BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16565.2
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479120 jgi|Araly1|479120|fgenesh2_kg.3__1821__AT3G16565.2 1727 0.0
> Ahg479120 jgi|Araly1|479120|fgenesh2_kg.3__1821__AT3G16565.2
Length=1111
Score = 1727 bits (935), Expect = 0.0
Identities = 1058/1117 (95%), Gaps = 10/1117 (1%)
Strand=Plus/Plus
Query 26 GTTGACCGCGACGAATCCGTCGGAAACCGGAATCACCATGGATTTTCCTCCGACGAAGCT 85
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GTTCACCGCGACGAAGCCGTCGGAAATCGGAATCACCATGGATTTTCCTCCGACGAAGCT 60
Query 86 TGATTATCATGTAGACATGTTCAATCTTCAGTCTCATTCCAGATTTCTCTCCTTATTTAA 145
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 61 TGATTATCATGTAGACATGTTCAATCTTCAATCTCAATCCAGATTTATCTCCGTATTTAA 120
Query 146 GGCGCAAGATGGACGCATAGCTCTAATACTAGAATCAACGGTGTTTCATCCACAAGGTGG 205
|||||||||||| ||||||||| ||||||| || || |||||||||||||||||||||||
Sbjct 121 GGCGCAAGATGGGCGCATAGCTATAATACTGGACTCGACGGTGTTTCATCCACAAGGTGG 180
Query 206 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTGAAATTTTCCGT 265
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTCAAATTTTCCGT 240
Query 266 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 300
Query 326 TCCTGAAAGTGGAATTGATAGTGAGAAAGGGAAAGAAGTTTACTTAACTGTTGATGAATC 385
|||||| |||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 TCCTGAGAGTGGAATGGATATTGAGAAAGAGAAAGAAGTTTACTTAATTGTTGATGAATC 360
Query 386 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGCTGGACACTTGCTAGATATGTGTATGCA 445
|||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 361 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGGTGGACATTTGCTAGATTTGTGTATGCA 420
Query 446 GAAAGTTGGGTTAGGACATTTGGAGCCTGGAAAAGGGTACCATTTTCCTGACGGTCCTTT 505
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 421 GAAAGTTGGGTTAGGGCATTTGGAGCCTGGAAAAGGGTACCATTTTCCGGACGGTCCATT 480
Query 506 TGTGGAATACAAAGGAAGCGTCCCAC-AGGAGGAG-TTTCAGGTGAAGCAGAAAGAGTTG 563
||| ||||||||||||||||| |||| ||| ||| | || | ||||||||||||||||
Sbjct 481 TGTAGAATACAAAGGAAGCGTTCCACAAGG-TGAGATGGCA-GAGAAGCAGAAAGAGTTG 538
Query 564 GAGGCAGAAGCTAACGAACTGATATCCAAAGGAGGAAAGGTTTATGCTGCTATATTGCCC 623
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 539 GAGGCAGAAGCTAATGACCTGATAACCAAAGGAGGAAAGGTTTATGCTGCTATATTACCC 598
Query 624 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAGTCTTCCTGATTATATTTCCAAGGGCAGC 683
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAATCTTCCTGATTATATTTCCAAGGGCAGC 658
Query 684 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCATGTGGTGGAACCCATGTC 743
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCGTGTGGTGGAACCCATGTC 718
Query 744 TCCAATTTATCCGATATCATAAG-CATGAAGATCACACAGATGAGAACAAAGAAAGGAAT 802
||| ||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 719 TCCGATTTATCTGATATCAT-AGCCATGAAGGTCACACAGATGAGAACAAAGAAAGGAAT 777
Query 803 GACGAAAGTTTTCTACACCATTGCATCTTGAAACTCTTATGGGTTCCAGTTTCTATACGG 862
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 AACGAAAGTTTTCTACAGCATTGCATCTTGATACTCTTATGGGTTCCAGTTTCTATACGG 837
Query 863 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 897
Query 923 CTTCAACAGCAAGCAGCTTCTCCTGTGCCTCAACAGCCACAAATCAGTATTTGTGGGTAT 982
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 898 CTTCAACAGCAAGCAGCTTCTCCTGTGC-TCAACAGCCATAAATTTGTATTTGTGGGTAT 956
Query 983 TTATCAATCTCTTAAACGACTCTCTCTATTATTGATAAGTCGTATATGATATATGATATT 1042
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 957 TTATCAATCTCTTAAACGACTCTCTCTATCATTGATAAGTCGTATATGATAT--GATATT 1014
Query 1043 GATGTGATATTTTCTTCCACTCAGCCTCTTAATTAGTATTAATATATTGACTCTT-GGTA 1101
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1015 GATGTGATATTATCTTCCACTCAGCCTCTTAATTAGTATTACTATATTGACTCTTTGGTA 1074
Query 1102 TTGTAGAATCGTACCGGTCATTTGGTCCTAGATTTTT 1138
||||||||||||||||| |||||||||||||||||||
Sbjct 1075 TTGTAGAATCGTACCGGACATTTGGTCCTAGATTTTT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5