BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16580.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479123 jgi|Araly1|479123|fgenesh2_kg.3__1824__AT3G16580.1 1690 0.0
Ahg905835 jgi|Araly1|905835|Al_scaffold_0003_2963 632 2e-180
Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477 536 1e-151
Ahg949400 jgi|Araly1|949400|scaffold_801287.1 363 3e-99
Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479 315 7e-85
Ahg929451 jgi|Araly1|929451|scaffold_301908.1 195 1e-48
> Ahg479123 jgi|Araly1|479123|fgenesh2_kg.3__1824__AT3G16580.1
Length=1338
Score = 1690 bits (915), Expect = 0.0
Identities = 1205/1338 (90%), Gaps = 48/1338 (4%)
Strand=Plus/Plus
Query 64 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCAGAATCTCTTCTTCGC 123
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 19 CTTCCATGGGAGTTAATTGAAGAGATACTTTCTCGTGTCCCACCAGAATCTCTTCTTCGC 78
Query 124 TTCAAAACCGTATCGAAACAATGGAACGCTCTCTTCCG-CGATAAGACGTTCATCAATAA 182
|||||||||||||| |||||||||||||||||||| || ||| |||||||||||||| ||
Sbjct 79 TTCAAAACCGTATCAAAACAATGGAACGCTCTCTT-CGACGACAAGACGTTCATCAACAA 137
Query 183 CCACAAGATGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CCACAAGACGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT 197
Query 243 CGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATGA 302
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 198 CGATCCCAAGATAGCGGTGTGTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTC---A 254
Query 303 GATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAGT 362
||||| ||||| ||||||||| || || |||| || ||||||||||||||||||||||
Sbjct 255 GATACTTAAAAGCTTGGTTGATGGCAATGAGTTGTTGCTATGTGACATGGAGAAAGGAGC 314
Query 363 TGTGCTTTGGAACCCGTGGCTGAGACATAGTACATGGATCGACCAGGGTTCAAACCACAC 422
|||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 315 TGTGGTTTGGAACCCGTGGCTGAGACATAGTAGATGGATCGACCAGGATTCAAACCACAC 374
Query 423 TCGA-ATGGAGTCTTATGGCATAGGATACAACAATAAGGGGAGTTACAAGATCTTTGCTT 481
| | | |||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 375 T-AAGAGGGAGTCATATGGCTTAGGATACAACAATAAGGGGAGTTACAAGATCTTCGCTG 433
Query 482 TTTGTGATCGGAAGGAAAACCACACCCAGAGATTGTTGACAATCCATGACTCTGCCTCTG 541
|||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct 434 CTTGTGATCGGAAGGAAAACCCCAACCAGAGATTGTTGACAATCCGTGACTTTGCCTCTG 493
Query 542 ATGCGTGGAAAGACCGCGAGCCTATTGATAATAGTCAGGGAA--AACAAATTGTTCATAA 599
|||||||||||||||||||| || ||||||||||| | || || || || | |||
Sbjct 494 ATGCGTGGAAAGACCGCGAGTCTGGAGATAATAGTCA-GCAAGTAA-AACCTG-T--TAA 548
Query 600 CATATACACTA-AAATTAGTGGTGTATCATTGAATGGAAATTTGTATTTGGTTACTTATT 658
|| ||||| | ||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 549 -AT-TACAC-AGAAA-AACTGGTGTATCGTTGAATGGAAATTTGTATTTGGTTACTTATT 604
Query 659 TTGAAACGACTGATCTCGTGTACCACCTAATTGAAATCAATTCTTCGAGCGAAAGCGTCG 718
||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 605 ATGAAAAGACTGATCTTGTGTACCACCTAACTAAAATCAATTCTTCGAGCGAAAGCATTG 664
Query 719 TGA-AGTTTTGTGATCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCT-TTCGTCCT 776
||| | |||||||||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 665 TGATA-TTTTGTGATCTACCATGTGGGACGACGAACTTTGATAAGGATGCTCTT-GTCCT 722
Query 777 TAGGGTTTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGAT 836
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCGGGTTTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGAT 782
Query 837 TGAGATTTGGGTGAGCAAGTACAAGATTAATAATAATCTTGATAG--A-GATGTGGAATG 893
|||| ||||||||||||||||||||||||| |||||||||||| | | |||||||||||
Sbjct 783 TGAGCTTTGGGTGAGCAAGTACAAGATTAACAATAATCTTGATCGTGAAGATGTGGAATG 842
Query 894 GATAAAGTTCATGGAAGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATGGATTCGACTC 953
|||||||||||||||| | ||||||||||||||||||||||||||||| |||| | ||||
Sbjct 843 GATAAAGTTCATGGAACTGTCAAGTCCTAACTTGCCGGATTTAGTAGACGGATCCAACTC 902
Query 954 TCAGCCAAGTTACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGAAACTGG 1013
|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 903 TCAGCCAAGTTACTTTATTGGAGATAAAAGGCTTGTCGTGTGCTCGTGTGACGAAACTGG 962
Query 1014 TCGGGCTTGGATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAATTGATTC 1073
||||| ||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 963 TCGGGTTTGGATCTATGTTTTGGGGGGGAATAAGTTGATCAGTAAAACTCAAATAGATTC 1022
Query 1074 TGTGGTGGATCTTTGGCCTTCACACTGGACCTTTATTCCCAGTTTGGTACCGGTTCCTCG 1133
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1023 TGTGGTGGATCTTTGGCCTTCGCACTGTACCTTTATTCCCAGTTTGGTACCGGTTCCTCT 1082
Query 1134 AGCTCAAAGAGAAGAACCAGCAGAATTACAAGTTTGATTTTAGTTACATTTTAG-CTTCT 1192
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||
Sbjct 1083 AGCTCAAAGAGAAGAACCAGCAGAATTACAAGTTTGATTTTATTTACAGTTT-GTCTTCT 1141
Query 1193 TGTTTGGTTGTTGAGGAAGCTAAATTTTATTTGGATTTCAGTATTTTTATTCACAAACCA 1252
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1142 TGTTTGGTTGTTGAGGAAGCTAAATTTTATTTGGATTTCGGTGTTTTTATTCACAAACCA 1201
Query 1253 TCTTCTTTGTTGC---TGATA-ATT---G--A--T--TAA-TCTCCCTTTCTTTGTTTTG 1298
||||||||||||| | ||| ||| | | | ||| |||||||||||||||||||
Sbjct 1202 TCTTCTTTGTTGCAACT-ATAGATTTTTGCTAAGTGATAAATCTCCCTTTCTTTGTTTTG 1260
Query 1299 -TAGCTTCTTTTGGCAAAATAAATTCTTAATAATGTATCCTTT---A-GATAAATCTAGA 1353
||| |||||||||||||||||||||||||| |||| | ||| | || |||||||||
Sbjct 1261 CTAGTTTCTTTTGGCAAAATAAATTCTTAATTATGTTTTTTTTTTTATGAAAAATCTAGA 1320
Query 1354 GAGAATGTTTAAGGACTC 1371
||||||||||||||||||
Sbjct 1321 GAGAATGTTTAAGGACTC 1338
> Ahg905835 jgi|Araly1|905835|Al_scaffold_0003_2963
Length=786
Score = 632 bits (342), Expect = 2e-180
Identities = 662/806 (82%), Gaps = 64/806 (8%)
Strand=Plus/Plus
Query 226 ATTTATTCGGTAAGCATCGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCC 285
|||||||||||||| ||||||| ||||||| ||| ||||||||||||| || |||||
Sbjct 1 ATTTATTCGGTAAGTATCGATCTAAAGATAGAGGTGTGTGAGTTAACCTTTTATTTTCCC 60
Query 286 GGTTTAGAATCTCATGAGATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGT 345
||||||||||| | | ||||||||| | ||| |||||||||||||||| || ||||||
Sbjct 61 GGTTTAGAATC-C--CACATACCTAAATACTTGATTGATTGCGATAAGTTGTTGCTATGT 117
Query 346 GACATGGAGAAAGGAGTTG-TGCTTTGGAACCCGTGGC-TGAGACATAGTACATGGATCG 403
| | |||||||||||||| || |||||||||| | || ||||||| |||| |||||| |
Sbjct 118 GGGACGGAGAAAGGAGTTGTTG-TTTGGAACCC-TTGCTTGAGACAGAGTAGATGGATTG 175
Query 404 ACCAGGGTTCAAACCACACTCGAATGG-AGTCTTATGGCATAGGATACAACAATAAGGGG 462
| || | || |||||| |||||||||| || | |||||||||||||||||||||||||||
Sbjct 176 AGCAAGATTTAAACCAAACTCGAATGGAAG-CCTATGGCATAGGATACAACAATAAGGGG 234
Query 463 AGTTACAAGATCTTTGCTTTTTG-TGATCGGAAGGAA-AACCACACCCAGAGATTGTTGA 520
|||||||||||| ||||| ||| || | |||||||| | || |||| |||| |||| ||
Sbjct 235 AGTTACAAGATCGTTGCTGGTTGTTG-TTGGAAGGAACATCC-CACCAAGAGCTTGTGGA 292
Query 521 CAATCCATGACTCTGCCTCTGATGCGTGGAAAGACCGCGAGCCT--A-T-TGATAATAGT 576
|||||||||||| |||||| |||| |||||||||| |||| | | | || ||||||
Sbjct 293 CAATCCATGACTTTGCCTCCAATGCATGGAAAGACCTCGAG-TTAGATTCTGGTAATAGG 351
Query 577 CAGGGA-AAAC--AAATT-GT-------TCATAA---C-ATA-TACAC--TAAAATTAGT 618
|| | | | ||| || | || | ||| ||||| |||| || |
Sbjct 352 AAGTTAGATTCTGGTATTAGTAAGGAAGAAAAAAGGCCTATATTACACAACAAAAGTACT 411
Query 619 GGTGTATCATTGAATGGAAATTTGTATTTGG-TTACTTATTT-TGA-AACGACTGATCTC 675
|||||||| ||||| ||||||||||| |||| |||||| ||| ||| || |||||||| |
Sbjct 412 GGTGTATCGTTGAACGGAAATTTGTA-TTGGATTACTT-TTTATGACAA-GACTGATCCC 468
Query 676 GTGTACCACCTAAT-TGAAA-TCAATT-CTTCGAGCG-AAAGCGTCGTGAAG-TTTTGTG 730
|||||| |||| || | ||| |||||| | ||||||| |||| || | || |||||||
Sbjct 469 GTGTACAACCT-ATAT-AAATTCAATTAC-TCGAGCGAAAAG-TTC-TTCAGATTTTGTG 523
Query 731 ATCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCT-TTCGTCCTTAGGGTTTTCGAG 789
||||||||||||| ||| || ||| ||||||||||||| || ||||| | |||||| |||
Sbjct 524 ATCTACCATGTGGAACGACGGACTATCTTAAGGATGCTCTT-GTCCTCAAGGTTTTTGAG 582
Query 790 GGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGATTTGGGTG 849
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 583 GGAGATCGTTTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGGTTTGGGTG 642
Query 850 AGCAAGTACAAGATTAATAATAATCTTG-ATAG--A-GATGTGGAATGGATAAAGTTCAT 905
|||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||
Sbjct 643 AGCAAGTACAAGATTAATAATAAT-TTGGATAGTGAAGATGTGGAATGGATAAAGTTCAT 701
Query 906 GGAAGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATGGATTCGA--CTCTCAGCCAAGT 963
|||||| |||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 702 GGAAGTGTCAAGTCCTAACTTGCCGGATTTAGTAGATCC-TA-GATACTCTCAGCCAAGT 759
Query 964 TACTTTATTGAAGATAAAAGGCTCGT 989
||||| || ||||||||| |||||||
Sbjct 760 TACTTCATCGAAGATAAA-GGCTCGT 784
> Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477
Length=1050
Score = 536 bits (290), Expect = 1e-151
Identities = 837/1086 (77%), Gaps = 97/1086 (9%)
Strand=Plus/Plus
Query 75 GTTGATTGAAGAGATACTCTCTCGTGTCCCACC-AGAATCTCTTCTTCGCTTCAAAACCG 133
||||||||||||||||||||||||||||||||| | ||| |||| ||||||||| |||||
Sbjct 30 GTTGATTGAAGAGATACTCTCTCGTGTCCCACCTA-AATGTCTTGTTCGCTTCAGAACCG 88
Query 134 TATCGAAACAATGGAACGCTCTCTTCCG-CGATAAGACGTTCATCAATAACCACAAGATG 192
||||||||||||||||| |||| ||| | ||| |||||||||||||| ||||||||||||
Sbjct 89 TATCGAAACAATGGAACACTCTTTTC-GACGACAAGACGTTCATCAACAACCACAAGATG 147
Query 193 ACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCATCGATCCCA-A 251
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |
Sbjct 148 ACGTTTCGATTCATCCTAGCAACCAAATACAGGATTTATTCGGTAAGCATCGATCCCGTA 207
Query 252 GATAGTTGTG---CGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATGAGATACC 308
|| |||||| ||||| ||||||||| || |||||| |||| | ||| | | |
Sbjct 208 -ATTGTTGTGGTACGTGACATAACCTTAGGTACTCCCGGGTTAGCTT-TCA--A-A--CT 260
Query 309 TAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAGTTGT-GC 367
|||||| |||||||||||| || ||| || ||||||| || | | || |||| || |
Sbjct 261 TAAAAACTTGGTTGATTGCAATGGGTTGTTGCTATGTGGCAAGAATAATGGAGCCGTTG- 319
Query 368 TTTGGAACCCGTGGCTGAGACATAGTACATGGATCGA-CCAGGGTTCAAACCACACTCGA 426
|||||||||| ||| || | || |||| ||||||||| || | ||| ||| || ||||
Sbjct 320 TTTGGAACCCTTGGTTGGGGCAAAGTAGATGGATCGAGCC-GAGTTTAAAACATTCTCGT 378
Query 427 ATGGAGT-CTTATGGCATAGGATACAACAATAAGGGGAGTTACAAGATCTTTGCTTTTTG 485
||| | | | | || ||||||||| |||||||| | |||||||||| ||||| |
Sbjct 379 ATGAATTTCGAA-GGTATAGGATACGACAATAAG---ACTTACAAGATCGCTGCTTCGTC 434
Query 486 TGATCGGAAGGAAA-A-CCACACCCA-GAGATTGTTGACAATCCATGACTCTGCCTCTGA 542
| ||| ||| | || || | || |||| ||||||| |||| | |||||||||
Sbjct 435 CCCTGGGATC-AAATATCC-CAATCTTGAC-TTGTGGACAATCTATGAATTTGCCTCTGA 491
Query 543 TGCGTGGAAAGACCGCGAGCCTATTGATAA-TAGTCAGGGAAAACAAATTGTTCATAACA 601
|| ||||| ||||| ||| || | || | | || | || | || | ||
Sbjct 492 TGTGTGGATAGACCACGACCC-A--GA-ACCTGGTAATGG----CG----GT--AG--CA 535
Query 602 TATACACTAAAATTAGTGGTGTATCATTGAATGGAAATTTGTATTTGGTTACTTATT-TT 660
|||||| | ||| | || |||||| |||||||||| |||||||| |||| || | ||
Sbjct 536 TATACATTGAAAGT-GT--TGTATCGTTGAATGGAACTTTGTATTGGGTTTGTTCTCATT 592
Query 661 GAA-ACGACTGATCTCGTGTACCACCTA-ATT-GAAA-T-CAA-TTCTTCGAGCGAAAGC 714
| | ||| |||| | ||| | ||| | ||| |||| | | | || ||| |||| |
Sbjct 593 -ACGA-GACCGATCCCTTGTGCTACC-ACATTAGAAAATTCGACTT-TTCCAGCGGATTA 648
Query 715 GTCGTGAAG-TTTTGTGATCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCT-TTCG 772
|| | ||| ||||||||||||||||| |||| | ||| | | ||||||| || |
Sbjct 649 TTCAT-AAGATTTTGTGATCTACCATGCGGGA-GA--AACCATGATGGGGATGCTCTT-G 703
Query 773 TCCTTAGGG-T-TTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGC-AACAA 829
||||| ||| | ||| | ||||||||| ||||| ||| ||||||||||| ||| |||||
Sbjct 704 TCCTT-GGGATCTTTAG-GGGAGATCGGTTTTCGTTGCTAAAGCAATGC-ATGGTAACAA 760
Query 830 AGAAGATTGAGATTTGGGTGAGCAAGTACAAGATTAAT-AATAATCTTGATAGAGATGTG 888
|||||||||| |||||||||| | || ||||||||||| || ||| || | ||||||
Sbjct 761 AGAAGATTGATATTTGGGTGACCGAGAACAAGATTAATGAA-AATGGTGC--G-GATGTG 816
Query 889 GAATGGATAAAGTTCATGGAAGTTT-CAAGTCCTAACTTGCCGGATTTAGTAGATGGATT 947
| ||||| || |||||| || ||| ||||||||||||||||||||||| ||
Sbjct 817 GTTTGGATGAATTTCATG-AACTTTTCAAGTCCTAACTTGCCGGATTTA-TA-------- 866
Query 948 CGACTCTCAGCCAAGTTACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGA 1007
| ||| ||||||||||||| || ||||||||||||||||| |||||||| ||| ||||
Sbjct 867 C---TCTAAGCCAAGTTACTTCATCGAAGATAAAAGGCTCGTGGTGTGCTCTTGCGACGA 923
Query 1008 AACTGGTCGGGCTTGGATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAAT 1067
|||||||| |||||||||||| | || || || |||||||||||||||||| ||| ||
Sbjct 924 CACTGGTCGTGCTTGGATCTATATATTGGGGGATAATAAGTTGATCAGTAAATTTCATAT 983
Query 1068 -TGATTCTGTGGTGGATCTTTGGCCTTCA-CACTGGACCTTTATTCCCAGTTTGGTACCG 1125
| ||| |||||| |||| ||| |||| ||||| ||||||||||||||||||||||||
Sbjct 984 AT-ATTGTGTGGTTGATCCTTG-CCTTTTGCACTGTACCTTTATTCCCAGTTTGGTACCG 1041
Query 1126 GTTCCT 1131
||||||
Sbjct 1042 GTTCCT 1047
> Ahg949400 jgi|Araly1|949400|scaffold_801287.1
Length=1147
Score = 363 bits (196), Expect = 3e-99
Identities = 356/431 (83%), Gaps = 19/431 (4%)
Strand=Plus/Plus
Query 64 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCAGA-ATCTCTTCTTCG 122
||||||||||||||| |||| |||||||||||||||||||||||| | ||||||| ||||
Sbjct 39 CTTCCATGGGAGTTGGTTGATGAGATACTCTCTCGTGTCCCACCA-ACATCTCTTTTTCG 97
Query 123 CTTCAAAACCGTATCG-AAACAATGGAACGCTCTCTTCCGCGATAAGACGTTCATCAATA 181
||||| |||||| | | |||| |||||||| ||||||| ||| ||||||||||| || |
Sbjct 98 CTTCAGAACCGT-TTGTAAACGATGGAACGTTCTCTTCTACGACAAGACGTTCATGAACA 156
Query 182 ACCACAAGATGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 241
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 157 ACCACAAGATGACGTTTCGATTCATCTTAGCAACTGAATCAAAGATTTATTCGGTAAGCA 216
Query 242 TCGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATG 301
||||||| ||||||| ||| |||||||||| ||| || |||| |||||||||| ||| |
Sbjct 217 TCGATCCAAAGATAGAGGTGTGTGAGTTAACATTATATTTTCCTGGTTTAGAATATCA-G 275
Query 302 AGATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAG 361
| | |||| || | |||||||||||||||||||| || |||| || | |||| |||||||
Sbjct 276 A-A-ACCTCAATACTTGGTTGATTGCGATAAGTTCTTGCTATATGGCTTGGATAAAGGAG 333
Query 362 TTGTGCTTTGGAACCCGTGGCTGAGACATAGTACATGGATCGA--C--CAGG-GTTCAAA 416
||| ||||||| |||||| ||||||| |||| |||||| || | | || | | |||
Sbjct 334 CCGTGGTTTGGAATCCGTGGTTGAGACAGAGTAGATGGATAGAGTCGTC-GGAGATAAAA 392
Query 417 CCACACTCGAATGGAGTCTTA-TGGCATAGGATACAACAATAAGGGGAGTTACAAGATCT 475
| | |||| ||| | | | | |||||||||| || | ||| || | ||||||||||
Sbjct 393 CAA-ACTCCTATGCAAT-TCAGTGGCATAGGAGACGTCGATA-GGA-A-TTACAAGATCC 447
Query 476 TTGCTTTTTGT 486
|||||| ||||
Sbjct 448 TTGCTTCTTGT 458
> Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479
Length=969
Score = 315 bits (170), Expect = 7e-85
Identities = 444/571 (78%), Gaps = 39/571 (7%)
Strand=Plus/Plus
Query 622 GTATCATTGAATGGAAATTTGTATTTGGTTACTTATTTTGA-AACGACTGATCTCGTGTA 680
||||| |||||||||| |||||||| |||| || | ||| | ||| | || | |||
Sbjct 412 GTATCGTTGAATGGAACTTTGTATTGGGTTTGTTCTCATGACGA-GACCGTTCCCTTGTG 470
Query 681 CCACCTA-ATT-G-AAA-TCAATTCTTCGAGCGAAAGCGTCGTGAAG-TTTTGTGATCTA 735
| ||| | ||| | ||| || ||| |||||||| | || | ||| ||||||||||||
Sbjct 471 CTACC-ACATTAGAAAATTCGATTTTTCGAGCGGATTATTCAT-AAGATTTTGTGATCTA 528
Query 736 CCATGTGGGACGTCGAACTTTCTTA--AG-GATGCT-TTCGTCCTTAGGGT-TTTCGAGG 790
||||| |||| | ||| | || || |||||| || |||||| |||| ||| | ||
Sbjct 529 CCATGCGGGA-G--AAACCATAATAGTAGCGATGCTCTT-GTCCTTGGGGTCTTTAG-GG 583
Query 791 GAGATCGATTTTCATTGTTAAAGCAATGCCAT-GCAACAAAGAAGATTGAGATTTGGGTG 849
||||||| ||||| ||| |||||||||| ||| | |||||||||||||||||||||||||
Sbjct 584 GAGATCGGTTTTCGTTGCTAAAGCAATG-CATGGTAACAAAGAAGATTGAGATTTGGGTG 642
Query 850 AGCAAGT--ACAAGATTAATAATAATCTTGATAGA-GATGTGGAATGGATAAAGTTCATG 906
| | || |||||||||| || | || | || ||||||| ||||| || |||||
Sbjct 643 A-C-TGTGAACAAGATTAACCATGAGGATGGT-GATGATGTGGTTTGGATGAATTTCAT- 698
Query 907 GA-AGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATG--G-ATTCGACTCTCAGCCAAG 962
|| ||||||||||||||||||||||||||||||| | | | || || | |||||
Sbjct 699 GACCTTTTCAAGTCCTAACTTGCCGGATTTAGTAGACACCGTAACCTACACTGATCCAAG 758
Query 963 TTACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGAA-ACTGGTCGGGCTT 1021
|||||| || |||||||| |||||||| |||||||| || || || |||||| ||||
Sbjct 759 TTACTTCATCGAAGATAAGAGGCTCGTGGTGTGCTCTTGGGAC-AACACTGGTTACGCTT 817
Query 1022 GGATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAATTGATTCTGTGGTGG 1081
|||||||| | || || || |||||||||||||||||||||| || |||| ||| || |
Sbjct 818 GGATCTATATATTGGGGGATAATAAGTTGATCAGTAAAACTCGTATAGATTGTGTTGTTG 877
Query 1082 ATCTTTGGCCTTCACACTGGACCTTTATTCCCAGTTTGGTACCGGTTCCT-C--GA-GCT 1137
||| |||||||| ||||| |||||| | ||||||||||||||||||||| | || ||
Sbjct 878 ATCCTTGGCCTTTGCACTGTACCTTTGTCCCCAGTTTGGTACCGGTTCCTGCTCGATGC- 936
Query 1138 CAAAGAGAAGAACCAGCAGAATTACAAGTTT 1168
| ||||||||||| ||||||||||| ||||
Sbjct 937 CGAAGAGAAGAACGGGCAGAATTACACGTTT 967
> Ahg929451 jgi|Araly1|929451|scaffold_301908.1
Length=252
Score = 195 bits (105), Expect = 1e-48
Identities = 208/253 (82%), Gaps = 25/253 (10%)
Strand=Plus/Plus
Query 320 TTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAG-T--TGT--GCTTTGGAA 374
||||||||||||||||||| ||||||| ||||| ||||| || | || | |||||||
Sbjct 1 TTGATTGCGATAAGTTATTGCTATGTGGCATGGTGAAAGTAGCTGCGGTACGGTTTGGAA 60
Query 375 CCCGTGGCTGAGACATAGTACATGGATCGACCAGGGTTCAAACCACACTCGA-ATGGAGT 433
|| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
Sbjct 61 CCTGTGGCTGAGACATAGTACATGGATCGACCAGGGTTTAAACCACACTC-ATATGGACT 119
Query 434 C-TTATGGCATAGGATACAA--CA-A------TAAGGGGAGTTACAAGATCTTTGCTTTT 483
| || |||| |||||||||| || | ||||||||||||||||||| ||||| |
Sbjct 120 CCTT-TGGCTTAGGATACAAATCATACAACAATAAGGGGAGTTACAAGATCGTTGCTAAT 178
Query 484 TGTGATCGGAAGGAAAACCACACCCAGAGATTGTTGACAA-T--C---C-ATGACTCTGC 536
| || |||||||||||||| |||| |||| |||||||||| | | | |||| | |||
Sbjct 179 TCTGGTCGGAAGGAAAACCCCACCAAGAGCTTGTTGACAAATGACAATCCATGAATTTGC 238
Query 537 CTCTGATGCGTGG 549
|||||||||||||
Sbjct 239 CTCTGATGCGTGG 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5