATTCGAAACGTTTGAGGTTGATGCAGACGACTACATTGTAGCAGTGAAA 262
Query 302 GTGACCTATGACAAAATATTTGGCTATGACTCCGACATCATCACATCCATAACCTTCTCT 361
|||||||| ||||| |||||||| | ||||| ||||| |||||||| ||||||||| ||
Sbjct 263 GTGACCTACGACAACGTATTTGGCCAAGACTCTGACATTATCACATCTATAACCTTCACT 322
Query 362 ACATTCAAGGGAAAAACCTCGCCACCCTACGGATTAGATACCGAAAATAAGTTTGTACTC 421
||||||||||| ||||| || |||||||| ||||| || || ||||| ||||||||||||
Sbjct 323 ACATTCAAGGGGAAAACATCTCCACCCTATGGATTGGAAACGGAAAAGAAGTTTGTACTC 382
Query 422 AAGGA-AAAGAACGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGCGAAATTCTATA 480
||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| |||| |
Sbjct 383 AAGGACAAA-AACGGTGGCAAACCTGTTGGGTTCCATGGACGTGCTGGCGAAGCTCTACA 441
Query 481 TGCTCTTGGAGCGTATTTTACTACAACCACAACTCCTTTGACTCCTGCCAAGAAACTACC 540
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 442 TGCTCTTGGAGCGTATTTTGCTACAACCACAACTCCTGGGACTCCTGCCAAGAAACTGTC 501
Query 541 GGCTGTTGGTGGTGACGAAGGAACTGCCTGGGATGATGGTGCTTTCGATGGTGTTAAGAA 600
|| ||||||| || ||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 502 TGCAATTGGTGGGGATGAAGGAATTGCATGGGATGATGGTGCTTACGATGGTGTTAAGAA 561
Query 601 AGTGTATATAGGGCAAGCCCAAGATGGTATATCGGCCGTGAAGTTTGTGTACGATAAGGG 660
||||| |||| |||| |||||||| ||||| ||||| ||||||| |||| | || ||
Sbjct 562 GGTGTACGTAGGACAAGGTCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACAAAGG 621
Query 661 CGCCGAGGATATTGTAGGAGATGAACATGGAAAT-GATACTCTACTCGGATTTGAAGAGT 719
||| |||||||| ||||||| |||||||||||| | |||| |||||||||| || ||||
Sbjct 622 CGCTGAGGATATCGTAGGAGGTGAACATGGAAAGCG-TACTTTACTCGGATTCGAGGAGT 680
Query 720 TCCAACTTGACTATCCAAGTGAATATATTACTGCAGTTGAAGGCACATATGACAAAATAT 779
| | || ||||||||||||||||| || || |||||||||||||| ||||| | ||| |
Sbjct 681 TTGAGCTAGACTATCCAAGTGAATACATCACGGCAGTTGAAGGCACCTATGATAGAATCT 740
Query 780 TTGGTTTTGA-GACTGAAGTCATAAATATGCTTAGGTTCAAAACTAATAAGA-AAACGTC 837
|||| ||| | | | |||||||| ||||||||||||||| |||||||| | ||| |||
Sbjct 741 TTGGGAGTGATGGC-GTAGTCATAACTATGCTTAGGTTCAAGACTAATAA-ACAAATGTC 798
Query 838 T-CCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAAGAAGGTTGCAAGA 896
| || ||||||||| |||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 799 TGCC-CCCTTTGGACTTGAAGCTGGCACAGCCTTCGAGCTCAAAGAGGAAGGCCACAAGA 857
Query 897 TCGTCGGGTTTCATGGAAAAGTAAGTGCGGTGCTTCATCAGTTTGGAGTCCATATCCTTC 956
|| | || || |||||||||| || | | ||||||||||||||||||||||| || | |
Sbjct 858 TCATTGGCTTCCATGGAAAAGCCAGCGAGTTGCTTCATCAGTTTGGAGTCCATGTCATGC 917
Query 957 CTGTCACCAACTGA 970
| |||||||||||
Sbjct 918 CAATCACCAACTGA 931
> Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1
Length=1085
Score = 424 bits (229), Expect = 1e-117
Identities = 389/467 (83%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 509 ACAACTCCTTTGACTCCTGCCAAGAAACTACCGGCTGTTGGTGGTGACGAAGGAACTGCC 568
|||||||| ||||||||||||||| | ||||| || ||||| |||| || ||| ||||
Sbjct 534 ACAACTCCGTTGACTCCTGCCAAGCAGCTACCCGCACTTGGTAGTGATGATGGAGCTGCT 593
Query 569 TGGGATGATGGTGCTTTCGATGGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGT 628
|||||||||||| ||| || |||||||||||| ||||| |||| |||||||||||||||
Sbjct 594 TGGGATGATGGTTCTTACGTTGGTGTTAAGAAGGTGTACGTAGGACAAGCCCAAGATGGT 653
Query 629 ATATCGGCCGTGAAGTTTGTGTACGA-TAAGGGCGCCGAGGATATTGTAGGAGATGAACA 687
|| || ||||| |||||||||||||| || | | | ||||| | |||||||| |||||
Sbjct 654 ATCTCAGCCGTTAAGTTTGTGTACGACAAAAGTC-CTGAGGAGGTCGTAGGAGAAGAACA 712
Query 688 TGGAAATGA-TACTCTACTCGGATTTGAAGAGTTCCAACTTGACTATCCAAGTGAATATA 746
|||||| || ||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 713 TGGAAA-GAGTACTCTACTCGGATTCGAAGAGTTAGTACTTGACTATCCAAGTGAATACA 771
Query 747 TTACTGCAGTTGAAGGCACATATGACAAAATATTTGGTTTTGA-GACTGAAGTCATAAAT 805
| || ||||| |||||||| || || ||||| ||||| ||| | || |||||||| |
Sbjct 772 TCACCGCAGTCGAAGGCACCTACGATAAAATCTTTGGGAGTGATGGCT-CAGTCATAACT 830
Query 806 ATGCTTAGGTTCAAAACTAATAAGAAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACA 865
|||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 831 ATGCTTAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACA 890
Query 866 GCCTTCGAACTCAAAGAAGAAGGTTGCAAGATCGTCGGGTTTCATGGAAAAGTAAGTGCG 925
||||||||||||||||| || || ||| ||||| || || ||||||| || ||||
Sbjct 891 GCCTTCGAACTCAAAGAGGAGGGCCACAAAATCGTTGGCTTCCATGGAAGAGCCAGTGAT 950
Query 926 GTGCTTCATCAG-TTTGGAGTCCATATCCTTCCTGTCACCAACTGAT 971
||||||| || |||||||||||| ||| ||| ||| |||||||||
Sbjct 951 CTGCTTCA-CAAATTTGGAGTCCATGTCCGTCCCGTCTCCAACTGAT 996
> Ahg929469 jgi|Araly1|929469|scaffold_301926.1
Length=937
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 67 GATGGCTCAAAAGGTGGAAGCACAAGGAGG 96
||||||||||||||||||||||||||||||
Sbjct 20 GATGGCTCAAAAGGTGGAAGCACAAGGAGG 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5