BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16540.1 Length=1668 Score E Sequences producing significant alignments: (Bits) Value Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1 1086 0.0 Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1 857 0.0 Ahg925664 jgi|Araly1|925664|scaffold_201225.1 267 3e-70 Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077 115 1e-24 > Ahg479117 jgi|Araly1|479117|fgenesh2_kg.3__1818__AT3G16540.1 Length=1485 Score = 1086 bits (588), Expect = 0.0 Identities = 719/777 (93%), Gaps = 30/777 (4%) Strand=Plus/Plus Query 922 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTTCAAGATGAGCCATGAAATGACAGGA 981 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 709 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTACAAGATGAGCCATGAAATGACAGGA 768 Query 982 ATTCTTATTAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 1041 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 ATTCTTATAAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 828 Query 1042 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 1101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 888 Query 1102 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 1161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 948 Query 1162 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAG--TAC-AATATCAGT-CTAAAA-C-CG 1215 |||||||||||||||||||||||||||||||| | | || |||| | | | || | | Sbjct 949 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAAACTTCTAACATCAATGCCACAATCTCT 1008 Query 1216 -GT--GAA-ACCAAACTTTA--CAGTGCAAC-AAT-TTTA---T--AA---TGTT----- 1254 || || | |||| || | ||||| ||| || |||| | || | || Sbjct 1009 CGTATGATTAGCAAAATTAATTCAGTGAAACCAAACTTTACAGTGCAACAATTTTATAAT 1068 Query 1255 C--C-AAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1311 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 CTTCCAAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1128 Query 1312 GATAGTGAACATCACCAAAGATTAGCAGATGACATCAACGAAGGATACCAAAGTTTATAT 1371 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1129 GATAGTGAACATCACCAAATATTAGCAGATGACATCAACGAAGGATACCAAAGTTTAGAT 1188 Query 1372 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTTAAGCATCTATGCGAG 1431 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1189 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTCAAGCATCTATGCGAG 1248 Query 1432 CTAATAGAGGAATGTAGCACCGAAGATTTGAGGCTGGAGTTTAAAAATCATAAGGTTTTG 1491 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 1249 CTAATAGAGGAATGTAGCACTGAAGATTTGAGGCTGGACTTTAAAAATCATAAAGTTTTG 1308 Query 1492 GTCCTCAACTATGAATCTGCTAAAAAGGCAACGTTACAAATCTTGGAACGTCACAAAATA 1551 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1309 GTCCTCAACTATGAAACTGCTAAAAAAGCAACGTTACAAATCTTGGAACGTCACAAAATA 1368 Query 1552 AAGTCGGTCATATCAAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1611 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1369 AAGTCGTTCATATCTAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1428 Query 1612 AATAAGATCAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1668 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1429 AATACGATAAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1485 Score = 887 bits (480), Expect = 0.0 Identities = 596/648 (92%), Gaps = 24/648 (4%) Strand=Plus/Plus Query 1 ATGTTTTTCCGGCCGTGTGTTCATACGGTGGGCCGGTACTCGAGAGCTCGGGTTCCTGGT 60 ||| ||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||| Sbjct 1 ATGGTTTTCCGGCCGTGTGTTGATATGGTGGGGTGGTACACGAGAGCTCGGGTTCCTGGT 60 Query 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120 Query 121 ACGGTAACAACGGCCGGCCGAGTTTCCAGATACGGA-TATATATGCAGGAGGAGCAGCAC 179 ||||||||||| |||||||||||||||||||| | | ||| ||||||||||||||| || Sbjct 121 ACGGTAACAACTGCCGGCCGAGTTTCCAGATATG-ACTATCTATGCAGGAGGAGCA-CA- 177 Query 180 ATCAGCAGCGGAGAGGGGTGT-GTTTCTTCCATTTGCGTTAACTTGCCGAAGAAATATCC 238 |||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| |||| Sbjct 178 -TCAGCAGCAGAGAGGGGTGTAGTT-CTTCCATTTGCGTTAACTGGCCGAAGAAAGATCC 235 Query 239 ACTCAATACATGAAGATGAGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCATC 298 | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 236 ATTCAATACATGAAGATGCGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCGTC 295 Query 299 CTCTTGATGAATTGGTGCTGGATTCGGTTGTAAAGGTATTCTCTAACTCTACCGAGTATA 358 || ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| Sbjct 296 CTGTTGATGAATTGGTGCTGGATTCGGTTGTAGAGGTATTCTCTGACTCTACCGGGTATA 355 Query 359 GCAAATCCAAACCTTGGAAGACTC-TTGACCA-AAA-ATC-A--TC--C---AG-G---G 403 | ||||||||||||||| ||||| || || | ||| | | | | | || | | Sbjct 356 GAAAATCCAAACCTTGGCAGACTTGTT-ACAAGAAAGAGCGAGATAAGCTTGAGAGAAAG 414 Query 404 G-CACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462 | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 415 GGCACTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 474 Query 463 ATGAATGATCACACATTCGTGGACGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 522 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 475 ATGAATGATCACACATTCGTGGATGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 534 Query 523 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 594 Query 583 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 630 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 642 Score = 58.4 bits (31), Expect = 2e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 782 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 812 ||||||||||||||||||||||||||||||| Sbjct 642 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 672 > Ahg479118 jgi|Araly1|479118|fgenesh2_kg.3__1819__AT3G16550.1 Length=1503 Score = 857 bits (464), Expect = 0.0 Identities = 941/1158 (81%), Gaps = 86/1158 (7%) Strand=Plus/Plus Query 203 TTCTTCCATTTGCGTTAACTTGCCGAAGAAATATCCACTCAATACATGAAGATGAGAAGA 262 ||||||| ||||| |||||| || ||||||| ||||| | | |||| || | || | Sbjct 68 TTCTTCCGTTTGCATTAACTCGCGGAAGAAAGATCCA-T--A-CCATGTCGAAG-GATG- 121 Query 263 AGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCATCCTC-TTGATGAATTGGTGCTGGAT 321 || ||| ||||||||||||||||| |||||| ||| | ||||||||||| ||||||| Sbjct 122 AG---GAATGGTGGAAGAAAATAGAAAAAAGTCCTCC-CGTTGATGAATTGATGCTGGAG 177 Query 322 TCGGTTGTAAAGGTATTCTCTAACTCTACCGAGTATAGCAAA-TCCAAACCTTGGAAGAC 380 ||||| ||| |||| ||| || |||||||||||||||||||| | |||||||||| |||| Sbjct 178 TCGGTGGTAGAGGTCTTCACTGACTCTACCGAGTATAGCAAAGT-CAAACCTTGGCAGAC 236 Query 381 TCTTGACCAAAAATCATCCAGGGGCACTGGATTTGCAATCGCCGGAAGGAAAATTCTTAC 440 |||| ||||| |||||| ||||| |||||||||||||||| |||| |||||||||||| Sbjct 237 TCTTAACCAAGAATCATATGGGGGCTCTGGATTTGCAATCGCGGGAAAGAAAATTCTTAC 296 Query 441 GAACGCTCATGTGGT-GATGGCTATGAATGATCACACATTCGTGGACGTCAAAAGACATG 499 ||||||||||||||| || || ||||||||||||||||||||| |||| |||||||||| Sbjct 297 GAACGCTCATGTGGTGGA-GGGGATGAATGATCACACATTCGTGCACGTGAAAAGACATG 355 Query 500 GCTCTCAAATCAAATACAAAGCAAAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCA 559 |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 356 GCTCTCAAGTCAAATACAAAGCAAAAGTTCAAAAGATTGCACATGAGTGTGATTTGGCCA 415 Query 560 TCTTGGAGATCGATAGTGACGAGTTTTGGAAGGGTATGAATCCCTTGGAGCTT-GGAGAC 618 |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| Sbjct 416 TCTTGGAGATCGATAGCGACGAGTTTTGGAAGGGTATGAATCCCTTGGAG-TTCGGAGAC 474 Query 619 ATACCACCTCTCCAA-GAAGTTGTGTCCGTTGTTGGT------G--G-TGA--AAATA-T 665 ||||| |||||| || ||| |||| | ||||||||| | | || ||| | | Sbjct 475 ATACCGCCTCTC-AATGAAATTGTATATGTTGTTGGTTATCCAGAAGCTGGTGAAACAAT 533 Query 666 CTGCATTACAAAAGGTCTAGTA-CTTAGAGTTGAAACTAGAATAT-ACGATT-ACAGTGA 722 ||| ||||||||||| | ||| || ||||| ||||| ||| || || || | ||| Sbjct 534 ATGCGTTACAAAAGGTGTTGTAACTG-GAGTTAAAACTGGAA-ATTACC-TTCAAAGTTC 590 Query 723 CAGTGATCTGCT-ATCAATACAGATTGATGCAACTATCAACGATGAAAATAGTGGTGGCC 781 || | | || || | ||||||| ||||| ||||||| |||||||| |||||||||||||| Sbjct 591 CACTAAACTACTGA-CAATACAAATTGACGCAACTACCAACGATGGAAATAGTGGTGGCC 649 Query 782 CGGTGATTATGGGAAACAAAGTCGTTGGTGTGGTATAT---GA------A-AT-AG---- 826 |||| |||| |||||||||||||||||||| |||| | || | || || Sbjct 650 CGGTTATTACAGGAAACAAAGTCGTTGGTGTAGTATTTCAAGATCTTGGAGATGAGAAAA 709 Query 827 GTTT---TGT-G-A-TCCCAACTCCAATAATTA-AGCATTTCATAACTAGTGTTCAAGAG 879 || ||| | | ||||||| |||||||||| | |||||||||||| ||| |||| Sbjct 710 GTACAGGTGTCGTAATCCCAACCCCAATAATTAGA-CATTTCATAACTGGTGCAGAAGAA 768 Query 880 AGCAGACAATATT-CTTGTTT-CGGCTCATTGGATCTTTCATATCAATCTCTCGAAAATG 937 ||| || || || |||| ||||||| | | ||| |||| ||| || | ||||||| Sbjct 769 AGCTCCCA-TAACGCT-GTTTTCGGCTCACTAGTTCTATCATGTCAGTCAATGGAAAATG 826 Query 938 TTCAAATCCGTAATCATTTCAAGATGAGCCATGAAATGACAGGAATTCTTATTAACAAAA 997 |||||| ||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| Sbjct 827 CTCAAATTCGTAATCATTTTAAGATGAGCCCTGAAACGACAGGAATTCTTATAAACAAAA 886 Query 998 TAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGACATTATTCTTGCAATTG 1057 ||||||| |||||||||||| |||||||| |||||||||| ||||| ||||| ||||||| Sbjct 887 TAAACTCATCGTCGGGGGCTCACAAAATTCTGAGAAAAGATGACATCATTCTCGCAATTG 946 Query 1058 ATGGTGTTCCAATAGGAAATGATGAGAA-A-GTTCCTTTCCAAAACAAAAGA-CGGATA- 1113 ||||||||||||||||||||||||| || | || ||||| | ||| | || || ||| Sbjct 947 ATGGTGTTCCAATAGGAAATGATGA-AACATGT-CCTTTTCGAAATGAG-GAACGAATAA 1003 Query 1114 GATTTCAG-CTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTAGTTAAAGTTT- 1171 | ||||| | | || |||||||||||||||||| ||||||| |||||| |||| || Sbjct 1004 G-TTTCAATC-ATTTTATTTCTATGAAGAAACCAGATGAAAAAATCTTAGT-AAAGGTTC 1060 Query 1172 TACGAAACGGAAAAGAGTATGAGTACAATATCAGTCTAAAACCGGT--G--AAACCAAAC 1227 || | || ||||||||| |||| |||||||||||| |||| ||||| | |||||| || Sbjct 1061 TAAGGAAGGGAAAAGAGCATGAATACAATATCAGTTTAAAGCCGGTAAGTGAAACCACAC 1120 Query 1228 TTTACA-GTGCAACAAT-TT-TATAATGTTCCAAGTTACTACATATTTGGGGGTTTTGTT 1284 | || |||||||||| || ||||| |||||||||| |||||||| || ||||||||| Sbjct 1121 ATG-CAAGTGCAACAATATTATATAACCTTCCAAGTTATTACATATTCGGTGGTTTTGTT 1179 Query 1285 TTTGTGCCTCTCACTAAA 1302 |||||||||||||||||| Sbjct 1180 TTTGTGCCTCTCACTAAA 1197 Score = 137 bits (74), Expect = 2e-31 Identities = 175/222 (79%), Gaps = 13/222 (6%) Strand=Plus/Plus Query 1337 CAGATGACATCAACGAAGGATACCA--AAGTTT-ATATGGTGCT-CAGGTGGAGAAAGTG 1392 |||||||||| ||| ||||||| || || ||| | | | | | |||||||| ||||| Sbjct 1289 CAGATGACATTAACAAAGGATA-CAGTAA-TTTCA-AAGAT-TTACAGGTGGAAAAAGTA 1344 Query 1393 AACGGAGTGGAAGTAAAGAATCTT-AAGCATC-TATGCGAGCTAATAGAGGAATGTAGCA 1450 ||||||||| ||||||||||| || || || | || | || || ||||||| |||| | Sbjct 1345 AACGGAGTGAAAGTAAAGAAT-TTAAAACA-CTTACGTGAACTGATAGAGGGATGTTGTG 1402 Query 1451 CCGAAGATTTGAGGCTGGAGTTTAAAAATCATAAGGTTTTGGTCCTCAACTATGAATCTG 1510 | ||||| ||||| |||| || ||||| | || ||| |||| |||||||||||||||| Sbjct 1403 GCAAAGATCTGAGGTTGGACTTGGAAAATGACAAAGTTATGGTACTCAACTATGAATCTG 1462 Query 1511 CTAAAAAGGCAACGTTACAAATCTTGGAACGTCACAAAATAA 1552 |||||||||||| || | ||||||||||||||||| |||| Sbjct 1463 CTAAAAAGGCAAATTTG-AGATCTTGGAACGTCACAATATAA 1503 > Ahg925664 jgi|Araly1|925664|scaffold_201225.1 Length=1533 Score = 267 bits (144), Expect = 3e-70 Identities = 713/971 (73%), Gaps = 106/971 (11%) Strand=Plus/Plus Query 409 GGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCTATGAAT 468 ||||||| |||| | |||| || ||||||||||| |||||||| | |||| | Sbjct 251 GGATTTGTAATCTCTGGAAATAAGATTCTTACGAATGCTCATGT--AG-TGGC------T 301 Query 469 GATCACACATTCGTGGACGTCA-AAAGACATGGCTCTCAAATCAAA-TACAAAGCAAAAG 526 |||||||| |||||| | || | |||| ||||| || | || |||| |||| |||||||| Sbjct 302 GATCACACTTTCGTGCAAGTTAGAAAG-CATGGTTCACCAA-CAAAGTACACAGCAAAAG 359 Query 527 TTCAA-AAGATTTCACATGAATGTGATTTGGCCATCTTGG-AGATCGATAGTGACGAGTT 584 ||||| | || |||||||||||||| || || |||| | ||| |||| | |||| Sbjct 360 TTCAAGCA-ATGGGGCATGAATGTGATTTAGCGATTTTGGTA-ATCAATAGCAAAAAGTT 417 Query 585 TTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTCCA-A-G-AA--GT- 638 |||||||| |||||| |||||||| || |||||| || | |||||| | | | || || Sbjct 418 TTGGAAGGATATGAAGCCCTTGGACCTCGGAGACGTA-C-CCTCTCTATACGAAACTGTA 475 Query 639 TGTGTCCGTT-G-T----T---GGTGGTGAAAATATCTGCATTACAAAAGGTCTAGTACT 689 | ||| ||| | | | |||||||| || || | |||||| |||||| | || || Sbjct 476 TCTGT-TGTTGGATACCCTCAAGGTGGTGACAACATTTCCATTACCAAAGGTGTTGT-CT 533 Query 690 -TAGAGTTGAAACTAGAATATACGATTACAGTGACAG-TGATCT--GCT-AT--CAATAC 742 |||||||||| || | | | | || ||| |||| |||| ||| || ||| || Sbjct 534 CTAGAGTTGAAGTTA-CA-A-A-G--TATAGTCACAGCCAATCTAAGCTAATGACAACAC 587 Query 743 AGATTGATGCAACTATCAA-CGATGAAAATAGTGGTGGCCCGGTGATTATGGGAAACAAA 801 |||| ||||| |||| || | | | |||||| ||||| || ||||| |||| ||||||| Sbjct 588 AGATAGATGCGGCTATTAATCCA-GGAAATAGCGGTGGTCCAGTGATCATGGAAAACAAA 646 Query 802 GTCGTT-G-GT-G----T---GG----T-A---T-ATGAAAT--AGGTTTTGTGATCCCA 840 |||||| | || | | || | | | | |||| ||| | | |||||| Sbjct 647 GTCGTTGGTGTAGCATTTCAAGGTCTTTCACGCTCACAAAATACAGGCTACATAATCCCA 706 Query 841 ACTCCAATAATTAAGCATTTCATAACTAGTGTTCAAGAGAGCAGACAATATTCTT--GTT 898 |||||| || |||| |||||| ||||||||||| |||| | | | |||| || || ||| Sbjct 707 ACTCCAGTAGTTAACCATTTCTTAACTAGTGTTGAAGAAAACGGTCAAT-TTGTTGGGTT 765 Query 899 TCGGCTCA-TTGGATCTTTCATATCAATC-TCTCGAAAATGTTCAAATCCGTAATCA-TT 955 | | ||| | || | | |||| || | | | | || ||| ||| ||||||| || || Sbjct 766 T-TGTTCACTAGG-TATATCATGTC-AGCATATGGAGAATACTCATTTCCGTAACCACTT 822 Query 956 TCAAGATGAGCCATGAAATGACAGGAATTCTTATTAA-CAAAATAAACTC-GTCGTCGGG 1013 | |||||| ||| | |||||||||| |||| | ||| |||||||| || ||||||| | Sbjct 823 T-AAGATGGGCCCTAAAATGACAGGGATTC-GAATAAGAAAAATAAA-TCGGTCGTCGAG 879 Query 1014 GGCTTACAAAATTTTGAGAAAA-GACGACATTATTCTTGCAATTGATGGTGTTCCAATAG 1072 |||||||| ||| ||| |||| || |||||| |||| ||||||||||||||||| |||| Sbjct 880 TGCTTACAATATTCTGA-AAAAGGATGACATTCTTCTCGCAATTGATGGTGTTCCTATAG 938 Query 1073 GAAATGATGAGAAAGTTCCTTTCCAAAACAAAAG-ACGGATAGATTTCAGCT-ACTTGGT 1130 ||| ||||||| |||| ||| | || || | ||| ||| ||||||| | | ||||| Sbjct 939 AAAACGATGAGACAGTTATTTTTCGGAA-GAAGGAACGTATAAATTTCAG-TCATTTGGT 996 Query 1131 TTCTATGAAGAAACCAGGTGAAAAAGCCTTAGTTAAAGTTTTACGAAACGGAAA-AGAGT 1189 ||||||||||||||||||||||||| | | | | ||||| ||| || | ||||| | | Sbjct 997 TTCTATGAAGAAACCAGGTGAAAAAACGTCACTCAAAGTCTTAAGAGAGGGAAAGAAAC- 1055 Query 1190 ATGAGTACAATATCAGTCTAAAACCGGTGAAACCAA-ACTTTAC-AGTGCAACAATTTT- 1246 |||| | |||||||| | ||| ||| ||| || || ||| || ||| | || |||| Sbjct 1056 ATGAATTCAATATCAATATAACACCTGTGGAATCACTACT--ACCAGTATATCA-TTTTG 1112 Query 1247 ATAATG-TTCCAAGTTACTACATATTTG-GGGGTTTTGTTTT-TGTGCCTCTCACTAAAA 1303 |||| | |||||||||| |||||||| | ||||||| || || | |||||||||||||| Sbjct 1113 ATAA-GCTTCCAAGTTATTACATATTCGCGGGGTTT-GTCTTCT-TGCCTCTCACTAAAC 1169 Query 1304 CATATCTTGAT 1314 |||| || ||| Sbjct 1170 CATACCTCGAT 1180 > Ahg907996 jgi|Araly1|907996|Al_scaffold_0002_1077 Length=1662 Score = 115 bits (62), Expect = 1e-24 Identities = 331/451 (73%), Gaps = 57/451 (13%) Strand=Plus/Plus Query 403 GGCACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462 ||| |||| |||| |||| | |||| || ||||||||||| ||||| | || | | | Sbjct 397 GGCTCTGGTTTTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCA--T-GT-A--G-T 449 Query 463 ATGAATGATCACACATTC-GTGGACGT-CAAAAGACATGG--CTCTCAAATCAAATACAA 518 | | |||||| ||| || || | || | |||| ||||| | | |||| || ||||| Sbjct 450 A-G-CTGATCAAACA-TCTGTTAAAGTCCGAAAG-CATGGTTCACCCAAA--AAGTACAA 503 Query 519 AGCAAAAGTTCAAAAGATT--TCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGT 576 ||||||||||||| | || |||| ||||||||||||||||||||||||||||||| Sbjct 504 AGCAAAAGTTCAAGTGGTTGGTCAC--GAATGTGATTTGGCCATCTTGGAGATCGATAAC 561 Query 577 GACGAGTTTTGGAAGGGTATGAATCCC-TT-GGAGCTTGGAGACATACCACCTCTCCAA- 633 || ||||||||| ||||| | | ||| || |||||| ||||||||||| | || |||| Sbjct 562 GAAGAGTTTTGGGAGGGTCTTA--CCCATTTGGAGCTGGGAGACATACC-C-TC-CCAAA 616 Query 634 -GAAGT-TGTGTC---CGTTG--T-T---G--G-TGGTGAAAATATCTGCATTACAAAAG 679 | | | |||| | ||||| | | | | |||||| | ||| | | |||| ||| Sbjct 617 TGGATTCTGTGGCGGTCGTTGGCTATCCAGAAGGTGGTGATAGTATATCCGTTACGCAAG 676 Query 680 GTCTAGTA-CTTAGAGTTGAAACT-AGAATATACGATT-ACAG-TG-AC--AGTGATCTG 732 || | || | ||||||| | || |||| |||| | | |||| | || ||| || || Sbjct 677 GTGTTGTGTCG-AGAGTTGTA-CTGAGAAGATAC-AGTCACAGCTCCACCGAGTTAT-TG 732 Query 733 CTATCAATACAGATTGATGCAACTATCAACGATGAAAATAGTGGTGGCCCGGTGATTATG 792 | |||||| || |||||| |||| ||| || ||||||||| || ||||| || ||| Sbjct 733 A-A--AATACAAATAGATGCAGCTATAAACTCTGGAAATAGTGGCGGTCCGGTAATCATG 789 Query 793 GGAAACAAAGTCGTTGGTGTGGTATATGAAA 823 ||||||||||| |||||||| | || ||||| Sbjct 790 GGAAACAAAGTGGTTGGTGTAGCATTTGAAA 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62544182290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5