BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16480.1
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1 1748 0.0
Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1 1339 0.0
> Ahg479109 jgi|Araly1|479109|fgenesh2_kg.3__1810__AT3G16480.1
Length=1839
Score = 1748 bits (946), Expect = 0.0
Identities = 1090/1158 (94%), Gaps = 15/1158 (1%)
Strand=Plus/Plus
Query 34 TCTTTTCAGCTCTGACTCGGCCTCTATCTCTCTCCCGTCGTCAGCCACATTCACCGGTAC 93
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCTATTCAGCTCTGACTCGGCCTCTGTCTCTCTCCCGTCGTCAGCCACATTCACCGGTAC 60
Query 94 TCATCTGACCAAGCTAGGGTTTCGCAGTCATCATCATGTACCGTACGGCAGCTTCTCGAG 153
|||||||||| | |||||||||||||| || |||||||||| ||||||||||| ||||
Sbjct 61 TCATCTGACCGATCTAGGGTTTCGCAG---TCGTCATGTACCGCACGGCAGCTTCACGAG 117
Query 154 CCAAGGCCCTTAAGGGCATTCTAAACCACAATTTTCGAGCTTCTCGTTATGCAAGTTCTA 213
|||| ||||||||||| ||||| |||| |||||| ||||||||||| |||||||||||||
Sbjct 118 CCAAAGCCCTTAAGGGAATTCTTAACCGCAATTTGCGAGCTTCTCGCTATGCAAGTTCTA 177
Query 214 GTGCTGTTGCAACGAG--C-TC-T-----TC---TTCCTCCAGCTGGCTAAGTGGAGGCT 261
|||||||||||||||| | || | || ||||||||||||||||||||||||||
Sbjct 178 GTGCTGTTGCAACGAGCTCTTCTTCGGCATCGGGTTCCTCCAGCTGGCTAAGTGGAGGCT 237
Query 262 ACTCTAGTTCACTTCCTTCTATGAACATTCCCTTGGCTGGTGTCTCTCTTCCACCACCAC 321
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 238 ACTCTAGTTCACTTCCTTCTATGGACATTCCCTTGACTGGTGTCTCTCTTCCACCATCAC 297
Query 322 TCTCTGACCATGTTGAGCCTAGCAAACTTAAGACCACTACTCTTCCAAATGGTCTGACTA 381
| |||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
Sbjct 298 TAGCTGACCATGTTGAGCCTAGCAAACTTAAAATTACTACTCTTCCAAATGGACTGAAAA 357
Query 382 TAGCCACTGAGATGTCTCCGAATCCAGCAGCTTCCATTGGTTTATACGTTGACTGTGGTT 441
||||| |||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 358 TAGCCTCTGAGATGTCTCCGAATCCAGCGGCCTCCATTGGTTTATATGTTGACTGTGGTT 417
Query 442 CTATTTATGAGACTCCTCAATTCCGTGGAGCGACGCACTTGCTTGAAAGGATGGCATTCA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTATTTATGAGACTCCTCAATTCCGTGGAGCGACGCACTTGCTTGAAAGGATGGCATTCA 477
Query 502 AGAGTACATTGAACAGAAGCCATTTTCGCCTTGTAAGGGAAATAGAGGCTATTGGAGGTA 561
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 AGAGTACATTGAACAGAAGCCATTTTCGCCTTGTAAGGGAAATAGAGGCTATGGGAGGTA 537
Query 562 ATACTTCAGCTTCTGCATCCCGAGAGCAGATGGGTTACACAATTGATGCTCTCAAAACCT 621
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ATACTTCAGCTTCTGCATCCCGAGAGCAGATGGGTTACACAATCGATGCTCTCAAAACCT 597
Query 622 ATGTTCCCGAAATGGTTGAAGTGCTTATTGATAGTGTGAGGAACCCTGCTTTTTTGGATT 681
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGTTCCCGAGATGGTTGAAGTGCTTATTGATAGTGTGAGGAACCCTGCTTTTTTGGATT 657
Query 682 GGGAAGTGAATGAAGAGCTCCGAAAGGTGAAAGTAGAGATAGGAGAATTCGCAACGAATC 741
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 GGGAAGTGAATGAAGAGCTCCGAAAGGTGAAAGTGGAGATAGGAGAATTCGCAACGAATC 717
Query 742 CAATGGGTTTTCTTTTGGAGGCAGTTCATTCTGCTGGTTACTCTGGCGCATTGGCAAATC 801
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAATGGGTTTTCTCTTGGAAGCAGTTCATTCTGCTGGTTACTCTGGCGCATTGGCAAATC 777
Query 802 CATTGTATGCACCTGAATCTGCAATTACTGGATTGACTGGGGAGGTCTTGGAGAATTTTG 861
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 778 CATTATATGCACCTGAATCTGCAATTACTGGATTGACTGGGGACGTCTTGGAGAAGTTTG 837
Query 862 TTTTTGAGAATTACACTGCTTCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCATGAAG 921
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTTCTGAGAATTACACTGCTCCACGAATGGTCCTAGCAGCTAGTGGAGTTGATCATGAAG 897
Query 922 AACTTCTAAAAGTGGTTGAGCCATTACTATCTGACCTCCCTAATGTACCCCGACCTGCGG 981
|||||||| |||||||||||||||||| |||||||| ||||||||| ||||||| ||||
Sbjct 898 AACTTCTATTAGTGGTTGAGCCATTACTTTCTGACCTTCCTAATGTAACCCGACCAGCGG 957
Query 982 AGCCAAAGTCTCAATATGTCGGTGGAGATTTCCGTCAACATACGGGTGGAGAGGCTACAC 1041
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 AGCCAAAATCTCAATATGTCGGTGGAGATTTCCGTCAACATACGGGTGAAGAGGCTACAC 1017
Query 1042 ATTTTGCGCTTGCTTTTGAAGTGCCAGGATGGAATAACGAGAAGGAAGCTATCATTGCAA 1101
||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||
Sbjct 1018 ATTTTGCGCTTGCTTTTGAAGTGCCGGGATGGAATAATGAGACGGAAGCTATTATTGCAA 1077
Query 1102 CTGTTCTTCAGATGCTTATGGGAGGAGGTGGCTCATTTTCTGCGGGAGGCCCTGGAAAAG 1161
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1078 CTGTTCTTCAGATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGCCCTGGAAAAG 1137
Query 1162 GAATGCACTCTTGGCTCT 1179
||||||||||| ||||||
Sbjct 1138 GAATGCACTCTCGGCTCT 1155
Score = 776 bits (420), Expect = 0.0
Identities = 508/548 (93%), Gaps = 15/548 (3%)
Strand=Plus/Plus
Query 1189 TTTTGAACCAACATCAGCAGTTTCAATCATGCACTGCATTCACTAGCGTCTTTAACAATA 1248
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1198 TTTTGAACCAACATCAGCAGTTTCAGTCATGCACTGCATTCACTAGCGTCTTTAACAATA 1257
Query 1249 CCGGATTGTTTGGAATCTATGGTTGCACGAGTCCTGAATTTGCTTCACAGGGAATTGAAT 1308
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1258 CTGGATTGTTTGGAATCTATGGTTGCACGAGTCCTGACTTTGCTTCACAGGGAATTGAAT 1317
Query 1309 TAGTAGCTAGTGAAATGAACGCTGTTGCT-GATGGAAAAGTTAATCAGAAACATCTTGAT 1367
||||||||| ||||||| | ||||||||| || ||| ||||||||||||||||||||||
Sbjct 1318 TAGTAGCTACTGAAATGTATGCTGTTGCTGGA-GGAGCAGTTAATCAGAAACATCTTGAT 1376
Query 1368 CGCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGGATGATTGCA 1427
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1377 CGCGCCAAAGCAGCAACGAAATCTGCAATTCTGATGAATCTAGAATCTCGGATGATTGCA 1436
Query 1428 GCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGGAAACCAGTAGACCAATTC 1487
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1437 GCAGAAGACATAGGTAGACAGATTCTCACTTACGGAGAGAGGAAACCAGTAGACCACTTC 1496
Query 1488 TTGAAGACAGTAGACCAACTTACCTTAAAGGACATTGCAGATTTCACTAGCAAGGTTATC 1547
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 TTGAAGACAGTAGACCAACTTACCTTAAAGGACATTGCAGATTTCACCAGCAAGGTTATC 1556
Query 1548 ACAAAGCCTTTGACAATGGCAACTTTCGGAGACGTGTTGAATGTTCCAAGCTATGACTCC 1607
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GCAAAGCCTTTGACAATGGCATCTTTCGGAGACGTGTTGAATGTTCCAAGCTATGACTCC 1616
Query 1608 GTAAGCAAAAGATTTCGCTGAAGAGTGAAGAAGTAAAAAAGATCTTTTTACATCATAAGA 1667
||||||||||||||||| |||||| || || || ||||||| ||||| ||||
Sbjct 1617 GTAAGCAAAAGATTTCGTTGAAGA---AA-AA-TA-------TCTTTTTGCATCAGAAGA 1664
Query 1668 TAGAGTTGGGACCTGTAGAATAAAGATAGCCttttttttGGAGATCCAACCAAATTTTTT 1727
||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1665 TAGAGTTGGGACCTGTATAATAAAGATAGCCTTATTTGAG-AGATCCAACCAAATTTTTT 1723
Query 1728 GTTTCATC 1735
|||||||
Sbjct 1724 ATTTCATC 1731
Score = 156 bits (84), Expect = 7e-37
Identities = 100/108 (93%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1773 AATGGTGACAAATTACGCCCATGTCTCCAATTTCGTTGTTGCGTATTTCTTCTCTTCGGT 1832
||||||||||||||| ||||||||||||||||| || || | | |||||||||||||||
Sbjct 1732 AATGGTGACAAATTAAGCCCATGTCTCCAATTTTTTTATTTCTTTTTTCTTCTCTTCGGT 1791
Query 1833 TAGTGAATAATGATTGATACGTTTACCAACTTTTTTCAGCTTCAATTT 1880
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1792 TAGTGAATAATGATTGATACGTTTACCAACTTTTTTCTGCTTCAATTT 1839
> Ahg474319 jgi|Araly1|474319|fgenesh2_kg.1__4273__AT1G51980.1
Length=1863
Score = 1339 bits (725), Expect = 0.0
Identities = 1144/1346 (85%), Gaps = 30/1346 (2%)
Strand=Plus/Plus
Query 300 GGTGTCTCTCTTCCACCACCACTCT-CTGACCATGTTGAGCCTAGCAAACTTAAGACCAC 358
||||| |||||||| || ||||| | |||||||||| ||||| ||||||||||||| |||
Sbjct 287 GGTGTTTCTCTTCCTCCGCCACT-TGCTGACCATGTCGAGCCGAGCAAACTTAAGATCAC 345
Query 359 TACTCTTCCAAATGGTCTGACTATAGCCACTGAGATGTCTCCGAATCCAGCAGCTTCCAT 418
|||||||||||||||||| | || ||| | |||| |||||||||||| |||||||| ||
Sbjct 346 TACTCTTCCAAATGGTCTTAAGATTGCCTCAGAGACGTCTCCGAATCCGGCAGCTTCGAT 405
Query 419 TGGTTTATACGTTGACTGTGGTTCTATTTATGAGACTCCTCAATTCCGTGGAGCGACGCA 478
||||||||| ||||| |||||||||||||||||| | ||| | |||| |||||| |||||
Sbjct 406 TGGTTTATATGTTGATTGTGGTTCTATTTATGAGGCGCCTTATTTCCATGGAGCTACGCA 465
Query 479 CTTGCTTGAAAGGATGGCATTCAAGAGTACATTGAACAGAAGCCATTTTCGCCTTGTAAG 538
|| |||||||| ||||| |||||||| || |||||||||| ||||||||| ||||| ||
Sbjct 466 TTTACTTGAAAGAATGGCTTTCAAGAGCACGTTGAACAGAACCCATTTTCGTCTTGTGAG 525
Query 539 GGAAATAGAGGCTATTGGAGGTAATACTTCAGCTTCTGCATCCCGAGAGCAGATGGGTTA 598
||||||||||||||||||||| || || || |||||||| || |||||||| ||| ||||
Sbjct 526 GGAAATAGAGGCTATTGGAGGAAACACATCCGCTTCTGCGTCTCGAGAGCAAATGAGTTA 585
Query 599 CACAATTGATGCTCTCAAAACCTATGTTCCC-GAAATGGTTGAAGTGCTTATTGATAGTG 657
||| ||||||||||| || ||||||| |||| |||||||| ||||| |||||||| ||||
Sbjct 586 CACTATTGATGCTCTTAAGACCTATG-TCCCTGAAATGGTCGAAGTTCTTATTGACAGTG 644
Query 658 TGAGGAACCCTGCTTTTTTGGATTGGGAAGTGAATGAAGAGCTCCGAAAGGTGAAAGTAG 717
|||| || |||||||| ||||| |||||||||||||||||||| || ||| |||| ||||
Sbjct 645 TGAGAAATCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGCTACGGAAGATGAAGGTAG 704
Query 718 AGATAG-GAGAA-TTCGCAACGAATCCAATGGGTTTTCTTTTGGAGG-CAGTTCATTCTG 774
|| ||| | ||| || |||| ||| || |||||||| || ||||||| || |||||||||
Sbjct 705 AGGTAGCG-GAACTT-GCAAAGAACCCTATGGGTTTCCTCTTGGAGGCCA-TTCATTCTG 761
Query 775 CTGGTTACTCTGGCGCATTGGCAAATCCAT-TGTATGCACCTGAATCTGCAATTA-CTGG 832
||||||||||||| |||||||||| ||| | |||| || || || ||||| ||| |
Sbjct 762 CTGGTTACTCTGGTGCATTGGCAAGTCC-TCTGTACGCGCCGGAGTCTGC-TTTAGATAA 819
Query 833 ATTGACTGGGGAGGTCTTGG-AGAATTTTGTTTTTGAGAATTACACTGCTTCACGAATGG 891
||||| ||||||| |||||| || | ||| | |||||||| ||||||| |||| ||||
Sbjct 820 ATTGAATGGGGAGCTCTTGGAAG-AGTTTATGACTGAGAATTTCACTGCTACACGGATGG 878
Query 892 TCCTAGCAGCTAGTGGAGTTGATCATGAAGAACTTCTAAAAGTGGTTGAGCCATTACTAT 951
| || || || |||||||| || ||||| |||||| ||||||| | |||||||||| | |
Sbjct 879 TACTGGCGGCAAGTGGAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAATTT 938
Query 952 CTGACCTCCCTAATGTACCCCGACC-TGCGGAGCCAAAGTCTCAATATGTCGGTGGAGAT 1010
||||||| ||||||||||| || || | ||||||||| ||||| ||||| |||||||||
Sbjct 939 CTGACCTTCCTAATGTACCACG-CCAAGTGGAGCCAAAATCTCAGTATGTTGGTGGAGAT 997
Query 1011 TTCCGTCAACATACGGGTGGAGAGGCTACACATTTTGCGCTTGCTTTTGAAGTGCCAGGA 1070
|| || |||||||| ||||||||||||||||| |||||| |||||||||| ||||| ||
Sbjct 998 TTTCGCCAACATACTGGTGGAGAGGCTACACACTTTGCGGTTGCTTTTGAGGTGCCTGGC 1057
Query 1071 TGGAATAACGAGAAGGAAGCTATCATTGCAACTGTTCTTCAGATGCTTATGGGAGGAGGT 1130
|||||||||||||| |||||| ||| || |||||||| |||||||||||||||||||||
Sbjct 1058 TGGAATAACGAGAAAGAAGCTGTCACCGCCACTGTTCTCCAGATGCTTATGGGAGGAGGT 1117
Query 1131 GGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCTATCTTCGCCTT 1190
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||| || ||
Sbjct 1118 GGCTCATTCTCTGCAGGAGGTCCTGGAAAAGGAATGCACTCGTGGCTCTATCGCCGTGTT 1177
Query 1191 TTGAACCAACATCAGCA-GTTTCAATCATGCACTGCATTCACTAGCGTCTTTAACAATAC 1249
| || || ||||| | ||| || ||||||||||||||||||||| |||||||||| ||
Sbjct 1178 CTAAATGAATATCAGGAAGTT-CAGTCATGCACTGCATTCACTAGCATCTTTAACAACAC 1236
Query 1250 CGGATTGTTTGGAATCTATGGTTGCACGAGTCCTGAATTTGCTTCACAGGGAATTGAATT 1309
||||||||||||||||||||||||| ||||||||||||| ||| || | | |||||||||
Sbjct 1237 CGGATTGTTTGGAATCTATGGTTGCTCGAGTCCTGAATTCGCTGCAAAAGCAATTGAATT 1296
Query 1310 AGTAGCTAGTGAAATGAACGCTGTTGCTG-ATGGAAAAGTTAATCAGAAACATCTTGATC 1368
|| ||||| ||| |||| | |||||| | | ||||||||||| ||| |||||||| |
Sbjct 1297 AGCAGCTAAAGAACTGAAAGATGTTGCAGGA-GGAAAAGTTAACCAGGCGCATCTTGACC 1355
Query 1369 GCGCCAAAGCAGCAACAAAATCTGC-GATTCTGATGAATCTGGAATCTCGGATGATTGCA 1427
| ||||| ||||| ||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 1356 GTGCCAAGGCAGCCACAAAATCTGCAG-TTCTGATGAATTTGGAATCTCGGATGATTGCT 1414
Query 1428 GCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGGAAACCAGTAGACCAATTC 1487
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1415 GCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGGAAACCAGTTGACCAATTC 1474
Query 1488 TTGAAGACAGTAGACCAACTTACCTT-AAAGGACATTGCAGATTTCACTAGCAAGGTTAT 1546
|||||||||||||||||||| ||||| |||| |||||||||| ||||| |||||||||||
Sbjct 1475 TTGAAGACAGTAGACCAACTAACCTTGAAAG-ACATTGCAGACTTCACCAGCAAGGTTAT 1533
Query 1547 CACAAAGCCTTTGACAATGGCAAC-TTTCGGAGACGTGTTGAATGTTCCAAGCTATGACT 1605
|||||||||||||||||| | ||| ||||| |||||| |||||| |||||||||
Sbjct 1534 TTCAAAGCCTTTGACAATGGGTGCCTTT-GGAGATGTGTTGGCTGTTCCGAGCTATGACA 1592
Query 1606 CCGTAAGCAA-AAGATTTCGCTGAAG 1630
|| |||||| || |||||| |||||
Sbjct 1593 CCATAAGCAGCAA-ATTTCGTTGAAG 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5