BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16540.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1 1086 0.0
Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1 857 0.0
Ahg925664 jgi|Araly1|925664|scaffold_201225.1 267 3e-70
Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077 115 1e-24
> Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1
Length=1485
Score = 1086 bits (588), Expect = 0.0
Identities = 719/777 (93%), Gaps = 30/777 (4%)
Strand=Plus/Plus
Query 922 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTTCAAGATGAGCCATGAAATGACAGGA 981
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 709 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTACAAGATGAGCCATGAAATGACAGGA 768
Query 982 ATTCTTATTAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 1041
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATTCTTATAAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 828
Query 1042 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 888
Query 1102 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 948
Query 1162 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAG--TAC-AATATCAGT-CTAAAA-C-CG 1215
|||||||||||||||||||||||||||||||| | | || |||| | | | || | |
Sbjct 949 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAAACTTCTAACATCAATGCCACAATCTCT 1008
Query 1216 -GT--GAA-ACCAAACTTTA--CAGTGCAAC-AAT-TTTA---T--AA---TGTT----- 1254
|| || | |||| || | ||||| ||| || |||| | || | ||
Sbjct 1009 CGTATGATTAGCAAAATTAATTCAGTGAAACCAAACTTTACAGTGCAACAATTTTATAAT 1068
Query 1255 C--C-AAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1311
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTTCCAAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1128
Query 1312 GATAGTGAACATCACCAAAGATTAGCAGATGACATCAACGAAGGATACCAAAGTTTATAT 1371
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1129 GATAGTGAACATCACCAAATATTAGCAGATGACATCAACGAAGGATACCAAAGTTTAGAT 1188
Query 1372 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTTAAGCATCTATGCGAG 1431
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1189 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTCAAGCATCTATGCGAG 1248
Query 1432 CTAATAGAGGAATGTAGCACCGAAGATTTGAGGCTGGAGTTTAAAAATCATAAGGTTTTG 1491
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1249 CTAATAGAGGAATGTAGCACTGAAGATTTGAGGCTGGACTTTAAAAATCATAAAGTTTTG 1308
Query 1492 GTCCTCAACTATGAATCTGCTAAAAAGGCAACGTTACAAATCTTGGAACGTCACAAAATA 1551
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1309 GTCCTCAACTATGAAACTGCTAAAAAAGCAACGTTACAAATCTTGGAACGTCACAAAATA 1368
Query 1552 AAGTCGGTCATATCAAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1611
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AAGTCGTTCATATCTAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1428
Query 1612 AATAAGATCAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1668
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AATACGATAAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1485
Score = 887 bits (480), Expect = 0.0
Identities = 596/648 (92%), Gaps = 24/648 (4%)
Strand=Plus/Plus
Query 1 ATGTTTTTCCGGCCGTGTGTTCATACGGTGGGCCGGTACTCGAGAGCTCGGGTTCCTGGT 60
||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGGTTTTCCGGCCGTGTGTTGATATGGTGGGGTGGTACACGAGAGCTCGGGTTCCTGGT 60
Query 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120
Query 121 ACGGTAACAACGGCCGGCCGAGTTTCCAGATACGGA-TATATATGCAGGAGGAGCAGCAC 179
||||||||||| |||||||||||||||||||| | | ||| ||||||||||||||| ||
Sbjct 121 ACGGTAACAACTGCCGGCCGAGTTTCCAGATATG-ACTATCTATGCAGGAGGAGCA-CA- 177
Query 180 ATCAGCAGCGGAGAGGGGTGT-GTTTCTTCCATTTGCGTTAACTTGCCGAAGAAATATCC 238
|||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| ||||
Sbjct 178 -TCAGCAGCAGAGAGGGGTGTAGTT-CTTCCATTTGCGTTAACTGGCCGAAGAAAGATCC 235
Query 239 ACTCAATACATGAAGATGAGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCATC 298
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 236 ATTCAATACATGAAGATGCGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCGTC 295
Query 299 CTCTTGATGAATTGGTGCTGGATTCGGTTGTAAAGGTATTCTCTAACTCTACCGAGTATA 358
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 296 CTGTTGATGAATTGGTGCTGGATTCGGTTGTAGAGGTATTCTCTGACTCTACCGGGTATA 355
Query 359 GCAAATCCAAACCTTGGAAGACTC-TTGACCA-AAA-ATC-A--TC--C---AG-G---G 403
| ||||||||||||||| ||||| || || | ||| | | | | | || | |
Sbjct 356 GAAAATCCAAACCTTGGCAGACTTGTT-ACAAGAAAGAGCGAGATAAGCTTGAGAGAAAG 414
Query 404 G-CACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 415 GGCACTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 474
Query 463 ATGAATGATCACACATTCGTGGACGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 522
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGAATGATCACACATTCGTGGATGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 534
Query 523 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 594
Query 583 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 630
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 642
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 782 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 812
|||||||||||||||||||||||||||||||
Sbjct 642 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 672
> Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1
Length=1503
Score = 857 bits (464), Expect = 0.0
Identities = 941/1158 (81%), Gaps = 86/1158 (7%)
Strand=Plus/Plus
Query 203 TTCTTCCATTTGCGTTAACTTGCCGAAGAAATATCCACTCAATACATGAAGATGAGAAGA 262
||||||| ||||| |||||| || ||||||| ||||| | | |||| || | || |
Sbjct 68 TTCTTCCGTTTGCATTAACTCGCGGAAGAAAGATCCA-T--A-CCATGTCGAAG-GATG- 121
Query 263 AGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCATCCTC-TTGATGAATTGGTGCTGGAT 321
|| ||| ||||||||||||||||| |||||| ||| | ||||||||||| |||||||
Sbjct 122 AG---GAATGGTGGAAGAAAATAGAAAAAAGTCCTCC-CGTTGATGAATTGATGCTGGAG 177
Query 322 TCGGTTGTAAAGGTATTCTCTAACTCTACCGAGTATAGCAAA-TCCAAACCTTGGAAGAC 380
||||| ||| |||| ||| || |||||||||||||||||||| | |||||||||| ||||
Sbjct 178 TCGGTGGTAGAGGTCTTCACTGACTCTACCGAGTATAGCAAAGT-CAAACCTTGGCAGAC 236
Query 381 TCTTGACCAAAAATCATCCAGGGGCACTGGATTTGCAATCGCCGGAAGGAAAATTCTTAC 440
|||| ||||| |||||| ||||| |||||||||||||||| |||| ||||||||||||
Sbjct 237 TCTTAACCAAGAATCATATGGGGGCTCTGGATTTGCAATCGCGGGAAAGAAAATTCTTAC 296
Query 441 GAACGCTCATGTGGT-GATGGCTATGAATGATCACACATTCGTGGACGTCAAAAGACATG 499
||||||||||||||| || || ||||||||||||||||||||| |||| ||||||||||
Sbjct 297 GAACGCTCATGTGGTGGA-GGGGATGAATGATCACACATTCGTGCACGTGAAAAGACATG 355
Query 500 GCTCTCAAATCAAATACAAAGCAAAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCA 559
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 356 GCTCTCAAGTCAAATACAAAGCAAAAGTTCAAAAGATTGCACATGAGTGTGATTTGGCCA 415
Query 560 TCTTGGAGATCGATAGTGACGAGTTTTGGAAGGGTATGAATCCCTTGGAGCTT-GGAGAC 618
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 416 TCTTGGAGATCGATAGCGACGAGTTTTGGAAGGGTATGAATCCCTTGGAG-TTCGGAGAC 474
Query 619 ATACCACCTCTCCAA-GAAGTTGTGTCCGTTGTTGGT------G--G-TGA--AAATA-T 665
||||| |||||| || ||| |||| | ||||||||| | | || ||| | |
Sbjct 475 ATACCGCCTCTC-AATGAAATTGTATATGTTGTTGGTTATCCAGAAGCTGGTGAAACAAT 533
Query 666 CTGCATTACAAAAGGTCTAGTA-CTTAGAGTTGAAACTAGAATAT-ACGATT-ACAGTGA 722
||| ||||||||||| | ||| || ||||| ||||| ||| || || || | |||
Sbjct 534 ATGCGTTACAAAAGGTGTTGTAACTG-GAGTTAAAACTGGAA-ATTACC-TTCAAAGTTC 590
Query 723 CAGTGATCTGCT-ATCAATACAGATTGATGCAACTATCAACGATGAAAATAGTGGTGGCC 781
|| | | || || | ||||||| ||||| ||||||| |||||||| ||||||||||||||
Sbjct 591 CACTAAACTACTGA-CAATACAAATTGACGCAACTACCAACGATGGAAATAGTGGTGGCC 649
Query 782 CGGTGATTATGGGAAACAAAGTCGTTGGTGTGGTATAT---GA------A-AT-AG---- 826
|||| |||| |||||||||||||||||||| |||| | || | || ||
Sbjct 650 CGGTTATTACAGGAAACAAAGTCGTTGGTGTAGTATTTCAAGATCTTGGAGATGAGAAAA 709
Query 827 GTTT---TGT-G-A-TCCCAACTCCAATAATTA-AGCATTTCATAACTAGTGTTCAAGAG 879
|| ||| | | ||||||| |||||||||| | |||||||||||| ||| ||||
Sbjct 710 GTACAGGTGTCGTAATCCCAACCCCAATAATTAGA-CATTTCATAACTGGTGCAGAAGAA 768
Query 880 AGCAGACAATATT-CTTGTTT-CGGCTCATTGGATCTTTCATATCAATCTCTCGAAAATG 937
||| || || || |||| ||||||| | | ||| |||| ||| || | |||||||
Sbjct 769 AGCTCCCA-TAACGCT-GTTTTCGGCTCACTAGTTCTATCATGTCAGTCAATGGAAAATG 826
Query 938 TTCAAATCCGTAATCATTTCAAGATGAGCCATGAAATGACAGGAATTCTTATTAACAAAA 997
|||||| ||||||||||| |||||||||| ||||| ||||||||||||||| |||||||
Sbjct 827 CTCAAATTCGTAATCATTTTAAGATGAGCCCTGAAACGACAGGAATTCTTATAAACAAAA 886
Query 998 TAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGACATTATTCTTGCAATTG 1057
||||||| |||||||||||| |||||||| |||||||||| ||||| ||||| |||||||
Sbjct 887 TAAACTCATCGTCGGGGGCTCACAAAATTCTGAGAAAAGATGACATCATTCTCGCAATTG 946
Query 1058 ATGGTGTTCCAATAGGAAATGATGAGAA-A-GTTCCTTTCCAAAACAAAAGA-CGGATA- 1113
||||||||||||||||||||||||| || | || ||||| | ||| | || || |||
Sbjct 947 ATGGTGTTCCAATAGGAAATGATGA-AACATGT-CCTTTTCGAAATGAG-GAACGAATAA 1003
Query 1114 GATTTCAG-CTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTAGTTAAAGTTT- 1171
| ||||| | | || |||||||||||||||||| ||||||| |||||| |||| ||
Sbjct 1004 G-TTTCAATC-ATTTTATTTCTATGAAGAAACCAGATGAAAAAATCTTAGT-AAAGGTTC 1060
Query 1172 TACGAAACGGAAAAGAGTATGAGTACAATATCAGTCTAAAACCGGT--G--AAACCAAAC 1227
|| | || ||||||||| |||| |||||||||||| |||| ||||| | |||||| ||
Sbjct 1061 TAAGGAAGGGAAAAGAGCATGAATACAATATCAGTTTAAAGCCGGTAAGTGAAACCACAC 1120
Query 1228 TTTACA-GTGCAACAAT-TT-TATAATGTTCCAAGTTACTACATATTTGGGGGTTTTGTT 1284
| || |||||||||| || ||||| |||||||||| |||||||| || |||||||||
Sbjct 1121 ATG-CAAGTGCAACAATATTATATAACCTTCCAAGTTATTACATATTCGGTGGTTTTGTT 1179
Query 1285 TTTGTGCCTCTCACTAAA 1302
||||||||||||||||||
Sbjct 1180 TTTGTGCCTCTCACTAAA 1197
Score = 137 bits (74), Expect = 2e-31
Identities = 175/222 (79%), Gaps = 13/222 (6%)
Strand=Plus/Plus
Query 1337 CAGATGACATCAACGAAGGATACCA--AAGTTT-ATATGGTGCT-CAGGTGGAGAAAGTG 1392
|||||||||| ||| ||||||| || || ||| | | | | | |||||||| |||||
Sbjct 1289 CAGATGACATTAACAAAGGATA-CAGTAA-TTTCA-AAGAT-TTACAGGTGGAAAAAGTA 1344
Query 1393 AACGGAGTGGAAGTAAAGAATCTT-AAGCATC-TATGCGAGCTAATAGAGGAATGTAGCA 1450
||||||||| ||||||||||| || || || | || | || || ||||||| |||| |
Sbjct 1345 AACGGAGTGAAAGTAAAGAAT-TTAAAACA-CTTACGTGAACTGATAGAGGGATGTTGTG 1402
Query 1451 CCGAAGATTTGAGGCTGGAGTTTAAAAATCATAAGGTTTTGGTCCTCAACTATGAATCTG 1510
| ||||| ||||| |||| || ||||| | || ||| |||| ||||||||||||||||
Sbjct 1403 GCAAAGATCTGAGGTTGGACTTGGAAAATGACAAAGTTATGGTACTCAACTATGAATCTG 1462
Query 1511 CTAAAAAGGCAACGTTACAAATCTTGGAACGTCACAAAATAA 1552
|||||||||||| || | ||||||||||||||||| ||||
Sbjct 1463 CTAAAAAGGCAAATTTG-AGATCTTGGAACGTCACAATATAA 1503
> Ahg925664 jgi|Araly1|925664|scaffold_201225.1
Length=1533
Score = 267 bits (144), Expect = 3e-70
Identities = 713/971 (73%), Gaps = 106/971 (11%)
Strand=Plus/Plus
Query 409 GGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCTATGAAT 468
||||||| |||| | |||| || ||||||||||| |||||||| | |||| |
Sbjct 251 GGATTTGTAATCTCTGGAAATAAGATTCTTACGAATGCTCATGT--AG-TGGC------T 301
Query 469 GATCACACATTCGTGGACGTCA-AAAGACATGGCTCTCAAATCAAA-TACAAAGCAAAAG 526
|||||||| |||||| | || | |||| ||||| || | || |||| |||| ||||||||
Sbjct 302 GATCACACTTTCGTGCAAGTTAGAAAG-CATGGTTCACCAA-CAAAGTACACAGCAAAAG 359
Query 527 TTCAA-AAGATTTCACATGAATGTGATTTGGCCATCTTGG-AGATCGATAGTGACGAGTT 584
||||| | || |||||||||||||| || || |||| | ||| |||| | ||||
Sbjct 360 TTCAAGCA-ATGGGGCATGAATGTGATTTAGCGATTTTGGTA-ATCAATAGCAAAAAGTT 417
Query 585 TTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTCCA-A-G-AA--GT- 638
|||||||| |||||| |||||||| || |||||| || | |||||| | | | || ||
Sbjct 418 TTGGAAGGATATGAAGCCCTTGGACCTCGGAGACGTA-C-CCTCTCTATACGAAACTGTA 475
Query 639 TGTGTCCGTT-G-T----T---GGTGGTGAAAATATCTGCATTACAAAAGGTCTAGTACT 689
| ||| ||| | | | |||||||| || || | |||||| |||||| | || ||
Sbjct 476 TCTGT-TGTTGGATACCCTCAAGGTGGTGACAACATTTCCATTACCAAAGGTGTTGT-CT 533
Query 690 -TAGAGTTGAAACTAGAATATACGATTACAGTGACAG-TGATCT--GCT-AT--CAATAC 742
|||||||||| || | | | | || ||| |||| |||| ||| || ||| ||
Sbjct 534 CTAGAGTTGAAGTTA-CA-A-A-G--TATAGTCACAGCCAATCTAAGCTAATGACAACAC 587
Query 743 AGATTGATGCAACTATCAA-CGATGAAAATAGTGGTGGCCCGGTGATTATGGGAAACAAA 801
|||| ||||| |||| || | | | |||||| ||||| || ||||| |||| |||||||
Sbjct 588 AGATAGATGCGGCTATTAATCCA-GGAAATAGCGGTGGTCCAGTGATCATGGAAAACAAA 646
Query 802 GTCGTT-G-GT-G----T---GG----T-A---T-ATGAAAT--AGGTTTTGTGATCCCA 840
|||||| | || | | || | | | | |||| ||| | | ||||||
Sbjct 647 GTCGTTGGTGTAGCATTTCAAGGTCTTTCACGCTCACAAAATACAGGCTACATAATCCCA 706
Query 841 ACTCCAATAATTAAGCATTTCATAACTAGTGTTCAAGAGAGCAGACAATATTCTT--GTT 898
|||||| || |||| |||||| ||||||||||| |||| | | | |||| || || |||
Sbjct 707 ACTCCAGTAGTTAACCATTTCTTAACTAGTGTTGAAGAAAACGGTCAAT-TTGTTGGGTT 765
Query 899 TCGGCTCA-TTGGATCTTTCATATCAATC-TCTCGAAAATGTTCAAATCCGTAATCA-TT 955
| | ||| | || | | |||| || | | | | || ||| ||| ||||||| || ||
Sbjct 766 T-TGTTCACTAGG-TATATCATGTC-AGCATATGGAGAATACTCATTTCCGTAACCACTT 822
Query 956 TCAAGATGAGCCATGAAATGACAGGAATTCTTATTAA-CAAAATAAACTC-GTCGTCGGG 1013
| |||||| ||| | |||||||||| |||| | ||| |||||||| || ||||||| |
Sbjct 823 T-AAGATGGGCCCTAAAATGACAGGGATTC-GAATAAGAAAAATAAA-TCGGTCGTCGAG 879
Query 1014 GGCTTACAAAATTTTGAGAAAA-GACGACATTATTCTTGCAATTGATGGTGTTCCAATAG 1072
|||||||| ||| ||| |||| || |||||| |||| ||||||||||||||||| ||||
Sbjct 880 TGCTTACAATATTCTGA-AAAAGGATGACATTCTTCTCGCAATTGATGGTGTTCCTATAG 938
Query 1073 GAAATGATGAGAAAGTTCCTTTCCAAAACAAAAG-ACGGATAGATTTCAGCT-ACTTGGT 1130
||| ||||||| |||| ||| | || || | ||| ||| ||||||| | | |||||
Sbjct 939 AAAACGATGAGACAGTTATTTTTCGGAA-GAAGGAACGTATAAATTTCAG-TCATTTGGT 996
Query 1131 TTCTATGAAGAAACCAGGTGAAAAAGCCTTAGTTAAAGTTTTACGAAACGGAAA-AGAGT 1189
||||||||||||||||||||||||| | | | | ||||| ||| || | ||||| | |
Sbjct 997 TTCTATGAAGAAACCAGGTGAAAAAACGTCACTCAAAGTCTTAAGAGAGGGAAAGAAAC- 1055
Query 1190 ATGAGTACAATATCAGTCTAAAACCGGTGAAACCAA-ACTTTAC-AGTGCAACAATTTT- 1246
|||| | |||||||| | ||| ||| ||| || || ||| || ||| | || ||||
Sbjct 1056 ATGAATTCAATATCAATATAACACCTGTGGAATCACTACT--ACCAGTATATCA-TTTTG 1112
Query 1247 ATAATG-TTCCAAGTTACTACATATTTG-GGGGTTTTGTTTT-TGTGCCTCTCACTAAAA 1303
|||| | |||||||||| |||||||| | ||||||| || || | ||||||||||||||
Sbjct 1113 ATAA-GCTTCCAAGTTATTACATATTCGCGGGGTTT-GTCTTCT-TGCCTCTCACTAAAC 1169
Query 1304 CATATCTTGAT 1314
|||| || |||
Sbjct 1170 CATACCTCGAT 1180
> Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077
Length=1662
Score = 115 bits (62), Expect = 1e-24
Identities = 331/451 (73%), Gaps = 57/451 (13%)
Strand=Plus/Plus
Query 403 GGCACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462
||| |||| |||| |||| | |||| || ||||||||||| ||||| | || | | |
Sbjct 397 GGCTCTGGTTTTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCA--T-GT-A--G-T 449
Query 463 ATGAATGATCACACATTC-GTGGACGT-CAAAAGACATGG--CTCTCAAATCAAATACAA 518
| | |||||| ||| || || | || | |||| ||||| | | |||| || |||||
Sbjct 450 A-G-CTGATCAAACA-TCTGTTAAAGTCCGAAAG-CATGGTTCACCCAAA--AAGTACAA 503
Query 519 AGCAAAAGTTCAAAAGATT--TCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGT 576
||||||||||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 504 AGCAAAAGTTCAAGTGGTTGGTCAC--GAATGTGATTTGGCCATCTTGGAGATCGATAAC 561
Query 577 GACGAGTTTTGGAAGGGTATGAATCCC-TT-GGAGCTTGGAGACATACCACCTCTCCAA- 633
|| ||||||||| ||||| | | ||| || |||||| ||||||||||| | || ||||
Sbjct 562 GAAGAGTTTTGGGAGGGTCTTA--CCCATTTGGAGCTGGGAGACATACC-C-TC-CCAAA 616
Query 634 -GAAGT-TGTGTC---CGTTG--T-T---G--G-TGGTGAAAATATCTGCATTACAAAAG 679
| | | |||| | ||||| | | | | |||||| | ||| | | |||| |||
Sbjct 617 TGGATTCTGTGGCGGTCGTTGGCTATCCAGAAGGTGGTGATAGTATATCCGTTACGCAAG 676
Query 680 GTCTAGTA-CTTAGAGTTGAAACT-AGAATATACGATT-ACAG-TG-AC--AGTGATCTG 732
|| | || | ||||||| | || |||| |||| | | |||| | || ||| || ||
Sbjct 677 GTGTTGTGTCG-AGAGTTGTA-CTGAGAAGATAC-AGTCACAGCTCCACCGAGTTAT-TG 732
Query 733 CTATCAATACAGATTGATGCAACTATCAACGATGAAAATAGTGGTGGCCCGGTGATTATG 792
| |||||| || |||||| |||| ||| || ||||||||| || ||||| || |||
Sbjct 733 A-A--AATACAAATAGATGCAGCTATAAACTCTGGAAATAGTGGCGGTCCGGTAATCATG 789
Query 793 GGAAACAAAGTCGTTGGTGTGGTATATGAAA 823
||||||||||| |||||||| | || |||||
Sbjct 790 GGAAACAAAGTGGTTGGTGTAGCATTTGAAA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5