BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16450.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3 1376 0.0
Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1 941 0.0
Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1 507 1e-142
> Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3
Length=1103
Score = 1376 bits (745), Expect = 0.0
Identities = 857/913 (94%), Gaps = 0/913 (0%)
Strand=Plus/Plus
Query 106 AGATGGCTCAAAAAGTGGAAGCAGGGGGTGGCGCCGGAGGAGCTTCATGGGATGATGGTG 165
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 27 AGATGGCTCAAAAAGTGGAAGCAGCAGGTGGTACCGGAGGAGCTTCATGGGATGATGGTG 86
Query 166 TCCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCATCTATCA 225
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 87 TGCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCGTCTATCA 146
Query 226 ACGTCGTGTATGCGAAGGACTCTCAGGATGTTGAAGGAGGTGAACACGGAAAGAAAACGT 285
| ||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||
Sbjct 147 AAGTCGTGTATGCGAAGGATTCTCAGGATGTTGAAGGAGGTGAATATGGAAAGAAGACGT 206
Query 286 TACTTGGATTTGAAACGTTTGAGGTTGATGCAGACGACTACATAGTAGCAGTGCAAGTGA 345
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 207 TACTTGGATTCGAAACGTTTGAGGTTGATGCAGACGACTACATTGTAGCAGTGAAAGTGA 266
Query 346 CCTACGACAACGTGTTTGGCCAAGACTCTGACATCATCACATCTATTACCTTCAATACAT 405
||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 267 CCTACGACAACGTATTTGGCCAAGACTCTGACATTATCACATCTATAACCTTCACTACAT 326
Query 406 TCAAGGGAAAAACATCTCCACCCTATGGATTGGAAACGCAAAAGAAGTTTGTACTCAAGG 465
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 327 TCAAGGGGAAAACATCTCCACCCTATGGATTGGAAACGGAAAAGAAGTTTGTACTCAAGG 386
Query 466 ACAAAAACGGTGGTAAACTTGTTGGCTTCCATGGACGCGCTGGTGAAGCTTTATATGCTC 525
||||||||||||| |||| |||||| ||||||||||| ||||| |||||| || ||||||
Sbjct 387 ACAAAAACGGTGGCAAACCTGTTGGGTTCCATGGACGTGCTGGCGAAGCTCTACATGCTC 446
Query 526 TTGGAGCATATTTTGCTACAACCACAACTCCTGTGACTCCTGCCAAAAAACTATCTGCAA 585
||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct 447 TTGGAGCGTATTTTGCTACAACCACAACTCCTGGGACTCCTGCCAAGAAACTGTCTGCAA 506
Query 586 TTGGTGGTGATGAAGGAACTGCATGGGACGACGGTGCGTACGATGGTGTCAAGAAGGTGT 645
||||||| |||||||||| ||||||||| || ||||| ||||||||||| ||||||||||
Sbjct 507 TTGGTGGGGATGAAGGAATTGCATGGGATGATGGTGCTTACGATGGTGTTAAGAAGGTGT 566
Query 646 ACGTAGGACAAGGCCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACAAAGGCGCGG 705
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 567 ACGTAGGACAAGGTCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACAAAGGCGCTG 626
Query 706 AGAATATCGTAGGAGGTGAACATGGAAAGCCTACTTTACTCGGATTCGAGGAGTTTGAGA 765
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 627 AGGATATCGTAGGAGGTGAACATGGAAAGCGTACTTTACTCGGATTCGAGGAGTTTGAGC 686
Query 766 TTGACTATCCAAGTGAATACATCACCGCAGTTGAAGGCACCTATGATAAAATCTTTGGGA 825
| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 687 TAGACTATCCAAGTGAATACATCACGGCAGTTGAAGGCACCTATGATAGAATCTTTGGGA 746
Query 826 GTGATGGCCTAATCATAACTATGCTTAGGTTCAAGACTAATAAACAAACGTCTGCTCCCT 885
|||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 747 GTGATGGCGTAGTCATAACTATGCTTAGGTTCAAGACTAATAAACAAATGTCTGCCCCCT 806
Query 886 TTGGACTTGAAGCTGGCACAGCCTTCGAACTTAAAGAGGAAGGGCACAAGATCGTTGGCT 945
|||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||
Sbjct 807 TTGGACTTGAAGCTGGCACAGCCTTCGAGCTCAAAGAGGAAGGCCACAAGATCATTGGCT 866
Query 946 TCCATGGAAAAGCCAGTGAGTTGCTTCATCAGTTTGGAGTCCATGTCATGCCACTCACCA 1005
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 867 TCCATGGAAAAGCCAGCGAGTTGCTTCATCAGTTTGGAGTCCATGTCATGCCAATCACCA 926
Query 1006 ACTGATCACATTA 1018
||||| |||||||
Sbjct 927 ACTGACCACATTA 939
Score = 191 bits (103), Expect = 1e-47
Identities = 147/167 (88%), Gaps = 7/167 (4%)
Strand=Plus/Plus
Query 1052 ATGTGATCTCTTGAAAATAACTTGTTATACCTATGATGGT-TA-T-GC-CTATCTATGTT 1107
||||||||||||| ||||| ||||||||||||| ||| | || | | ||| ||||||
Sbjct 939 ATGTGATCTCTTG--AATAAGTTGTTATACCTATAATGATATATTATCTTTATTTATGTT 996
Query 1108 TAAATGTTTTTAAGCGTTCTCTTTTGTGATGTTGGTCTTTATATAATGTT-ACGTATGAT 1166
||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||
Sbjct 997 TAAATGTTTTTAAGCGTTCCCTTTTGTGATGTTGGTCTTTATATAATGTTTACATGTGAT 1056
Query 1167 AGATTTGAATAAAGGTGGTTGATTCCATCCCTATAAATTGCACATTA 1213
||||||||||||| |||||||||||||| | ||| ||||||||||||
Sbjct 1057 AGATTTGAATAAAAGTGGTTGATTCCATGCATATTAATTGCACATTA 1103
> Ahg479101 jgi|Araly1|479101|fgenesh2_kg.3__1802__AT3G16440.1
Length=1050
Score = 941 bits (509), Expect = 0.0
Identities = 788/922 (85%), Gaps = 22/922 (2%)
Strand=Plus/Plus
Query 103 AAAAGATGGCTCAAAAAGTGGAAGCAGGGGGTGGCGCCGGAGGAGCT-TCATGGGATGAT 161
||||||||| |||||| ||||||||| || || |||||| | | ||||||||||
Sbjct 23 AAAAGATGGTTCAAAAGGTGGAAGCACAAGGAGGTATGGGAGGAAATGT-ATGGGATGAT 81
Query 162 GGTGTCCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCATCT 221
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 82 GGTGTTCACGACGGTGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCGTTT 141
Query 222 ATCAACGTCGTGTATGCGAA-GGACTCTCAGGATGTTGAAGGAGGTGAACACGGAAAGAA 280
|| || |||||||| | ||| || || |||| |||| |||||||||||| ||||||||
Sbjct 142 ATTAATGTCGTGTACGAGAATGGT-TCAGAGGAAGTTGTAGGAGGTGAACATGGAAAGAA 200
Query 281 A--ACGTTACTTGGATTTGAAACGTTTGAGGTTGATGCAGACGACTACATAGTAGCAGTG 338
|| ||| ||||| | ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 201 GTCAC-TTA-TTGGAATCGAAACATTTGAGGTTGATGCAGACGACTACATCGTAGCAGTG 258
Query 339 CAAGTGACCTACGACAACGTGTTTGGCCAAGACTCTGACATCATCACATCTATTACCTTC 398
|| |||||||||||||| | |||||| |||||||| |||| |||||||| ||||||
Sbjct 259 CAGGTGACCTACGACAAAATATTTGGCTTTGACTCTGAGGTCATTACATCTATCACCTTC 318
Query 399 AATACATTCAAGGGAAAAACATCTCCACCCTATGGATTGGAAAC-GCAAAAGAAGTTTGT 457
|||||||||||||||||| |||||||||| ||| || || || | |||| ||||||||
Sbjct 319 TCTACATTCAAGGGAAAAACCTCTCCACCCTTTGGCTTAGATACCG-AAAATAAGTTTGT 377
Query 458 ACTCAAGGACAAAAACGGTGGTAAACTTGTTGGCTTCCATGGACGCGCTGGTGAAGCTT- 516
||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||| ||
Sbjct 378 ACTCAAGGAAAAAAATGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGCGAAA-TTC 436
Query 517 TATATGCTCTTGGAGCATATTTTGCTACAACCACAACTCCTGTGACTCCTGCCAAAAAAC 576
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||
Sbjct 437 TATATGCTCTTGGAGCATATTTTACTACAACCACAACTCCTTTGAATCCTGCCAAGAAAC 496
Query 577 TATCTGCAATTGGTGGTGATGAAGGAACTGCATGGGACGACGGTGCGTACGATGGTGTCA 636
|| | ||| |||||||||| ||||||||||||||||| || ||||| ||||||||||| |
Sbjct 497 TACCAGCAGTTGGTGGTGACGAAGGAACTGCATGGGATGATGGTGCTTACGATGGTGTTA 556
Query 637 AGAAGGTGTACGTAGGACAAGGCCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACA 696
|||| ||||| |||| |||| ||||||||| |||||||| || ||||||| |||| |||
Sbjct 557 AGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCAGCAGTAAAGTTTGTGTACGACA 616
Query 697 AAGGCGCGGAGAATATCGTAGGAGGTGAACATGGAAA-GCCTACTTTACTCGGATTCGAG 755
| ||||| | | |||| ||||||| ||| |||||||| | |||| |||||||||| ||
Sbjct 617 AGGGCGCTGCGGATATTGTAGGAGATGAGCATGGAAATGA-TACTCTACTCGGATTTGAA 675
Query 756 GAGTTTGAGA-TTGACTATCCAAGTGAATACATCACCGCAGTTGAAGGCACCTATGATAA 814
||||| | | |||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 676 GAGTTCCA-ACTTGACTATCCAAGTGAATACATTACAGCAGTTGAAGGCACATATGATAA 734
Query 815 AATCTTTGGGAGTGATGGCCT-AA-TCATAACTATGCTTAGGTTCAAGACTAATAAACAA 872
||||||||| ||||| | | | || |||||| |||||||||||||||||||||||| |||
Sbjct 735 AATCTTTGGTAGTGA-GAC-TGAAGTCATAAATATGCTTAGGTTCAAGACTAATAAGCAA 792
Query 873 ACGTCTGCTCCCTTTGGACTTGAAGCTGGCACAGCCTTCGAACTTAAAGAGGAAGGG-CA 931
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 793 ACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAGGAAGGTTC- 851
Query 932 CAAGATCGTTGGCTTCCATGGAAAAGCCAGTGAGTTGCTTCATCAGTTTGGAGTCCATGT 991
||||||||| || ||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 852 CAAGATCGTCGGGTTCCATGGAAAAGTCAGTTCGCTGCTTCATCAGTTTGGAGTCCATGT 911
Query 992 CATGCCACTCACCAACTGATCA 1013
| | ||| ||||||||||||||
Sbjct 912 CCTTCCAGTCACCAACTGATCA 933
> Ahg479097 jgi|Araly1|479097|fgenesh2_kg.3__1798__AT3G16420.1
Length=1085
Score = 507 bits (274), Expect = 1e-142
Identities = 409/472 (87%), Gaps = 18/472 (4%)
Strand=Plus/Plus
Query 549 ACAACTCCTG-TGACTCCTGCCAAAAAACTATCTGCAATTGGTGGTGATGAAGGAACTGC 607
|||||||| | ||||||||||||| | ||| | ||| ||||| ||||||| ||| ||||
Sbjct 534 ACAACTCC-GTTGACTCCTGCCAAGCAGCTACCCGCACTTGGTAGTGATGATGGAGCTGC 592
Query 608 ATGGGACGACGGTGCGTACGATGGTGTCAAGAAGGTGTACGTAGGACAAGGCCAAGATGG 667
||||| || ||| | |||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 593 TTGGGATGATGGTTCTTACGTTGGTGTTAAGAAGGTGTACGTAGGACAAGCCCAAGATGG 652
Query 668 GATATCAGCCGTTAAGTTTGAGTACAAC-AAAGGCGCGGAGAATATCGTAGGAGGTGAAC 726
|| |||||||||||||||| |||| || |||| | | ||| | ||||||||| ||||
Sbjct 653 TATCTCAGCCGTTAAGTTTGTGTACGACAAAAGTC-CTGAGGAGGTCGTAGGAGAAGAAC 711
Query 727 ATGGAAAGCCTACTTTACTCGGATTCGAGGAGTTTGAG-A-TTGACTATCCAAGTGAATA 784
|||||||| |||| ||||||||||||| ||| || || | |||||||||||||||||||
Sbjct 712 ATGGAAAGAGTACTCTACTCGGATTCGAAGAG-TT-AGTACTTGACTATCCAAGTGAATA 769
Query 785 CATCACCGCAGTTGAAGGCACCTATGATAAAATCTTTGGGAGTGATGGCCT-AATCATAA 843
|||||||||||| ||||||||||| ||||||||||||||||||||||| || | ||||||
Sbjct 770 CATCACCGCAGTCGAAGGCACCTACGATAAAATCTTTGGGAGTGATGG-CTCAGTCATAA 828
Query 844 CTATGCTTAGGTTCAAGACTAATAAACAAACGTCTGCTCCCTTTGGACTTGAAGCTGGCA 903
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 829 CTATGCTTAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCA 888
Query 904 CAGCCTTCGAACTTAAAGAGGAAGGGC-ACAAGATCGTTGGCTTCCATGGAAAAGCCAGT 962
||||||||||||| |||||||| |||| |||| ||||||||||||||||||| |||||||
Sbjct 889 CAGCCTTCGAACTCAAAGAGGA-GGGCCACAAAATCGTTGGCTTCCATGGAAGAGCCAGT 947
Query 963 GAGT-TGCTTCATCAG-TTTGGAGTCCATGTCA-TGCCACTCACCAACTGAT 1011
|| | ||||||| || ||||||||||||||| | || || |||||||||
Sbjct 948 GA-TCTGCTTCA-CAAATTTGGAGTCCATGTCCGTCCCG-TCTCCAACTGAT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5