BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16460.1
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479105 jgi|Araly1|479105|fgenesh2_kg.3__1806__AT3G16460.1 2615 0.0
Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3 252 1e-65
> Ahg479105 jgi|Araly1|479105|fgenesh2_kg.3__1806__AT3G16460.1
Length=2342
Score = 2615 bits (1416), Expect = 0.0
Identities = 2099/2412 (87%), Gaps = 113/2412 (5%)
Strand=Plus/Plus
Query 28 CTCTCTTATTCACACCTAATCTTCATCTTCATCTTC-GCATTCATAG--TCTCTACGATC 84
|||| ||||||||||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct 1 CTCTTTTATTCACACCTAATCTTCATCTTCATCTTCATC-TTCATTGTCTCTCTACGATC 59
Query 85 AGATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAA 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGATCGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAA 119
Query 145 GAAAGTGCAGCTAACCTTCGATGAGATCATCTACTCAATCCAGGTCACGTACGACGGAGC 204
||||||| ||||||| |||||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 120 GAAAGTGGAGCTAACGTTCGATGACATCATTTACTCAATCAAGGTGACGTACGACGGAGC 179
Query 205 CACCGCTCTTCAATCCCAGCTTCGCGGCTCCGTTGGTCCCAAATCTGCTGAGTTCACTTT 264
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 180 CACCGCTCTTCAATCCCAGCTTCGTGGCTCCGTTGGGCCCAAATCTGCCGAGTTCACTTT 239
Query 265 GGCTCCGGACGAGTACATAACGGCCCTTTCTGCTTACGGCAAATCGTTGAG-TACGCAAG 323
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 240 GGCTCCGGACGAGTACATAACGGCCCTTTCTGCTTACGGCAAATCGTTG-GCTACGCAAG 298
Query 324 AAGTTATTACGGCGTTGACTTTCACAACCAACAAGACTTCTTATGGACCTTACGGTACCA 383
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 299 AAGTTATTACGGCGTTGACTTTCACAACCAACAAGGGGTCTTATGGACCTTACGGTAACA 358
Query 384 AATCCGGTTTCCAGATTTCTGCTCCGGAAGCCACCGGTAAACAGATCTCCGGTTTCCTTG 443
|||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 359 AATCTGGTTTCCAGATTTCTGCTCCTGAGGCCACCGGTAAACAGATCGCCGGTTTCCTTG 418
Query 444 GTACCAGCGGCAATGTTCTCAACACCATCGACGTTCACTATTCTCCCATACCTactggag 503
| |||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 419 GCACCAGCGGCAATGTTCTCAACACCATCGACGTTCACTACGCTCCCATACCCAC---CG 475
Query 504 gaactggcaccggaggaactggcacc---ggaactggcacc---ggaactggcactggaa 557
|||| ||| | ||||||||||||||| |||||||| ||| ||||||||||| || |
Sbjct 476 GAACCGGCTCAGGAGGAACTGGCACCGGAGGAACTGGTACCGAAGGAACTGGCACCGG-A 534
Query 558 ctggcactggcaccggaactggcactggaactggcactggaactggcaccggaggaactg 617
|| ||||| ||||| | || | ||| || || | |||||||| |||||||| | ||
Sbjct 535 --GGAACTGGTACCGG-A--GGGAGTGGCACCGG-A--GGAACTGGTACCGGAGGGAGTG 586
Query 618 gca-c--tggaactggcaccggtactggaggaactggcactgga---ac---tggcaccg 668
||| | |||||| | | || || |||||||||||||| ||| || ||||||||
Sbjct 587 GCACCGGAGGAACT-G-A-TGGCACCGGAGGAACTGGCACCGGAGGGACTGGTGGCACCG 643
Query 669 gaggaactggcactggaaccggcactgggactggcactggaaccggcactgggactggca 728
|||||||||| ||| ||||| | || ||||| ||| ||||| | || ||||| |
Sbjct 644 GAGGAACTGG---TGGCACCGG-A--GGAACTGG---TGGCACCGG-A--GGAACTGGTA 691
Query 729 ctggaaccggcaccgg-aggaactggcactggaacCGGCACCGGAGGAACTGGCACTGGA 787
| || | || || || | | || || | ||||| || |||||||| | |||||| ||
Sbjct 692 CCGG-A--GGAACTGGTA-GCACCGG-A--GGAACTGGTACCGGAGGGAGTGGCACCGG- 743
Query 788 ACCGGCACT-G-GG-ACCGGCACTGGGACCGGCACCGGAGGAACTGGCACTGGAACCGGA 844
| || ||| | || ||||| | || || ||||||||||| |||||||| || | |||
Sbjct 744 A--GGAACTGGTGGCACCGG-A--GGAACTGGCACCGGAGGGACTGGCACCGG-A--GGA 795
Query 845 ACTGGTACCGGTTCAGGTGCTCAGAAATTGGAAGCACAAGGCAACAGTACAGGAGGTACA 904
||||| |||||||||||||| ||||||||||| |||||||| ||| |||||||| |||
Sbjct 796 ACTGGCACCGGTTCAGGTGCCCAGAAATTGGATGCACAAGG---CAGCACAGGAGGCACA 852
Query 905 TCATGGGACGATGGATCCGATTACGATGGCGTGACCAAGATATACGCAAGCTACGGTGGG 964
| ||||||||||||||| ||||||||||| | || || ||||||| ||| | |||||||
Sbjct 853 GCTTGGGACGATGGATCCAATTACGATGGCCTAACAAAAATATACGTAAGATCCGGTGGG 912
Query 965 GAAGGTATTCAATACGTCAAGTTCGACTATGTGAAAGGTGGAGTAACAAAACAAGGAGTT 1024
|| |||||||||||||||||||||||||||||||||| |||| || |||| || | |
Sbjct 913 GACGGTATTCAATACGTCAAGTTCGACTATGTGAAAGATGGACAAAAAAAAGAAAGTGCC 972
Query 1025 CTACACGGTAAACAACAAAGTAGACAAAATC--CAAGAGAGTTTGTGATTAACCATCCGG 1082
||||||||| ||||||||||| | || ||| ||||||| ||||||||||||| |
Sbjct 973 CTACACGGT---CAACAAAGTAG--AGGTTCAACAACAGAGTTTTTGATTAACCATCCAG 1027
Query 1083 ATGAGTATCTTGTTTCTGTTGAGGGTTGGTATGA-AACCGTCATGCTAGGAATCCAGTTC 1141
|||| ||||||||||| ||||||||||||||||| || | |||| ||||||||||| |||
Sbjct 1028 ATGAATATCTTGTTTCCGTTGAGGGTTGGTATGATAA-CATCATCCTAGGAATCCAATTC 1086
Query 1142 AAAACGAACTTGAACACTTATGAGGTCAGCATCTAT-CCTTTCGAACCTAGTACTGATAC 1200
||||| |||||||| |||| ||| ||| | ||| ||| | | | ||| || |||
Sbjct 1087 AAAACCAACTTGAAAACTTCTGATTTCATCGGGTATGAATTT-G-A--TGGTAGTGGTAC 1142
Query 1201 TAAATTTACTCTTCAAGTTCAAGACAAGAAGATCATTGGATTTCACGGTTTCGCGGGCAA 1260
||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 1143 TAAATTTACTCTTCAAGTTCAAGACAAGAAGATCAGTGGATTTCATGGTTTCGCCAGTAC 1202
Query 1261 CCATGTTAATTCCATTGGAGCTTACTTCGTTCCAAAATCCTCCACCACTCCTGTTCCTTC 1320
|||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||| |
Sbjct 1203 CCATCTTAATTCCATTGGAGCTTATTTCGTTCCAAAATCTTCCACCACTAC---TCCTAC 1259
Query 1321 A-ACCC--CTTTGAAGCTGACCGCAGAAGGTGGTGAGACAGGAGCTGTATGGGACGATGG 1377
| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 AGTCCCTGCGAAGAAGCTGACCGCAGAAGGTGGTGAGACTGGAGCTGTATGGGACGATGG 1319
Query 1378 TTCTCACGATGATGTTAAGAAAGTTTATGTAGGACAAGGCCAAGATGGTGTTGCAGCTGT 1437
| |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1320 TGCTCACGATGATGTTAAAAAAGTTTATGTAGGACAAGGACAAGATGGTGTTGGAGCTGT 1379
Query 1438 CAAGTTTGAATACAAAAATGGTTCTCAGGTTGTTTTTGGAGATGAACGTGGAACGAGAAC 1497
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1380 CAAGTTTGAATACAAGAATGGTTCTCAGGTTGTTTTTGGAGATGAACATGGAAAGAAAAC 1439
Query 1498 ATTGCTAGGATTCGAAGAGTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGG 1557
||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1440 ATTGCTAGGATACGAAGAGTTTGAGCTTGAATCAGATGAATACATAACATCCGTGGAAGG 1499
Query 1558 ATA-CTACGaaaaaaaCTT-TGGAGTTGATA---CTGTAGTGACAACGCTGATTTTCAAG 1612
| | |||||| |||| ||| ||| |||| |||||||||| | |||||||||||||
Sbjct 1500 A-ACCTACGACAAAATCTTCGGGA-CCGATAGTGCTGTAGTGACGATGCTGATTTTCAAG 1557
Query 1613 ACTAGCAAGAACAAAACAGCTGGACCGTTTGGGATTGTATCTGGCACAAAGTTTGAATTC 1672
||||||||||||||||||||||||||||||||| ||| | | ||||| ||||| ||||
Sbjct 1558 ACTAGCAAGAACAAAACAGCTGGACCGTTTGGGCTTGAAGGTAGCACACCGTTTGTATTC 1617
Query 1673 AAGAAGGAAGGTTACAAGATCACTGGGTTCCACGGACGAGCTGGTGAGTATGTTAATGCT 1732
||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1618 AAGGAGGAAGGTTACAAGATCACTGGGTTCCACGGACGAGCTGGTGACTATATTAATGCT 1677
Query 1733 ATTGGAGCTTATTTAGCTCCATCAGGCACCACCCCTTTGACTCCTGCAACACAATCCCAA 1792
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATTGGAGCTTATTTAGCTCCATTAGGCACCACCCCTTTGACTCCTGCAACACAATCCCAA 1737
Query 1793 AAGCTAGAAGGAGCTGGTAGTGAGGCAGGAACTTTATGGGATGATGGTGCTTTCGACGGT 1852
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1738 AAGCTAGAAGGAGCTGGTAGTGAGGGAGGAACTTTATGGGATGATGGTGCTTTCGACGGT 1797
Query 1853 GTAAGGAAA-GTGTCTGTAGGACAAGCCCAAGATGGTATTGGAGCGGTCTCGTTTGTGTA 1911
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1798 GTAA-GAAAGGTGTCTGTAGGACAAGCCCAAGATGGTATTGGAGCGGTCACGTTTGTGTA 1856
Query 1912 CGACAAAGCAGGTCAGGTTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATT 1971
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1857 TGACAAAGCAGCTCAGGTTGTAGTTGGAAAAGAACATGGAAAAACCACATTGCTTGGATT 1916
Query 1972 TGAAGAGTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTACGA 2031
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1917 TGAAGAGTTGGAGCTTGACTATCCAAGTGAATACATTACGGCAGTTGATGGCACCTACGA 1976
Query 2032 TGCAATCTTTGGGAATG---AACCAATCGTAAATATGCTTAGGTTCACGACTAATAAGCG 2088
| |||||||||||| || || || |||||| |||||||||||||||||||||||||||
Sbjct 1977 TACAATCTTTGGGAGTGAAAAATCAGTCGTAACTATGCTTAGGTTCACGACTAATAAGCG 2036
Query 2089 AGTATCTATTCCTTTTGGAATAGG-AGCTGGCACAGCCTTCGAATTCAAGAAGGACGGTC 2147
| |||||| |||||||| || || |||||||||| |||||| |||||| ||||| || |
Sbjct 2037 AACATCTATGCCTTTTGG-ATTGGAAGCTGGCACACCCTTCGCATTCAAAAAGGAAGG-C 2094
Query 2148 -AAAAGATAGTTGGTTTCCATGGAAGAGCTGGTGATCTACTTCACAAATTTGGAGTCCAT 2206
| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2095 TACAAGATCGTTGGCTTCCATGGAAGAGCCGGTGATCTACTTCACAAATTTGGAGTCCAT 2154
Query 2207 GTCGCGCCAATAACCAAATAATTA-TGGAGATTTTAAGTATCTTTTGATGATAGTTTACA 2265
|||| |||||| ||||| | || | |||||||||||| |||||||||||||| ||| |||
Sbjct 2155 GTCGTGCCAATCACCAACTGATCATTGGAGATTTTAAATATCTTTTGATGATGGTTAACA 2214
Query 2266 CACTTTGAATAAGCTGATTCTACTTTATTTCTCTCTGTTTGTTTACTGCTTCAGTGTTTT 2325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 CACTTTGAATAAGCTGATTCTACTTTATTTCTCTCTGTTTGTTTACTGCTTCAGTGTTTT 2274
Query 2326 AAGTCTTCTCTTTGTGTTTGTTGCTGTTGTGTCTTTGATGGATTTTT-GTGATCCGATTT 2384
|| ||||| ||||||||| |||| | | |||||||||||||||||| ||||||| ||||
Sbjct 2275 AAATCTTCCCTTTGTGTT-GTTG-T-TC-TGTCTTTGATGGATTTTTTGTGATCCAATTT 2330
Query 2385 AATAAAAGAAGT 2396
||||||||||||
Sbjct 2331 AATAAAAGAAGT 2342
> Ahg479102 jgi|Araly1|479102|fgenesh2_kg.3__1803__AT3G16450.3
Length=1103
Score = 252 bits (136), Expect = 1e-65
Identities = 322/409 (79%), Gaps = 23/409 (6%)
Strand=Plus/Plus
Query 1828 ATGGGATGATGGTGCTTTCGACGGTG-TAAGGAAAGTGT-CTGTAGGACAAGCCCAAGAT 1885
||||||||||||||||| ||| |||| ||| ||| |||| | |||||||||| ||||||
Sbjct 529 ATGGGATGATGGTGCTTACGATGGTGTTAA-GAAGGTGTAC-GTAGGACAAGGTCAAGAT 586
Query 1886 GGTAT-TGGAGCGGTCT-CGTTTGTGTACGACAAA-GCAGGTCAGGTTGTAGAAGGAAAA 1942
|| || | ||| || | ||||| |||| ||||| || | | ||| | | | ||||
Sbjct 587 GGGATAT-CAGCCGT-TAAGTTTGAGTACAACAAAGGC-GCTGAGGATATCGTAGGAGGT 643
Query 1943 GAACATGGAAAACCCACATTGCTTGGATTTGAAGAGTTTGAGCTTGACTATCCAAGTGAA 2002
||||||||||| | || || || ||||| || ||||||||||| |||||||||||||||
Sbjct 644 GAACATGGAAAGCGTACTTTACTCGGATTCGAGGAGTTTGAGCTAGACTATCCAAGTGAA 703
Query 2003 TACATCACGGCAGTTGATGGCACCTACGAT-GCAATCTTTGGGAATGAAC-CA-A-TCGT 2058
||||||||||||||||| |||||||| ||| | ||||||||||| ||| | | || |
Sbjct 704 TACATCACGGCAGTTGAAGGCACCTATGATAG-AATCTTTGGGAGTGATGGCGTAGTCAT 762
Query 2059 AAATATGCTTAGGTTCACGACTAATAAGCGAGTATCTATTCCTTTTGGAATAGGAGCTGG 2118
|| |||||||||||||| ||||||||| | | | ||| || |||||| | | ||||||
Sbjct 763 AACTATGCTTAGGTTCAAGACTAATAAACAAATGTCTGCCCCCTTTGGACTTGAAGCTGG 822
Query 2119 CACAGCCTTCGAATTCAA-GAAGGACGGTCAAAAGAT-AGTTGGTTTCCATGGAAGAGCT 2176
|||||||||||| |||| || ||| || || ||||| | |||| |||||||||| |||
Sbjct 823 CACAGCCTTCGAGCTCAAAGA-GGAAGGCCACAAGATCA-TTGGCTTCCATGGAAAAGCC 880
Query 2177 GGTGA-TCTACTTCA-CAAATTTGGAGTCCATGTCGCGCCAATAACCAA 2223
| || | | ||||| || ||||||||||||||| |||||| |||||
Sbjct 881 AGCGAGT-TGCTTCATCAG-TTTGGAGTCCATGTCATGCCAATCACCAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90997595305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5