BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16555.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929484 jgi|Araly1|929484|scaffold_301941.1 512 2e-144
Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518 499 1e-140
Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1 459 2e-128
Ahg929444 jgi|Araly1|929444|scaffold_301901.1 429 2e-119
Ahg929442 jgi|Araly1|929442|scaffold_301899.1 429 2e-119
Ahg925882 jgi|Araly1|925882|scaffold_201443.1 193 3e-48
Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003 143 3e-33
> Ahg929484 jgi|Araly1|929484|scaffold_301941.1
Length=1133
Score = 512 bits (277), Expect = 2e-144
Identities = 507/615 (82%), Gaps = 27/615 (4%)
Strand=Plus/Plus
Query 454 GTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTTTATTGATACTTCTAACAAGGTC 513
|||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||| ||| |
Sbjct 460 GTTGCGATATACGATTGTACCTCTCAAGCGTTCAAGTTTATTGATACACCTAACGAGGAC 519
Query 514 TGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTTGAACGGAAATCTCTATTGG--- 570
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 520 TGGTCCATAACCGATGTTCAACGATCCAGTGTGTCCTTGAACGGAAATCTCTATTGGATT 579
Query 571 ----CT-TT--C-T----TTTGA------TGACTTTCGCATCCTATGCTTTGATTTCTCG 612
|| || | | ||||| ||| |||| ||||| | ||||||||||||||
Sbjct 580 TCTCCTATTCCCGTCAAATTTGATTTTTGTGAATTTCTCATCCGAAGCTTTGATTTCTCG 639
Query 613 AGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGTTTGATAAATGCGATTTA 672
||||| ||| |||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 640 AGGGATATATTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGATGGATTTTTGCGATTTA 699
Query 673 CTTGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAATCAATGTTGTAAGACA 732
|||| ||||||||||||||| | | ||||||||||||||||||| ||||||| |||||||
Sbjct 700 CTTGTCCTCCAAGTTTTCAATGAAAATAGGTTATCCTTGTTAAAGCAATGTTATAAGACA 759
Query 733 AGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAGTAACAACAATGGATCA 792
|||| | ||||||||||||||||||||||| ||||||||||||||||| |||| | |
Sbjct 760 AGGAAGGTTGAGATTTGGGTTACGAAGAAGGAGATTGATTCTAGTAACTACAACAG-TGG 818
Query 793 G-ACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACCAAATAACTTGCCAAACTTATT 851
| | ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||
Sbjct 819 GGAGGAAGTTGTGTGGATTAGCTTGTTGACTTTTCCATCAAGTAACTTGCCAAACCTATG 878
Query 852 TATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTAATCATTTATTG 911
|| | | |||| | ||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 879 TAATAAGCGTTACGACATTAGTTACTTCATCTATGACAAGACCACCCTAATCATGTGTTG 938
Query 912 TGAAGACGA-GAACACTTCAGCGGCTTGCATCTATATCATCAGGGGGGATTTGTTCAAGA 970
|| ||||| | | | | | ||||||||||||| ||||||| ||||| |||||||
Sbjct 939 TGGTGACGATGGAGG-TGGAACCCCTTGCATCTATATTGTCAGGGGAGATTTCTTCAAGA 997
Query 971 AGTTTGAAATTGATTCCTCTGCTTT-CTTTTGTTATCACTGTGTTTATGCTCCCAATTTT 1029
|| || ||||| | || | | ||| | |||| ||||||| ||||||||||||||||
Sbjct 998 AGATTCAAATTAACTC-TGGGGTTTTCCGGTGTTGTCACTGTATTTATGCTCCCAATTTC 1056
Query 1030 ATCCCTCTTCCTTTA 1044
||||| ||||||||
Sbjct 1057 ATCCCGGTTCCTTTA 1071
> Ahg341755 jgi|Araly1|341755|fgenesh1_pg.C_scaffold_3001518
Length=1110
Score = 499 bits (270), Expect = 1e-140
Identities = 603/756 (80%), Gaps = 54/756 (7%)
Strand=Plus/Plus
Query 314 TTAAATGGATCGAGTACGA-GAATAAAGGTTTCAATGTATGTGGCGTAGGATACGATAAT 372
||||||||||||||| | | | ||||| ||| |||| | |||||| ||||||||||||
Sbjct 383 TTAAATGGATCGAGTGCAATG-ATAAATATTTTGATGTCTCTGGCGTGGGATACGATAAT 441
Query 373 ACTAGGCCTGAGAAGGTTTACAAAATCTT-GGAGTATTTAGAGTGTCGCCGTGAAGAGAG 431
||||| || || ||||||||||| ||||| || || ||| | | | | || | |
Sbjct 442 ACTAGACCCGAAAAGGTTTACAAGATCTTAGG-GTCTTT-TA-TAT---C-TG--G-TTG 491
Query 432 CTCGAACGCATGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTT 491
| || | | | | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 492 -T--AA---A-G-T-CGAGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTC 542
Query 492 TATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTT 551
||||||| | |||||| || || | ||||| | ||| |||||| |||||||| |||
Sbjct 543 TATTGATTCATCTAACGAGCAATGCCCCTTAAGCCAAGTTAAACGATTCAGTGTGTCCTT 602
Query 552 GAACGGAAATCTCTATTGGC-T-TTC-T-TT----TGA---T-GACTTTCGCATCCTATG 599
|||||||||||||||||||| | || | || | | |||||| ||||| | |
Sbjct 603 GAACGGAAATCTCTATTGGCGTACTCGTATTCCCCACACTTTAGACTTTTACATCCGAAG 662
Query 600 CTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCG-GAAGTTTG 658
|||||||||||||||||| ||| |||||| |||||||||||||||||| || | || |
Sbjct 663 CTTTGATTTCTCGAGGGATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATC 721
Query 659 ATAAAT-GCGATTTACTTGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAAT 717
|| | ||||| |||||| ||| ||||| ||||||||||||||| |||||||||||
Sbjct 722 AT-TTTCGCGATGTACTTGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAG 780
Query 718 CAATGTTGTAAGACAAGGA-CGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAG 776
||||||| | |||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 781 CAATGTTATGTGACAAGGAGCG-TTGAGATTTGGGTTACGAAGAAGAAGATTGA---TAG 836
Query 777 TAACAACAATGGATCAGACGAAGTTGTGTGGATT-AGCTTGTTGACTTTGCCACCAAATA 835
||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 837 TAACAACAATGGAACAGACGAAGTTGTGTGGATTAAG-TTGTTGACTTTGCCAACAAATA 895
Query 836 ACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCA 895
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACTTGCCAAACTTATATAATAAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCA 955
Query 896 CCTTAATCATTTATTGTGAAGACGA-GAACACTTCA--GCGG-CTTGCATCTA--TATCA 949
|| ||||||| | ||||| || || || | | |||| ||| |||||| |||
Sbjct 956 CCCTAATCATGTGTTGTGGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTG 1014
Query 950 TCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTT-CTTTTGTTATCAC 1008
||||| | ||||||||||||||| || ||||||||| | | ||| | |||| ||||
Sbjct 1015 TCAGGAGAGATTTGTTCAAGAAGATTCCAATTGATTC-TGGGGTTTTCCGGTGTTGTCAC 1073
Query 1009 TGTGTTTATGCTCCCAATTTTATCCCTCTTCCTTTA 1044
||| |||||||||| ||||||||||| ||||||||
Sbjct 1074 TGTCTTTATGCTCCGAATTTTATCCCGGTTCCTTTA 1109
> Ahg887299 jgi|Araly1|887299|Al_scaffold_0408_1
Length=1044
Score = 459 bits (248), Expect = 2e-128
Identities = 461/560 (82%), Gaps = 30/560 (5%)
Strand=Plus/Plus
Query 449 AGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTTTATTGATACTTCTAACA 508
||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||
Sbjct 479 AGAGAGTTGCGATCTACGAGTGTGCCTCTCACGCGTTCAAGTCTATTGATTCATCTAACG 538
Query 509 AGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTTGAACGGAAATCTCTATT 568
|| || | ||||| | ||| |||||| |||||||| ||||||||||||||||||||
Sbjct 539 AGCAATGCCCCTTAAGCCAAGTTAAACGATTCAGTGTGTCCTTGAACGGAAATCTCTATT 598
Query 569 GGC-T-TTC-T-TT----TGA---T-GACTTTCGCATCCTATGCTTTGATTTCTCGAGGG 616
||| | || | || | | |||||| ||||| | ||||||||||||||||||
Sbjct 599 GGCGTACTCGTATTCCCCACACTTTAGACTTTTACATCCGAAGCTTTGATTTCTCGAGGG 658
Query 617 AGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCG-GAAGTTTGATAAAT-GCGATTTACT 674
| ||| |||||| |||||||||||||||||| || | || | || | ||||| ||||
Sbjct 659 ATATATTCAAACACTTTTGTCTCCTTCCGTGCCGCG-AGAATCAT-TTTCGCGATGTACT 716
Query 675 TGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAATCAATGTTGTAAGACAAG 734
|| ||| ||||| ||||||||||||||| ||||||||||| ||||||| | ||||||
Sbjct 717 TGTTCTCGGAGTTTACAAGGGAGATAGGTTGTCCTTGTTAAAGCAATGTTATGTGACAAG 776
Query 735 GA-CGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAGTAACAACAATGGATCAG 793
|| || ||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 777 GAGCG-TTGAGATTTGGGTTACGAAGAAGAAGATTGA---TAGTAACAACAATGGAACAG 832
Query 794 ACGAAGTTGTGTGGATT-AGCTTGTTGACTTTGCCACCAAATAACTTGCCAAACTTATTT 852
||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |
Sbjct 833 ACGAAGTTGTGTGGATTAAG-TTGTTGACTTTGCCAACAAATAACTTGCCAAACTTATAT 891
Query 853 ATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTAATCATTTATTGT 912
| | |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 892 AATAAGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCCTAATCATGTGTTGT 951
Query 913 GAAGACGA-GAACACTTCA--GCGG-CTTGCATCTA--TATCATCAGGGGGGATTTGTTC 966
| || || || | | |||| ||| |||||| ||| ||||| | |||||||||
Sbjct 952 GGTGAAGATGATGG-TGGAACGCGGGCTTTCATCTACATATTGTCAGGAGAGATTTGTTC 1010
Query 967 AAGAAGTTTGAAATTGATTC 986
|||||| || |||||||||
Sbjct 1011 AAGAAGATTCCAATTGATTC 1030
> Ahg929444 jgi|Araly1|929444|scaffold_301901.1
Length=1159
Score = 429 bits (232), Expect = 2e-119
Identities = 594/760 (78%), Gaps = 59/760 (8%)
Strand=Plus/Plus
Query 314 TTAAATGGATCGAGTACGAGAATAAAG-GTTTCAATGTATGTGGCGTAGGATACGATAAT 372
|||||||||||||||||||| |||||| | ||| |||| | |||| ||||||||||||||
Sbjct 403 TTAAATGGATCGAGTACGAGGATAAAGAG-TTCTATGTTTTTGGCTTAGGATACGATAAT 461
Query 373 ACTAGGCCTGAGAAGGT-TTACAAAATC-TTGGAGTATTTAGAGTGTCGCCGTGAAGAGA 430
|||| || || || || ||||| ||| |||| |||||| | | ||| ||| | ||
Sbjct 462 ACTATACC-GAAAAAGTATTACAGGATCTTTGG-GTATTTTGTGCGTCATCGT-CA-AG- 516
Query 431 GCTC-GA-ACGCA-TGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487
| | || | | | | | ||||||||||||| || |||||||||| ||||| ||||| |
Sbjct 517 TC-CAGAGA-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTA 573
Query 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCAT-AAGCGATG-TTCAACGA-TACAGTG 544
||| ||||||||| || || ||| |||| ||| |||| | | | | |||| | | ||
Sbjct 574 AGTATATTGATACACCTGACGAGGACTGGCCCATAAAGC-AAGCTAC-ACGAGGA-AATG 630
Query 545 TGTGCTTGAACGGAAATCTCTATTGGCTTTC-T-T--T--------TGATGACT-TTCGC 591
||| |||||||||||||||||||||| || | | | | | |||| | || |
Sbjct 631 TGTCCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATT-AC 689
Query 592 ATCCTATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTC-CTTCCGTGTCG 650
|||| | ||||||||||||||||||| ||||||||| | ||||||||| | ||||||| |
Sbjct 690 ATCCAAAGCTTTGATTTCTCGAGGGATATAGTCAAAGCTTTTTGTCTCAC-TCCGTGTAG 748
Query 651 GAAG-TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATC 707
|||| ||| | ||||| ||||| |||| | |||||| ||||||||| |||| ||
Sbjct 749 GAAGAACCGAT--CTCGCGATGTACTTTTCCTCTC-AGTTTTTAAGGGAGATGGGTTTTC 805
Query 708 CTTGTTAAATCAATGTTGTAAGACAAGGA-CGATTGAGATTTGGGTTACGAAGAAGAAGA 766
||||||||| ||||||| | |||||||| || | |||||||||||||||||||||||||
Sbjct 806 CTTGTTAAAGCAATGTTATGTGACAAGGAGCG-TCGAGATTTGGGTTACGAAGAAGAAGA 864
Query 767 TTGATTCTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTAGCTTGTTGACTTTG 825
||||| ||||||||||| |||| || || | |||||||||||| ||| ||| ||||
Sbjct 865 TTGATACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTG 920
Query 826 CCACCAAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTAT 885
||| ||| ||||||||||| |||| ||| | || ||||||||||||||| |||||||||
Sbjct 921 CCAACAACTAACTTGCCAAGCTTAATTAATAAGTTTTATGGCATTAGTTATTTCATCTAT 980
Query 886 GACAAGACCACC-TTAATCATTTATTGT-GAAGACGA-GAACACTTCAGCGGCTTGCATC 942
|||||||||||| ||| |||| | |||| | ||||| ||| | | ||| ||||||||
Sbjct 981 GACAAGACCACCCTTA-TCATGTGTTGTTGT-GACGATGAAAA-TAGAGCCACTTGCATC 1037
Query 943 TATATCATCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTT-CTTTTG 1001
||||| | ||||| ||||||||||||||| || |||| |||| | | ||| | ||
Sbjct 1038 TATATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTC-TGGGGTTTTCCAGTG 1096
Query 1002 TTATCACTGTGTTTATGCTCCCAATTTTATCCCTCTTCCT 1041
|| |||||||||||||||||||||||| ||||| || |||
Sbjct 1097 TTGTCACTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
> Ahg929442 jgi|Araly1|929442|scaffold_301899.1
Length=1159
Score = 429 bits (232), Expect = 2e-119
Identities = 594/760 (78%), Gaps = 59/760 (8%)
Strand=Plus/Plus
Query 314 TTAAATGGATCGAGTACGAGAATAAAG-GTTTCAATGTATGTGGCGTAGGATACGATAAT 372
|||||||||||||||||||| |||||| | ||| |||| | |||| ||||||||||||||
Sbjct 403 TTAAATGGATCGAGTACGAGGATAAAGAG-TTCTATGTTTTTGGCTTAGGATACGATAAT 461
Query 373 ACTAGGCCTGAGAAGGT-TTACAAAATC-TTGGAGTATTTAGAGTGTCGCCGTGAAGAGA 430
|||| || || || || ||||| ||| |||| |||||| | | ||| ||| | ||
Sbjct 462 ACTATACC-GAAAAAGTATTACAGGATCTTTGG-GTATTTTGTGCGTCATCGT-CA-AG- 516
Query 431 GCTC-GA-ACGCA-TGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487
| | || | | | | | ||||||||||||| || |||||||||| ||||| ||||| |
Sbjct 517 TC-CAGAGA-G-ATTACCACCAGAGAGTTGCCATTTACGAGTGTGTGTCTCAAGCGTTTA 573
Query 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCAT-AAGCGATG-TTCAACGA-TACAGTG 544
||| ||||||||| || || ||| |||| ||| |||| | | | | |||| | | ||
Sbjct 574 AGTATATTGATACACCTGACGAGGACTGGCCCATAAAGC-AAGCTAC-ACGAGGA-AATG 630
Query 545 TGTGCTTGAACGGAAATCTCTATTGGCTTTC-T-T--T--------TGATGACT-TTCGC 591
||| |||||||||||||||||||||| || | | | | | |||| | || |
Sbjct 631 TGTCCTTGAACGGAAATCTCTATTGGGTTGCTTGTAATCCCAACACTCATGAGTATT-AC 689
Query 592 ATCCTATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTC-CTTCCGTGTCG 650
|||| | ||||||||||||||||||| ||||||||| | ||||||||| | ||||||| |
Sbjct 690 ATCCAAAGCTTTGATTTCTCGAGGGATATAGTCAAAGCTTTTTGTCTCAC-TCCGTGTAG 748
Query 651 GAAG-TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATC 707
|||| ||| | ||||| ||||| |||| | |||||| ||||||||| |||| ||
Sbjct 749 GAAGAACCGAT--CTCGCGATGTACTTTTCCTCTC-AGTTTTTAAGGGAGATGGGTTTTC 805
Query 708 CTTGTTAAATCAATGTTGTAAGACAAGGA-CGATTGAGATTTGGGTTACGAAGAAGAAGA 766
||||||||| ||||||| | |||||||| || | |||||||||||||||||||||||||
Sbjct 806 CTTGTTAAAGCAATGTTATGTGACAAGGAGCG-TCGAGATTTGGGTTACGAAGAAGAAGA 864
Query 767 TTGATTCTAGTAACAACAATGGATCAGACGA-AGTTGTGTGGATTAGCTTGTTGACTTTG 825
||||| ||||||||||| |||| || || | |||||||||||| ||| ||| ||||
Sbjct 865 TTGATACTAGTAACAACGGTGGAG-AG--GATA-TTGTGTGGATTAACTTAATGATTTTG 920
Query 826 CCACCAAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTAT 885
||| ||| ||||||||||| |||| ||| | || ||||||||||||||| |||||||||
Sbjct 921 CCAACAACTAACTTGCCAAGCTTAATTAATAAGTTTTATGGCATTAGTTATTTCATCTAT 980
Query 886 GACAAGACCACC-TTAATCATTTATTGT-GAAGACGA-GAACACTTCAGCGGCTTGCATC 942
|||||||||||| ||| |||| | |||| | ||||| ||| | | ||| ||||||||
Sbjct 981 GACAAGACCACCCTTA-TCATGTGTTGTTGT-GACGATGAAAA-TAGAGCCACTTGCATC 1037
Query 943 TATATCATCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTT-CTTTTG 1001
||||| | ||||| ||||||||||||||| || |||| |||| | | ||| | ||
Sbjct 1038 TATATTGTTAGGGGAGATTTGTTCAAGAAGATTCAAATCAATTC-TGGGGTTTTCCAGTG 1096
Query 1002 TTATCACTGTGTTTATGCTCCCAATTTTATCCCTCTTCCT 1041
|| |||||||||||||||||||||||| ||||| || |||
Sbjct 1097 TTGTCACTGTGTTTATGCTCCCAATTTGATCCCGCT-CCT 1135
> Ahg925882 jgi|Araly1|925882|scaffold_201443.1
Length=859
Score = 193 bits (104), Expect = 3e-48
Identities = 542/742 (73%), Gaps = 76/742 (10%)
Strand=Plus/Plus
Query 318 ATGGATCGAGTACGAGAATAAAGG-TTTCAATGTATGTGGCGTAGGATACGATAATACTA 376
|||||||||||||||| ||||||| |||| || | || || ||||||||||||| | ||
Sbjct 125 ATGGATCGAGTACGAGGATAAAGGTTTTC-ATTTTTGCGGTGTAGGATACGATAGTTGTA 183
Query 377 GGCCTGAGAAG-GTTTACAAAATCTTGGAGTA-TTTAGAGTGTCGCCGTGAAG--AGAG- 431
|| || ||| | |||||| ||||||| ||| |||| | |||| |||| ||| || |
Sbjct 184 AACCCGAAAAGAG-TTACAAGATCTTGGGGTATTTTA-ATTGTCTCCGTAAAGTCAGCGA 241
Query 432 CTC-GA--ACGCATGCTACCAG-AGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCA 487
| | | | | | | |||| | ||||||||||| ||||||||| | ||||||||||| |
Sbjct 242 CACTTACCATGTAAGTTACC-GCAGAGTTGCGATTTACGAGTGTTCGTCTCATGCGTTGA 300
Query 488 AGTTTATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGT 547
|||| |||||| | || || | ||| ||| | ||| | || | | |||
Sbjct 301 AGTTCATTGATGCCCCTTTCACGCAGTGGCCCAT---C-ATG-GC-AC----C--TTTGT 348
Query 548 GCTTGAACGGAAATCTCTATTGGCTTTCTTTTG-A--T--GACTT-T-CG-----CATCC 595
||||||||| ||||||||||||||| || || | | ||||| | | |||||
Sbjct 349 CCTTGAACGGGAATCTCTATTGGCTTACTCATGAACCTGAGACTTATAAGTATTTCATCC 408
Query 596 TATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAG- 654
| ||||||||||||| | ||||||| ||||||| ||||||||||| || |||| |||
Sbjct 409 GAAGCTTTGATTTCTCCAAGGAGATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAAGA 468
Query 655 TTTGATAAAT-GCGATTTACTTGCCCTC-CAAGTTTTCAAGGGAGATAGGTTATCCTTGT 712
| | | | ||| ||||| |||| | ||||| || ||||| |||| || ||||
Sbjct 469 ACCG-T-TCTCGAGATGAACTTGTCCTCGC-GGTTTTTAAAAGAGATCGGTTTTCGTTGT 525
Query 713 TAAATCAATGT--TGTAAGACAAGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGA 770
|||| |||||| ||| | ||| ||| |||||| |||||||| ||||||||| | | ||
Sbjct 526 TAAAGCAATGTAATGT-A-ACAGGGAAGATTGATATTTGGGTAACGAAGAAG-A-A--GA 579
Query 771 TTCTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACC 830
| | | |||| ||| ||||| |||||||| | |||| ||||||||||| |
Sbjct 580 -T-T-G--------ATGG---AGAGGAAGTAGTGTGGATAAACTTGATGACTTTGCCAAC 625
Query 831 AAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAA 890
|| ||||||| | || || ||| | || || |||||||||||||||||||||||||||
Sbjct 626 AACTAACTTGTCTAAGTTGGTTAATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAA 685
Query 891 GACCACCTTAATCATTTATTGTGAAGACGAG-AACACTTCAGCGGCTTGCATCTATATCA 949
|||| | | |||||| | ||||| ||| | || ||| ||| |||||||||||| |
Sbjct 686 GACC-C-T-AATCATGTGTTGTGGCGACCACCAA-ACTGGAGCCGCTTGCATCTATTTTG 741
Query 950 TCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCT-GCT-TTCTTTTGTTATCA 1007
| | ||| ||| | ||||||||| || |||| |||||| | | | ||| || || |||
Sbjct 742 TGAAGGGAGATATATTCAAGAAGATTCAAATAGATTCCGGTAG-TGTTCGGTT-TTCTCA 799
Query 1008 CTGTGTTTATGCTCCCAATTTT 1029
|||||| ||| || |||| |||
Sbjct 800 CTGTGTCTAT-CTTCCAAATTT 820
> Ahg338904 jgi|Araly1|338904|fgenesh1_pg.C_scaffold_2001003
Length=966
Score = 143 bits (77), Expect = 3e-33
Identities = 148/182 (81%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 9 GCTTCCATGGGAGCTGGAGGAAGATATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCA 68
|||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 15 GCTTCCGCGGGAGTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCG 74
Query 69 ATTCAGATCGGTTTGCAAACGA-TGGAATGC-TCTTTTTGATGTTAAAAGTTTCAACAAG 126
|||||||| || || |||| | ||||| | |||||| | | ||||| |||| |||
Sbjct 75 GTTCAGATCTGTATGTAAAC-ACTGGAAA-CATCTTTTCAACGACAAAAGGTTCATCAAC 132
Query 127 GACCAG-TTCGCTCGTGCTCGTCCTCAGTTCATCTTCATTACCGATTCCAAGATTTATTC 185
|| || || |||||||| ||||| || |||||| || | ||| | ||||||||||||||
Sbjct 133 AAC-AGCTTAGCTCGTGCCCGTCCCCAATTCATCATCCTGACCAAATCCAAGATTTATTC 191
Query 186 GA 187
||
Sbjct 192 GA 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5