BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16510.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479112 jgi|Araly1|479112|fgenesh2_kg.3__1813__AT3G16510.1 819 0.0
> Ahg479112 jgi|Araly1|479112|fgenesh2_kg.3__1813__AT3G16510.1
Length=1247
Score = 819 bits (443), Expect = 0.0
Identities = 646/737 (88%), Gaps = 42/737 (6%)
Strand=Plus/Plus
Query 582 ACCAGGATCCACCGGTATCATCATCACAC-GTTTACACGAATCCGATGGATATACCGTCT 640
||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||||||||||
Sbjct 538 ACC-GGATTTACCGGCATCATCACCAC-CGGTTTACTCGAATCCGATGGATATACCGTCT 595
Query 641 GATTTCTCGTCGGCGACGACAAATTATCCTCCGCCGCAATCGTCTGAAGCAAATTTCTAT 700
|||| ||||||| ||||||| |||||||||||| | | |||||||||||||| |||||||
Sbjct 596 GATTACTCGTCGACGACGACGAATTATCCTCCG-C-C-ATCGTCTGAAGCAAGTTTCTAT 652
Query 701 CCACCATTATCATCGATTGGATATCCTCCGTCGTCTCCGCCGCAACATTATTCCTCACCG 760
|||||| |||| || |||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 653 CCACCACTATCGTCTATTGGATATCCTCCGTCGTCACCGCCGCAAGATTATTCCGCACCG 712
Query 761 CCGTACCCGTACCCGAA--C----CCGTATCAGTACCATTCTCATTACCCGGAACAGCCA 814
||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||
Sbjct 713 CCGTACCCGTACCCGAACCCGAATCCGTACCAGTACGATTCTCATTACCCGGAACAGCCA 772
Query 815 GTCGCTGTTTATCCACCTCCGCCACCCTCTGCATCGAATTTATATCCTCCGCCGTATTAC 874
| | | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 773 GCCACCGTTTATCCACCTCCGTCACCCTCTGCCTCGAATTTATATCCTCCGCCGTATTAC 832
Query 875 AGTACTTCTCCGCCGCAGCATCAATCCTATCCGCCGCCTCCCGGCCATTCGTTCCACCAA 934
|||||||||||| |||| ||||||||||||||||||||||| || ||||| | |||||||
Sbjct 833 AGTACTTCTCCGACGCATCATCAATCCTATCCGCCGCCTCCTGGTCATTCATACCACCAA 892
Query 935 ACGCAACCGTCACAGTCGTTTCACGGGTTCGCGCCTTCGTCTCCGCAGAATCAGCACGGG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACGCAACCGTCACAGTCGTTTCACGGGTTCGCGCCTTCGTCTCCGCAGAATCAGCACGGG 952
Query 995 TATGGTTATCCGCCGCCGACGTCACCGGGATATGGATACGGTTGTCCGACTACACAAGTG 1054
| || |||||||||| ||||||||||||||||||||||| | |||||||| || |||| |
Sbjct 953 TGTGTTTATCCGCCGACGACGTCACCGGGATATGGATACTGCTGTCCGACGACGCAAGCG 1012
Query 1055 CCGCCGAAGAATAATAATAATAAACCAGGGCTTGGGCTTGGGCTTGGAGTGGGAGCTGGG 1114
||||||||||| |||||||| || | ||||||||| | |||||||||||
Sbjct 1013 CCGCCGAAGAAGAATAATAA-AA-C-AGGGCTTGGA-----------A-TGGGAGCTGGG 1057
Query 1115 CTTCTGGGAGGAGCATTGGGTGGGCTCTTAATCAGTGATATAGTATCCGACATTGGtttt 1174
|||||||||||||||||||||||||| |||||| | |||||||||||||||||| | |||
Sbjct 1058 CTTCTGGGAGGAGCATTGGGTGGGCTATTAATCGGCGATATAGTATCCGACATTTGCTTT 1117
Query 1175 gatttttaac-ct--t-ttta--ataacttgtgaa-aattaagaaactccttttttcctg 1227
||||||||| || | ||| ||||||||| || |||||||||| |||||||| | ||
Sbjct 1118 GATTTTTAATACTAGTATTTTTTATAACTTGT-AAGAATTAAGAAATTCCTTTTTGC-TG 1175
Query 1228 ctttttttttCTTTCTAATTGTTTGTCGTGTTGTCGATAATTAACAAAATAATAT-CTAC 1286
|||||||||| || ||||||||| |||||||||||||||| ||||||||| || ||||
Sbjct 1176 CTTTTTTTTTGTT---AATTGTTTG-CGTGTTGTCGATAATTTACAAAATAA-ATTCTAC 1230
Query 1287 AATTTTGTTTACCACTT 1303
|||||||||||||||||
Sbjct 1231 AATTTTGTTTACCACTT 1247
Score = 808 bits (437), Expect = 0.0
Identities = 524/565 (93%), Gaps = 9/565 (2%)
Strand=Plus/Plus
Query 12 TTATTTTACGCGTAGATTCTTTTATATAATCTATTTTTGACGGA-ATCAATAATCATCTC 70
||||||||||||||||||| ||||| | |||||||||||||||| | ||||||| |||||
Sbjct 1 TTATTTTACGCGTAGATTCATTTAT-TTATCTATTTTTGACGGACA-CAATAATTATCTC 58
Query 71 CTTCTCTTTCGATCC-CTCTCTGC-CTTAGCCATGGCGAATCTTACCTTAGAGCTCAACG 128
|||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 59 CTTCTCTTTCGA-CCTCTCTCT-CTCTTAGCCATGGCGAATCTTACCTTAGAGCTCAACA 116
Query 129 TTTACTCAGCAAAAGATCTTGAAAATGTCAACCTCATCACAAAAATGGACGTATACGCCG 188
| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 117 TCTACTCTGCAAAAGATCTTGAAAATGTCAACCTCATCACCAAAATGGATGTATACGCCG 176
Query 189 TCGTTTGGATCACCGGCGATGATTCTCGGAAGAATCATAAGGAGAAAACCCCCATCGATC 248
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 177 TCGTTTGGATCACCGGCGATGATTCTCAGAAGAATCATAAGGAGAAAACCCCTATCGATC 236
Query 249 GCACCGGAGAATCTGAGCCTACTTGGAATCACACCGTCAAATTTTCCGTTGATCAAAGGT 308
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCACCGGAGAATCTGAGCCCACTTGGAATCACACCGTCAAATTTTCCGTTGATCAAAGGT 296
Query 309 TAGCACACGAAGGTCGTTTAACCCTCGTCGTGAAATTGGTCTGCGATCGGATCTTCGGCG 368
|||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAGCCCTCGAAGGCCGTTTGACCCTCGTCGTGAAATTGGTCTGCGATCGGATCTTCGGCG 356
Query 369 ACAAAGATCTCGGAGAGGTCCAAGTCCCGGTTCTTGAGCTTCTTCATGGTTCTTCGTCGC 428
| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 357 ATAAAGATCTCGGAGAAGTCCAAGTCCCTGTTCTTGGGCTTCTTCATGGTTCTTCGTCGC 416
Query 429 CGTCA-TCTAACGGTGACGGTCAGGGGATGATGAGATTTGTTACGTATCAGGTCAGAACT 487
||||| | ||||||| ||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 417 CGTCAAT-TAACGGTAACGGTCAGGGGATGATGAGATTTGTGACGTATCAGGTGAAAACT 475
Query 488 CCGTTTGGAAAAGGTCAAGGCTCGTTGACTTTTTCGTACCGGTTCGATTCACCGACATTT 547
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | |||
Sbjct 476 CCGTTTGGGAAAGGTCAAGGCTCGTTGACTTTTTCGTACCGGTTCGATACGCCGTCGTTT 535
Query 548 AAACCGGATCAACCGGTTTCATCAC 572
||||||||| ||||| |||||||
Sbjct 536 AAACCGGATTTACCGGCATCATCAC 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5