BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16590.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318430 jgi|Araly1|318430|fgenesh1_pm.C_scaffold_3001446 1639 0.0
Ahg923036 jgi|Araly1|923036|scaffold_104317.1 147 2e-34
> Ahg318430 jgi|Araly1|318430|fgenesh1_pm.C_scaffold_3001446
Length=1137
Score = 1639 bits (887), Expect = 0.0
Identities = 1051/1129 (93%), Gaps = 16/1129 (1%)
Strand=Plus/Plus
Query 1 ATGCCGACGAAGCTTCCACT-GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCT 59
||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCGACAAAGCTTCCA-TCGGAGTTGGAGGATGAGATACTTTTTCGTGTTCCACCTCT 59
Query 60 ATCTCTCACACGCTTTAGAACAGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119
||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTCTCACTCGATTTCGAACCGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAG 119
Query 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAGTTCATATTACGGACCGAGAAAGA 179
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 ATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAATTCATCTTACGGACCGAGAAAGA 179
Query 180 TTCCAAGATCTATTCAATAGGCATCAATATCGATGACTCCTTAGAGGTGCGTGAGCTAAA 239
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 180 TTCCAAGATTTATTCAATAGGCATCAATCTCGATGACTCCTTAGAGGTGCGTGAGCTGAA 239
Query 240 CCTAGAAACTCAAGGTCCTAATAAGAAGCTTAAGGTATATCGAAACCTCTTTTATTGCGA 299
||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 240 CCTAGAAACTCAAGGTCCTAAGAA-A--CTTAAGGTATATCGAAACCTCTTTTACTGCGA 296
Query 300 TGGTTTTTTGTTATGTCCTGCTTTGCTTGACGAGGTTGCTGTCTGGAATCCATGGTTGAG 359
|| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 297 CGGGTTTTTGTTATGTCCTGCTTTGATTGACGAGGTTGCGGTCTGGAATCCATGGTTGAG 356
Query 360 AAAACAAACTAAATGGATCGAGCCTAAGAGGAGTAGATTCAATTTATATGGACTAGGGTA 419
| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 ACAACAAACTAAATGGATAGAGCCTAAGAGGACTAGATTCAATTTATATGGACTAGGGTA 416
Query 420 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTGGTTATGGTTACAGTAG 479
||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||
Sbjct 417 TGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTAGCTACGGTTACTGTAG 476
Query 480 TGAAATAAACGGTAGTTACAACAGAATTAACCCGAGAGTTTCGGTATTT--GAGTTTGAA 537
||||||| |||||||| ||| || ||| ||||| ||||||||| |||| |||||||||
Sbjct 477 TGAAATAGACGGTAGTAACACCAAAATCAACCCAAGAGTTTCG--ATTTACGAGTTTGAA 534
Query 538 ACTAATGCGTGGAAGGATCTTAAGTTTGGTTTATTTGATTGGCACCTAAGATCTCCCCGG 597
|||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 535 ACTAATATGTGGAAGGATCTTAAGTTTGGTTTACTTGATTGGCACTTAAGATCTCCCCGG 594
Query 598 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTGTGAGGTGTGAAAGTGGTGGT 657
||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||
Sbjct 595 ACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTATAAGATGTGAGAGTGGTGGT 654
Query 658 GATGGTTTTATCCAAAGCTTTGACTTTTCGAG-G-GAGATGTTCGAGCCCTTTTGTCTCT 715
||| |||||||||||||||||||||||||||| | ||||| || || |||||||||||||
Sbjct 655 GATTGTTTTATCCAAAGCTTTGACTTTTCGAGTGAGAGAT-TT-GAACCCTTTTGTCTCT 712
Query 716 TGCCATGTAAGAACGATTTTGGCGATACTCAAATCCTTGAGGTTTTTAGGGGAGATCGGC 775
|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 713 TGCCGTGTAAGAACGATCTTGGCGATACTCAAATCCTTGAGGTGTTTAGGGGAGATCGAC 772
Query 776 TATCTGTGTTGGAACAATGCCCGACAACAAATAAGATCAAGATTTGGGTGACTAAGAACA 835
| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 773 TTTCAGTGTTGGAACAATGCGTGACAACAAAGAAGATCAAGATTTGGGTGACTAAGAACA 832
Query 836 AGATTAGTGGAGATAGGAAGGAGCTTGTGTCGTGGAGACTGTTAATGACAGTGTCGATAC 895
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 833 GGATTAGTGGAGATAGGAAGGAGCTTGTCTCGTGGAGACTGTTAATGACTGTGTCGATAC 892
Query 896 CAAACTTCCCGAGATTACAAGATC-T-TT-ACTCTAATTCTCAGCCGAGTTACTTCATGG 952
|||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 893 CAAACTTCCCGAGATTACAAGACCATATTTACTCTAATTCTCAGCCGAGTTACTTCATGG 952
Query 953 ATAACAATGATGACAAGAGGCTCATCGTGTGTACTTGTGATGAAAGTGGTAAGCCTTGCA 1012
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||
Sbjct 953 ATAACAATGATGACAAGAGGCTCATTGTGTGTACTTGTGATGAAATTGGAAAGCCTTGCA 1012
Query 1013 TATACATTGTGAAGGGGGATAGGTTCAAGAAGATTCAAATGGGTTTTGAGGTTGAGCCTT 1072
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1013 TCTACATTGTGAAGGGAGATAGGTTCAAGAAGATTCAAATGGATTTTGAGGTTGATCCTT 1072
Query 1073 GGCCTTTTCACCTTGTTTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1073 GGCCTTTTCACCTTGTCTATGTTCCTAGTTTGGTTCCTATTCCTTTAGC 1121
> Ahg923036 jgi|Araly1|923036|scaffold_104317.1
Length=1162
Score = 147 bits (79), Expect = 2e-34
Identities = 125/147 (85%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 21 GGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCTATCTCTCACACGCTTTAGAAC 80
|||||| ||||| ||||||||||| |||||||||||| || ||||||| ||||| |||||
Sbjct 44 GGAGTTAGAGGAAGAGATACTTTTTCGTGTTCCACCTTTACCTCTCACTCGCTTGAGAAC 103
Query 81 AGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAGATTCATCA-ACAATCACTTGG 139
|||||||||||||||||||||||||||||||| ||||||| || | | || |||||||
Sbjct 104 CGTTTGCAAACGATGGAACACACTTTTCAACGAAAAGAGATTTATTAGA-AACCACTTGG 162
Query 140 CTTGCGTCCG-TCCTCAGTTCATATTA 165
|| | | || |||||| ||||| |||
Sbjct 163 CTCGTG-CCTATCCTCAATTCATCTTA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5