BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16590.1 Length=1125 Score E Sequences producing significant alignments: (Bits) Value Ahg318430 jgi|Araly1|318430|fgenesh1_pm.C_scaffold_3001446 1639 0.0 Ahg923036 jgi|Araly1|923036|scaffold_104317.1 147 2e-34 > Ahg318430 jgi|Araly1|318430|fgenesh1_pm.C_scaffold_3001446 Length=1137 Score = 1639 bits (887), Expect = 0.0 Identities = 1051/1129 (93%), Gaps = 16/1129 (1%) Strand=Plus/Plus Query 1 ATGCCGACGAAGCTTCCACT-GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCT 59 ||| |||| ||||||||| | |||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGTCGACAAAGCTTCCA-TCGGAGTTGGAGGATGAGATACTTTTTCGTGTTCCACCTCT 59 Query 60 ATCTCTCACACGCTTTAGAACAGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119 ||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 60 ATCTCTCACTCGATTTCGAACCGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119 Query 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAGTTCATATTACGGACCGAGAAAGA 179 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAATTCATCTTACGGACCGAGAAAGA 179 Query 180 TTCCAAGATCTATTCAATAGGCATCAATATCGATGACTCCTTAGAGGTGCGTGAGCTAAA 239 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 180 TTCCAAGATTTATTCAATAGGCATCAATCTCGATGACTCCTTAGAGGTGCGTGAGCTGAA 239 Query 240 CCTAGAAACTCAAGGTCCTAATAAGAAGCTTAAGGTATATCGAAACCTCTTTTATTGCGA 299 ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||| Sbjct 240 CCTAGAAACTCAAGGTCCTAAGAA-A--CTTAAGGTATATCGAAACCTCTTTTACTGCGA 296 Query 300 TGGTTTTTTGTTATGTCCTGCTTTGCTTGACGAGGTTGCTGTCTGGAATCCATGGTTGAG 359 || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 297 CGGGTTTTTGTTATGTCCTGCTTTGATTGACGAGGTTGCGGTCTGGAATCCATGGTTGAG 356 Query 360 AAAACAAACTAAATGGATCGAGCCTAAGAGGAGTAGATTCAATTTATATGGACTAGGGTA 419 | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 357 ACAACAAACTAAATGGATAGAGCCTAAGAGGACTAGATTCAATTTATATGGACTAGGGTA 416 Query 420 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTGGTTATGGTTACAGTAG 479 ||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||| Sbjct 417 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTAGCTACGGTTACTGTAG 476 Query 480 TGAAATAAACGGTAGTTACAACAGAATTAACCCGAGAGTTTCGGTATTT--GAGTTTGAA 537 ||||||| |||||||| ||| || ||| ||||| ||||||||| |||| ||||||||| Sbjct 477 TGAAATAGACGGTAGTAACACCAAAATCAACCCAAGAGTTTCG--ATTTACGAGTTTGAA 534 Query 538 ACTAATGCGTGGAAGGATCTTAAGTTTGGTTTATTTGATTGGCACCTAAGATCTCCCCGG 597 |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 535 ACTAATATGTGGAAGGATCTTAAGTTTGGTTTACTTGATTGGCACTTAAGATCTCCCCGG 594 Query 598 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTGTGAGGTGTGAAAGTGGTGGT 657 ||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||| Sbjct 595 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTATAAGATGTGAGAGTGGTGGT 654 Query 658 GATGGTTTTATCCAAAGCTTTGACTTTTCGAG-G-GAGATGTTCGAGCCCTTTTGTCTCT 715 ||| |||||||||||||||||||||||||||| | ||||| || || ||||||||||||| Sbjct 655 GATTGTTTTATCCAAAGCTTTGACTTTTCGAGTGAGAGAT-TT-GAACCCTTTTGTCTCT 712 Query 716 TGCCATGTAAGAACGATTTTGGCGATACTCAAATCCTTGAGGTTTTTAGGGGAGATCGGC 775 |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| | Sbjct 713 TGCCGTGTAAGAACGATCTTGGCGATACTCAAATCCTTGAGGTGTTTAGGGGAGATCGAC 772 Query 776 TATCTGTGTTGGAACAATGCCCGACAACAAATAAGATCAAGATTTGGGTGACTAAGAACA 835 | || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 773 TTTCAGTGTTGGAACAATGCGTGACAACAAAGAAGATCAAGATTTGGGTGACTAAGAACA 832 Query 836 AGATTAGTGGAGATAGGAAGGAGCTTGTGTCGTGGAGACTGTTAATGACAGTGTCGATAC 895 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 833 GGATTAGTGGAGATAGGAAGGAGCTTGTCTCGTGGAGACTGTTAATGACTGTGTCGATAC 892 Query 896 CAAACTTCCCGAGATTACAAGATC-T-TT-ACTCTAATTCTCAGCCGAGTTACTTCATGG 952 |||||||||||||||||||||| | | || |||||||||||||||||||||||||||||| Sbjct 893 CAAACTTCCCGAGATTACAAGACCATATTTACTCTAATTCTCAGCCGAGTTACTTCATGG 952 Query 953 ATAACAATGATGACAAGAGGCTCATCGTGTGTACTTGTGATGAAAGTGGTAAGCCTTGCA 1012 ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| Sbjct 953 ATAACAATGATGACAAGAGGCTCATTGTGTGTACTTGTGATGAAATTGGAAAGCCTTGCA 1012 Query 1013 TATACATTGTGAAGGGGGATAGGTTCAAGAAGATTCAAATGGGTTTTGAGGTTGAGCCTT 1072 | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1013 TCTACATTGTGAAGGGAGATAGGTTCAAGAAGATTCAAATGGATTTTGAGGTTGATCCTT 1072 Query 1073 GGCCTTTTCACCTTGTTTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1073 GGCCTTTTCACCTTGTCTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121 > Ahg923036 jgi|Araly1|923036|scaffold_104317.1 Length=1162 Score = 147 bits (79), Expect = 2e-34 Identities = 125/147 (85%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 21 GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCTATCTCTCACACGCTTTAGAAC 80 |||||| ||||| ||||||||||| |||||||||||| || ||||||| ||||| ||||| Sbjct 44 GGAGTTAGAGGAAGAGATACTTTTTCGTGTTCCACCTTTACCTCTCACTCGCTTGAGAAC 103 Query 81 AGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAGATTCATCA-ACAATCACTTGG 139 |||||||||||||||||||||||||||||||| ||||||| || | | || ||||||| Sbjct 104 CGTTTGCAAACGATGGAACACACTTTTCAACGAAAAGAGATTTATTAGA-AACCACTTGG 162 Query 140 CTTGCGTCCG-TCCTCAGTTCATATTA 165 || | | || |||||| ||||| ||| Sbjct 163 CTCGTG-CCTATCCTCAATTCATCTTA 188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41935208700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5