BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16470.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479107 jgi|Araly1|479107|fgenesh2_kg.3__1808__AT3G16470.2 2320 0.0
> Ahg479107 jgi|Araly1|479107|fgenesh2_kg.3__1808__AT3G16470.2
Length=1607
Score = 2320 bits (1256), Expect = 0.0
Identities = 1398/1467 (95%), Gaps = 8/1467 (1%)
Strand=Plus/Plus
Query 49 AAGGTT-A-AGAA-GAAAAGATGGCGAAAAAGTTGGAAGCTCAAGGTGGTCGTGGAGGAG 105
|||||| | |||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 56 AAGGTTAAGAGAAGGAAAAAATGGCGAAAAAGTTGGAAGCGCAAGGTGGTCGTGGAGGAG 115
Query 106 AAGAATGGGACGATGGTGGTGCTTACGAAAACGTCAAGAAAGTGTATGTTGGTCAAGGTG 165
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 116 AAGAATGGGACGATGGTGGTGCTTACGAAAACGTCAAGAAAGTCTATGTTGGTCAAGGTG 175
Query 166 ATTCTGGTGTTGTTTACGTCAAGTTTGATTACGAGAAAGATGGAAAAATCGTATCACACG 225
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 176 ATTCTGGTGTTGTTTACGTCAAGTTTGATTACGAGAAAGATGGCAAAATCGTATCACGTG 235
Query 226 AACATGGGAAGCAGACACTACTTGGAACAGAGGAGTTTGTGGTTGATCCAGAAGATTACA 285
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 AACATGGCAAGCAGACACTACTTGGAACAGAGGAGTTTGTGCTTGATCCAGAAGATTACT 295
Query 286 TAACATCAGTGAAAATTTACTACGAGAAGCTCTTTGGATCACCGATAGAGATCGTAACGG 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 TAACATCAGTGAAAGTTTACTACGAGAAGCTCTTTGGATCACCGATAGAGATCGTTACGG 355
Query 346 CTCTAATCTTTAAGACATTCAAGGGGAAAACTTCTCAGCCTTTTGGACTAACCTCTGGAG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCTAATCTTTAAGACATTCAAGGGGAAAACTTCTCAGCCTTTTGGACTAACCTCTGGAG 415
Query 406 AAGAAGCTGAGCTAGGAGGTGGCAAAATCGTTGGATTTCATGGAAGTTCAAGTGATTTGA 465
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 416 AAGAAGCTGAGCTAGGAGGTGGCAAGATCGTTGGATTTCATGGAAGTTCAAGTGATCTGA 475
Query 466 TCCATTCTGTTGGAGTTTATATAATTCCGTCGACTACACC-GCTGACTCCGCCGGTATCA 524
|||||||||| |||||||||||||||||||| ||||| || | |||||||||||||||||
Sbjct 476 TCCATTCTGTAGGAGTTTATATAATTCCGTCAACTACGCCAG-TGACTCCGCCGGTATCA 534
Query 525 GGTGGTCTGACCAAATTGGAAGCTCAAGGTGGTCGTGGTGGAGATGTTTGGGACGACGGT 584
||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 535 GGTGGTCCGACCAAATTGGAAGCTCAAGGTGGTCGTGGAGGAGATGTATGGGACGATGGT 594
Query 585 GGTGCTTATGACAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTTGTTTAT 644
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 595 GGTGCTTACGACAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTGGTTTAT 654
Query 645 GTCAAGTTTGATTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAAACA 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 GTCAAGTTTGATTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAGACA 714
Query 705 CTACTTGGAACAGAGGAGTTTGAGATTGATCCTGAAGACTACATCACCTATGTGAAAGTT 764
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 715 CTACTTGGAACAGAGGAGTTTGAGATTGATCCGGAAGACTACATCACATATGTGAAAGTT 774
Query 765 TACTACGAGAAACTTTTCGGGTCACCGATAGAGATCGTCACAGCTCTTATATTCAAGACA 824
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 TACTACGAGAAACTTTTCGGGTCACCGATAGAGATTGTCACAGCTCTTATATTCAAGACA 834
Query 825 TTCAAAGGAAAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGA 884
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTCAAGGGGAAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGA 894
Query 885 GGCGGCAAAATCGTTGGATTCCATGGAACTTCAAGTGATCTGATCCATTCTCTAGGAGCT 944
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 GGTGGCAAAATTGTTGGATTCCATGGAACTTCAAGCGATCTGATCCATTCTCTAGGAGCT 954
Query 945 TATATTATTCCTTCGTCCACACCATTGACTCCTTCTTCCAATACTATTCCAGCACAAGGT 1004
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TATATTGTTCCTTCGTCCACACCATTGACTCCTTCTTCCAATACTATTCCAGCACAAGGT 1014
Query 1005 GGAGATGGTGGAGTTGCTTGGGATGATGGTGTTCACGACAGTGTCAAGAAGATATATGTT 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGAGATGGTGGAGTTGCTTGGGATGATGGTGTTCACGACAGTGTCAAGAAGATATATGTT 1074
Query 1065 GGACAAGGTGACTCTTGTGTGACCTATTTCAAAGCTGACTATGAAAAGGCTTCAAAGCCT 1124
|||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 1075 GGACAAGGTGACTCTTGTGTCACATATTTCAAGGCTGACTATGAAAAGGCATCAAAGCCT 1134
Query 1125 GTCCTTGGAAGTGATCATGGGAAGAAGACATTGCTTGGAGCAGAGGAGTTTGTGCTTGGA 1184
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 1135 GTCCTTGGAAGTGATCATGGAAAGATGTCATTGCTTGGAGCAGAGGAGTTTGTGCTTGGA 1194
Query 1185 CCAGATGAGTATGTCACTGCCGTGTCGGGCTACTATGACAAGATTTTTAGTGTAGATGCC 1244
||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCAGATGAGTACATCACGGCTGTGTCGGGCTACTATGACAAGATTTTTAGTGTAGATGCG 1254
Query 1245 CCGGCAATCGTCTCGCTTAAGTTTAAAACAAACAAGAGAACATCTATCCCGTATGGACTC 1304
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1255 CCGGCAATCGTCTCGCTTAAGTTCAAGACAAACAAGAGAACATCTATCCCGTATGGACTC 1314
Query 1305 GAGGGAGGAACTGAATTCGTACTGGAGAAGAAAGACCACAAAATCGTTGGTTTCTATGGA 1364
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1315 GAGGGCGGAACTGAATTCGTGCTGGAGAAGAAAGACCACAAAATCGTTGGTTTCAATGGA 1374
Query 1365 CAAGCTGGTGAATATCTTTACAAACTTGGAGTCAATGTTGCGCCCATAGCCAAATGATGT 1424
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1375 CAAGCTGGTGACTATCTTTACAAACTTGGAGTCAATGTTGCGCCCATAGCTAACTGATGT 1434
Query 1425 GAAACCAATCTGGATATCCCTGAAATTTGAATAAGGTTATGTTGTGAGTTTATGAAGTTG 1484
|||| |||||| ||||||| | |||| ||||||| |||||||||||||||||| |||||
Sbjct 1435 GAAAACAATCTC-ATATCCCCGGAATTCGAATAAGATTATGTTGTGAGTTTATGGAGTTG 1493
Query 1485 TG-G-TCTAGTGTTGTATTTTGTTTTT 1509
|| | |||| |||||||||| ||||||
Sbjct 1494 TGTGGTCTAATGTTGTATTTGGTTTTT 1520
Score = 536 bits (290), Expect = 2e-151
Identities = 393/443 (89%), Gaps = 5/443 (1%)
Strand=Plus/Plus
Query 74 AAAGTTGGAAGCTCAAGGTGGTCGTGGAGGAGAAGAATGGGACGATGGTGGTGCTTACGA 133
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 547 AAA-TTGGAAGCTCAAGGTGGTCGTGGAGGAGATGTATGGGACGATGGTGGTGCTTACGA 605
Query 134 AAACGTCAAGAAAGTGTATGTTGGTCAAGGTGATTCTGGTGTTGTTTACGTCAAGTTTGA 193
|| || |||||||| |||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 606 CAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTGGTTTATGTCAAGTTTGA 665
Query 194 TTACGAGAAAGATGGAAAAATCGTATCACACGAACATGGGAAGCAGACACTACTTGGAAC 253
||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||
Sbjct 666 TTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAGACACTACTTGGAAC 725
Query 254 AGAGGAGTTTGTGGTTGATCCAGAAGATTACATAACATCA-GTGAAAATTTACTACGAGA 312
||||||||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||||||
Sbjct 726 AGAGGAGTTTGAGATTGATCCGGAAGACTACATCACAT-ATGTGAAAGTTTACTACGAGA 784
Query 313 AGCTCTTT-GGATCACCGATAGAGATCGTAACGGCTCTAATCTTTAAGACATTCAAGGGG 371
| || ||| || |||||||||||||| || || ||||| || || |||||||||||||||
Sbjct 785 AACT-TTTCGGGTCACCGATAGAGATTGTCACAGCTCTTATATTCAAGACATTCAAGGGG 843
Query 372 AAAACTTCTCAGCCTTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAA 431
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAA 903
Query 432 ATCGTTGGATTTCATGGAAGTTCAAGTGATTTGATCCATTCTGTTGGAGTTTATATAATT 491
|| |||||||| ||||||| |||||| ||| ||||||||||| | |||| |||||| ||
Sbjct 904 ATTGTTGGATTCCATGGAACTTCAAGCGATCTGATCCATTCTCTAGGAGCTTATATTGTT 963
Query 492 CCGTCGACTACACCGCTGACTCC 514
|| ||| | ||||| |||||||
Sbjct 964 CCTTCGTCCACACCATTGACTCC 986
Score = 518 bits (280), Expect = 6e-146
Identities = 542/664 (82%), Gaps = 35/664 (5%)
Strand=Plus/Plus
Query 537 AAA-TTGGAAGCTCAAGGTGGTCGTGGTGGAGATGTTTGGGACGACGGTGGTGCTTATGA 595
||| |||||||| |||||||||||||| ||||| | |||||||| ||||||||||| ||
Sbjct 84 AAAGTTGGAAGCGCAAGGTGGTCGTGGAGGAGAAGAATGGGACGATGGTGGTGCTTACGA 143
Query 596 CAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTTGTTTATGTCAAGTTTGA 655
|| || |||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 144 AAACGTCAAGAAAGTCTATGTTGGTCAAGGTGATTCTGGTGTTGTTTACGTCAAGTTTGA 203
Query 656 TTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAAACACTACTTGGAAC 715
||||||||||||||| || || ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 204 TTACGAGAAAGATGGCAAAATCGTATCACGTGAACATGGCAAGCAGACACTACTTGGAAC 263
Query 716 AGAGGAGTTTGAGATTGATCCTGAAGACTACATCACCT-ATGTGAAAGTTTACTACGAGA 774
||||||||||| | ||||||| ||||| ||| | || | | |||||||||||||||||||
Sbjct 264 AGAGGAGTTTGTGCTTGATCCAGAAGATTACTTAACATCA-GTGAAAGTTTACTACGAGA 322
Query 775 AACT-TTTCGGGTCACCGATAGAGATCGTCACAGCTCTTATATTCAAGACATTCAAAGGA 833
| || ||| || ||||||||||||||||| || ||||| || || ||||||||||| ||
Sbjct 323 AGCTCTTT-GGATCACCGATAGAGATCGTTACGGCTCTAATCTTTAAGACATTCAAGGGG 381
Query 834 AAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGCGGCAAA 893
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 382 AAAACTTCTCAGCCTTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAG 441
Query 894 ATCGTTGGATTCCATGGAACTTCAAGTGATCTGATCCATTCTCTAGGAGCTTATATTATT 953
||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||| |||
Sbjct 442 ATCGTTGGATTTCATGGAAGTTCAAGTGATCTGATCCATTCTGTAGGAGTTTATATAATT 501
Query 954 CCTTCGTCCACACCATTGACTCC-----T-TC---T--TCCAATACTA-TTCCA-GCACA 1000
|| || | || ||| ||||||| | || | ||| | | | || | || ||
Sbjct 502 CCGTCAACTACGCCAGTGACTCCGCCGGTATCAGGTGGTCCGAC-CAAATTGGAAGCTCA 560
Query 1001 AGGTGGA-GATGGTGGAGTTGCT-TGGGATGATGGTGTT-C--ACGACAGTGTCAAGAA- 1054
|||||| | ||| |||| || | ||||| ||||||| | | |||||| ||| |||||
Sbjct 561 AGGTGGTCG-TGGAGGAGATG-TATGGGACGATGGTGGTGCTTACGACAATGTAAAGAAA 618
Query 1055 GATATATGTTGGACAAGGTGACTCTTGTGTGACCTATTTCAAAGCT-GACTATGA-AAAG 1112
| | ||||||||||||||||||||| ||||| ||| |||| | | || || || ||||
Sbjct 619 GTT-TATGTTGGACAAGGTGACTCTGGTGTGGTTTATGTCAA-GTTTGATTACGAGAAAG 676
Query 1113 GCTTCAAAGCCTGTCCTTGGAAGTGATCATGGGAAGAAGACATTGCTTGGAGCAGAGGAG 1172
| ||| ||| | | ||| ||||||||| ||||| | |||||| ||||||||
Sbjct 677 A-TGGTAAGATTGTA-TC--ACTTGAACATGGGAAGCAGACACTACTTGGAACAGAGGAG 732
Query 1173 TTTG 1176
||||
Sbjct 733 TTTG 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5