BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16530.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479116 jgi|Araly1|479116|fgenesh2_kg.3__1817__AT3G16530.1 1489 0.0
Ahg478968 jgi|Araly1|478968|fgenesh2_kg.3__1669__AT3G15356.1 1081 0.0
> Ahg479116 jgi|Araly1|479116|fgenesh2_kg.3__1817__AT3G16530.1
Length=1007
Score = 1489 bits (806), Expect = 0.0
Identities = 873/904 (97%), Gaps = 9/904 (1%)
Strand=Plus/Plus
Query 1 ATCATCAATCTTTCAATCacaaaaaacaacaac-ac-----caaaaaaaaa-aCGCACAC 53
||||||||||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct 1 ATCATCAATCTTTCAATCACAAAAAACAACAACAACATTAAAAAAAAAAAACACTCACAC 60
Query 54 AATGCAGATTCACAAACTCTGTTTTCTTGTTCTGTTCTTAGCTAACGCAGCTTTTGCCGT 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGCAGATTCACAAACTCTGTTTTCTTGTTCTGTTCTTAGCTAACGCAGCTTTTGCCGT 120
Query 114 CAAATTCAACTTC-GATTCCTTCGATGGCAGCAACTTGTTATTCCTAGGAGACGCAGAGC 172
||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 121 CAAATTCAACTTCAGA-TCCTTCGATGGCAACAACTTGCTATTCCTAGGAGACGCAGAGC 179
Query 173 TTGGTCCTTCCTCTGATGGTGTAAGCCGATCCGGAGCTTTATCCATGACCCGAGACGAGA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGGTCCTTCCTCTGATGGTGTAAGCCGATCCGGAGCTTTATCCATGACCCGAGACGAGA 239
Query 233 ACCCATTCTCTCATGGTCAAGGTCTTTACATCAATCAAATCCCATTCAAACCTTCAAACA 292
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCCATTCTCTCACGGTCAAGGTCTTTACATCAATCAAATCCCATTCAAACCTTCAAACA 299
Query 293 CTTCTTCTCCTTTTTCATTTGAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAAC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCTTCTCCTTTTTCATTTGAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAAC 359
Query 353 CTAACTCCGGTCAAGGTTTCGCCTTCATCATAACCCCGGAAGCTGATAACTCCGGTGCTT 412
||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 360 CTAACTCCGGTCAAGGTCTCGCCTTCATCATAGTCGCGGAAGCTGATAACTCCGGTGCTT 419
Query 413 CAGATGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAGAACCACA 472
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGGTGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAGAACCACA 479
Query 473 TCTTGGCTATCGAATTCGATACTTTTCAGAACAAAGAGTTTCTAGACATTAGTGGTAACC 532
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTGGCTATCGAATTCGATACTTTCCAGAACAAAGAGTTTCTAGACATTAGTGGTAACC 539
Query 533 ATGTTGGAGTTAACATCAACTCAATGACTTCTCTTGTCGCTGAGAAAGCTGGTTACTGGG 592
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGTCGGAGTTAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCTGGTTACTGGG 599
Query 593 TTCAGACAAGAGTCGGGAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTG 652
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCAGACAAGAGTCGGTAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTG 659
Query 653 GAGAGAGGTTCAAGGCTTGGGTTGAGTTCAGAAACAAAGACTCTACGATTACGGTTACAC 712
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 660 GAGAGAGGTTCAAGGCTTGGGTTGAGTTCAGAAGCAAAGACTCAACGATTACGGTTACGC 719
Query 713 TCGCGCCTGAAAACGTTAAGAAACCTAAGCGGGCTTTGATCGAAGCTCCCAGAGTGCTCA 772
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TCGCGCCTGAAAACGTTAAGAAACCTAAGAGGGCTTTGATCGAAGCTCCCAGAGTGCTCA 779
Query 773 ATGAAGTTCTTCTTCAAAACATGTACGCCGGTTTTGCTGGTTCCATGGGACGTGCCGTTG 832
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 780 ATGAAGTTCTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGGACGTGCAGTTG 839
Query 833 AGCGTCACGATATTTGGAGCTGGTCGTTTGAAAACGCCGCCAAAAACAACTAAACCGGTT 892
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGCGTCACGACATTTGGAGCTGGTCGTTTGAAAACGCCGCCAAAAACAACTAAACCGGTT 899
Query 893 TGGT 896
||||
Sbjct 900 TGGT 903
> Ahg478968 jgi|Araly1|478968|fgenesh2_kg.3__1669__AT3G15356.1
Length=1064
Score = 1081 bits (585), Expect = 0.0
Identities = 792/889 (89%), Gaps = 25/889 (3%)
Strand=Plus/Plus
Query 50 ACACAATGCAGATTCACAAACTCTGTTTTCTTGTTCTGTTCTTAGCTAACGCAGCTTTTG 109
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 47 ACACAATGCAGATTCACAAACTCTGTTTTCTTGCTCTGTTCTTAGCTAACGCAGTTTTTG 106
Query 110 CCGTCAAATTCAACTTCGATTCCTTCGATGGCAGCAACTTGTTATTCCTAGGAGACGCAG 169
|||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||| |
Sbjct 107 CCGTCAAATTTAACTTCAATTCTTTCGATGGCAACAACTTGTTATTCCTAGGAGACGCTG 166
Query 170 AGCTTGGTCCTTCCTCTGATGGTGTAAG-CCGATCCGGAGCTTTATCCATGACCCGAGAC 228
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 167 AGCTTGGTCCTTCCTCTGATGGCGT-AGAACGATCCGGAGCTTTATCCATGACCCGAGAC 225
Query 229 GAGAA-CCCATTCTCTCATGGTCAAGGTCTTTACATCAATCAAATCCCATTCAAACCTTC 287
| ||| |||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 226 G-GAACCCCATTCTCTCACGGTCAAGGTCTTTACATCAATCCAATCCAATTCAAATCTTC 284
Query 288 AAACACTTCTTCTCCTTTTTCATTTGAAACTTCTTTCACTTTCTCCATCACTCCTCGCAC 347
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 285 AAACACTTCTACTCCTTTTTCGTTTAAAACTTCTTTCACTTTCTCCATCACTCCTCGCAC 344
Query 348 CAAACCTAACTCCGGTCAAGG-TTTCGCCTTCATCATAACCCCGGAAGCTGATAACTCCG 406
||||||||| || |||||||| || ||||||||||| ||| | |||||||||||||
Sbjct 345 CAAACCTAATTCTGGTCAAGGCCTT-GCCTTCATCATTGTCCCAGCCGCTGATAACTCCG 403
Query 407 GTGCTTCAGATGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAGA 466
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 404 GCGCTTCAGGCGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAAA 463
Query 467 ACCACATCTTGGCTATCGAATTCGATACTTTTCAGAACAAAGAGTTTCT-A-GACATTAG 524
|| || || | ||||||||| || |||||||| ||||||||| ||| | ||||||||
Sbjct 464 ACAACCTCATATTTATCGAATTGGACACTTTTCAAAACAAAGAG--TCTAATGACATTAG 521
Query 525 TGGTAACCATGTTGGAGTTAACATCAACTCAATGACTTCTCTTGTCGCTGAGAAAGCTGG 584
|||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 522 TGGTAACCATGTCGGAATCAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCTGG 581
Query 585 TTACTGGGTTCAGACAAGAGTCGGGAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCT 644
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TTATTGGGTTCAGACATTAGTCGGGAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCT 641
Query 645 TAGCAGTGGAGAGAGGTTCAAGGCTTGGGTTGAGTTCAGAAACAAAGACTCTACGATTAC 704
||||||||||||||||||||||| |||| | |||||||||| ||||||||||| || |||
Sbjct 642 TAGCAGTGGAGAGAGGTTCAAGGTTTGGATCGAGTTCAGAAGCAAAGACTCTAGGAATAC 701
Query 705 GGTTAC-ACTCGCGCCTGAAAACGTTAAGAAACCTAAGCGGGCTTTGATCGAAGCTCCCA 763
| || | ||||||||||||||||||||||||| ||| || |||||||| ||| | | |
Sbjct 702 CATAACGA-TCGCGCCTGAAAACGTTAAGAAACCGAAGAGGCCTTTGATCCAAGGTTCGA 760
Query 764 GAGTGCTCAATGAAGTTCTTCTTCAAAACATGTACGCCGGTTTTGCTGGTTCCATGGGAC 823
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 761 GAGTACTCAATGATGTTCTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGGAC 820
Query 824 GTGCCGTTGAGCGTCACGATATTTGGAGCTGGTCGTTTGAAAACGCCGCCAAAAACAACT 883
|||||| |||||||||||| ||||||||||||||||| |||||| || | |
Sbjct 821 GTGCCGGTGAGCGTCACGACATTTGGAGCTGGTCGTTCGAAAACT-----AA---CGA-- 870
Query 884 AAACCGGTTTGGTTCTGTTTATAGGCTAAGTATCGtttgttttgttttt 932
|| |||||||||||| |||| | ||||| |||||||||| |||||||||
Sbjct 871 AA-CCGGTTTGGTTCGGTTT-T-GGCTAGGTATCGTTTGCTTTGTTTTT 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5