BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16490.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479110 jgi|Araly1|479110|fgenesh2_kg.3__1811__AT3G16490.1 1884 0.0
> Ahg479110 jgi|Araly1|479110|fgenesh2_kg.3__1811__AT3G16490.1
Length=1379
Score = 1884 bits (1020), Expect = 0.0
Identities = 1170/1242 (94%), Gaps = 11/1242 (1%)
Strand=Plus/Plus
Query 206 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTTGGTATGAAGAAGAGCAAAGAG 265
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 142 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTCGGTATGAAGAAGAGCAAAGAG 201
Query 266 AAAGAGAACTGTGTTTCCGGCGACGT-TGGAGGTGAAGCCGGTGGTTCTAACATTCACCG 324
||||||||| |||| ||||| ||| | |||||| ||||||||||| ||||||||||||||
Sbjct 202 AAAGAGAACCGTGTCTCCGGTGAC-TGTGGAGGAGAAGCCGGTGGGTCTAACATTCACCG 260
Query 325 GAAAGTTCTCCAAGCTGACTCCGTCTGGCTCAGAACTTACCTTGCGGAAACAGACAAAGA 384
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 GAAAGTTCTTCAAGCTGACTCCGTCTGGCTCAGAAGTTACCTTGCGGAAACAGACAAAGA 320
Query 385 ACAGAACAAACACGCGATTGCGGTTGCTGCTGCTACAGCCGCGGCTGCTGACGCAGCGGT 444
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 321 ACAGAACAAACACGCGATTGCGGTTGCTGCCGCTACAGCCGCGGCCGCAGACGCAGCGGT 380
Query 445 TGCAGCGGCTCAAGCTGCTGTGGCGGTGGTCAGGTTAACAAGTAACGGAAGAAGCGGAGG 504
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 381 TGCAGCGGCTCAGGCTGCTGTTGCGGTCGTCAGGTTAACAAGTAACGGAAGAACCGGAGG 440
Query 505 ATATTCCGGGAACGCAATGGAGCGGTGGGCCGCAGTGAAAATTCAATCAGTCTTCAAGGG 564
|||||| |||| | |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 441 ATATTCGGGGACCACAATGGAGCGGTGGGCGGCCGTGAAAATTCAATCAGTCTTCAAGGG 500
Query 565 CTATTTGGCGAGAAAAGCGTTACGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 624
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 501 CTATTTGGCAAGAAAAGCGTTAAGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 560
Query 625 AAGAGGATACTTAGTCCGCAAACGCGCCGCCGAAACGCTGCATAGCATGCAAGCTCTCAT 684
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 561 AAGAGGTTACTTAGTCCGCAAACGCGCCGCCGAAACACTTCATAGCATGCAAGCTCTCAT 620
Query 685 TAGAGCTCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACATGTTTCATCCTCG 744
||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 621 TAGGGCCCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACTTGTTTAATCCTCG 680
Query 745 ACACTCACTTGAGAGGTTGGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 804
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ACACTCACTTGAGAGGTTTGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 740
Query 805 CTCTGTAGAGAAACAGAGTAATCACAACAACAATGCGTACGATGAGACCAGTCCCAAGAT 864
||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 741 CTCTGTAGAGAAACAGAGT-A--ACAACAACAATGCGTACGATGAAACCAGTCCCAAGAT 797
Query 865 TGTGGAGATTGATACTTACAAGACGAAATCAAGATCAAAGAGAATGAATGTGGCTGTATC 924
|||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 798 TGTGGAGATTGACACATACAAAACGAAATCAAGATCAAAGAGAATGAATGTTGCTGTATC 857
Query 925 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 917
Query 985 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAATGGCTAATAA 1044
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 918 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAACGGCTAATAA 977
Query 1045 TAACTATTACTACACGCCCCCATCGCCGGCGAAAAGTGTTTGCAGAGACGCTTGTTTTAG 1104
| ||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 978 TCACTATTACTACACACCGCCTTCGCCGGCGAAAAGCGTTTGCAGAGACGCTTGTTTTAG 1037
Query 1105 GCCAAGTTATCCTGGTTTGATGACACCTAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1164
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1038 GCCAAGTTATCCTGGTTTGATGACACCAAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1097
Query 1165 CAAGGTACGTTCGCATAGTGCACCGAGACAACGTCCTGATAGAAAAAGATTGTCACTTGA 1224
||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||
Sbjct 1098 TAAGGTACGTTCGCATAGTGCACCAAGACAACGTCCTGATAGGAAACGGTTGTCACTTGA 1157
Query 1225 TGAGATTATGGCGGCTAGAAGTAGCGTTAGTGGTGTGAGGATGGTGCAACCACAACCACA 1284
|||||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| ||
Sbjct 1158 TGAGATTATGGCCGCTAGAAGTAGCGTTAGCGGTGTTAGGATGGCGCAACCGCAACCGCA 1217
Query 1285 ACCGCAAACGCAAA--C----GCAGCAACAGAAACGCTCTCCTTGTTCGTATGATCATCA 1338
| || ||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1218 AACGGAAACGCAAATGCAAATGCAGCAACAGAAACGCTCTCCTTGTTCGTATGATAATCA 1277
Query 1339 GTTTCGTCAGAACGAGACTGATTTTAGATTCTATAATTAGTAAAAAACGTTATTTTCGTC 1398
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1278 GTTTCGTCAGAACGAGAGTGATTTTAGATTCTATAATTAGTAAGAAACGTTATTTTCGTT 1337
Query 1399 CTTAAAGAAAATATCGTCATAGCCTTTGACTTTTCATTTATG 1440
||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1338 CTTAAAGGAAATATCGTCATAGCCTTTGACTTTTCATTGATG 1379
Score = 215 bits (116), Expect = 8e-55
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 18 tttttttttACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 77
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTTTAACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 60
Query 78 AAATTTTGTTTTCCTCTTCATTTTCTGCATACGAAAAGTTCTTTTGGGTATTTGTGATTT 137
||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 AAAATTTGTTTTCCTCTTCATTTTTTGCATACCAAAAGTTCTTTTGGGTATTTGTGATTT 120
Query 138 GTCATCTC 145
||||||||
Sbjct 121 GTCATCTC 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5