BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16570.1

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929488 jgi|Araly1|929488|scaffold_301945.1                        651    0.0  


> Ahg929488 jgi|Araly1|929488|scaffold_301945.1
Length=454

 Score =  651 bits (352),  Expect = 0.0
 Identities = 421/453 (93%), Gaps = 9/453 (2%)
 Strand=Plus/Plus

Query  31   GCTACAGTGTACAGAAGAA-AATGAGAGGACTCTCCAGAAACTCCGGCGCGGCGGCGATA  89
            |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GCTACAGTCTACAGAA-AACAATGAGAGGACTCTCCAGAAACTCCGGCGCGGCGGCGATA  59

Query  90   TTCGCGATTCTACTCATTCTCGCCGTTC-ATAACTGGTCCGTCGCCGTATCTTCTCAATC  148
            |||||||||||| | || |||||||||| ||  |||||| ||| ||||||||||||||||
Sbjct  60   TTCGCGATTCTAGTAATCCTCGCCGTTCAAT-TCTGGTCTGTCACCGTATCTTCTCAATC  118

Query  149  CACCGAATTCGCCGGAGATTTCCCTCCATTCGAAACAGAGTGCCGCGGTACAATTGCCGA  208
            || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  119  CATCGAATTCGCCGGAGATTTCCCTCCTTTCGAAACAGAGTGCCGCGGTACAATTGCCGA  178

Query  209  GTGCTCTGTTTCCGCCGCCCTCGGAGACGGA-GGAGATCTATTCTACGGCGGAGGAGAAA  267
            |||||| || |||||||| || || || ||| ||||||||||||||||||||||||||||
Sbjct  179  GTGCTCAGTATCCGCCGCTCTAGGCGA-GGACGGAGATCTATTCTACGGCGGAGGAGAAA  237

Query  268  TGGGAGAGGAGTTCGAGATGGACTCAGAGATCAACCGGCGCATATTAGCTACGAGGAGGT  327
            |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  238  TGGGAGAGGAGTTCGAGATGGAATCAGAGATCAACCGGCGCATATTAGCGACGAGGAGGT  297

Query  328  ACATCAGCTATGGTGCGCTGAGGAGAAACACAATTCCGTGCTCACGTCGCGGCGCATCTT  387
            |||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||
Sbjct  298  ACATCAGCTATGGTGCGCTGAGAAGAAACACTGTTCCGTGCTCACGTCGCGGCGCATCTT  357

Query  388  ACTACAATTGTCGACGTGGCGCTCAGGCCAATCCTTACTCTCGTGGCTGCAGCGCCATCA  447
            ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct  358  ACTACAATTGTCGACGTGGCGCTCAGGCCAATCCTTACTCTCGCGGTTGCAGCACCATCA  417

Query  448  CTCGCTGCCGGCGCTCATGAATCTATCACTGTC  480
            |||||||||||||||   |||||| ||||||||
Sbjct  418  CTCGCTGCCGGCGCT---GAATCTGTCACTGTC  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26381058564


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5