BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16600.1 Length=1917 Score E Sequences producing significant alignments: (Bits) Value Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447 2625 0.0 Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1 215 1e-54 > Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447 Length=1893 Score = 2625 bits (1421), Expect = 0.0 Identities = 1721/1860 (93%), Gaps = 43/1860 (2%) Strand=Plus/Plus Query 1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACC 60 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGACGATGCTATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGGAGACC 60 Query 61 ACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACC 120 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 61 ACCGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACC 120 Query 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180 Query 181 TT-GAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGC 239 || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 TTGGAA-TGGATGCGTAAGAAAGAAAAAAGAAGCAGGCATTGTTTGGGAGGGATATTAGC 239 Query 240 AGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTT 299 |||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| Sbjct 240 AGATGATCAGGGACTTGGTAAAACAATCTCTACCATCTCTCTTATTCTATTACAAAAGTT 299 Query 300 GAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTC-AAAACTCTGGTGGTACATTGATTG 358 |||||||||||||||||||| ||| |||||| ||| |||| | |||||||||||| |||| Sbjct 300 GAAGTCACAATCAAAGCAGAAAAAACGAAAAAGTCGAAAA-TTTGGTGGTACATTAATTG 358 Query 359 TTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 359 TTTGTCCAGCAAGTGTTGTTAAGCAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418 Query 419 AACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCC-AACAGAA 477 ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || |||| Sbjct 419 AACACAAGCTCTCTGTTTTAGTCTACCATGGATCTCGCAGAACCAAAGATCCTAA-AGAA 477 Query 478 ATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAA 537 |||||| | ||||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 478 TTAGCAAAACATGATGTCGTCGTGACAACTTACGCTATTGTTACAAATGAAGTTCCACAA 537 Query 538 AACCCTATGCTGAATCGTTATGATAGT---A-T-----GAGAGGCAGAGAAAGCCTTGAC 588 |||||| ||||||||| |||||||||| | | |||||||||||||||| |||| Sbjct 538 AACCCTCTGCTGAATCTTTATGATAGTAGGAGTAACAAGAGAGGCAGAGAAAGCTTTGAA 597 Query 589 GGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 648 ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GGATCTAGTCTGATTCAGTCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 657 Query 649 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTT 708 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 658 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCTTAATTGCAAAAGCTTGTTTC 717 Query 709 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGAC 768 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 718 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATACAGAACAAAGTAGAC 777 Query 769 GATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 828 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 778 GATCTTTATAGCTATTTCAGGTTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 837 Query 829 CACCAAAGAATCAAAGCTCCAATTGA-TAAAAAGCC-TCTTCATGGTTACAAGAAGCTTC 886 ||| |||||||||| ||||||||| | ||||| ||| |||| |||||||||||||||||| Sbjct 838 CACGAAAGAATCAAGGCTCCAATT-ACTAAAA-GCCCTCTTTATGGTTACAAGAAGCTTC 895 Query 887 AAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAG-A-A-TGGTCTTTCTACAGGA 943 ||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||| Sbjct 896 AAGCTATTCTAAGGGGTATAATGTTACGCCGCACCAAAGTAGAATGGTCTTTCTACAGGA 955 Query 944 AGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATG 1003 ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 956 AGCTTGAATTGTATTCACGTTTGAAGTTCGAGGAATATGCTGCTGATGGGACTTTGCATG 1015 Query 1004 AACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCAC 1063 |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| Sbjct 1016 AACACATGGCTTATCTTTTGCTGATGCTCTTGCGACTACGCCAAGCTTGTGACCATCCAC 1075 Query 1064 AACTTGTTAACGGATATAGTCACTCAGATACTACAAGAA-AAATGTCAGATGGAGTTCGA 1122 |||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| | Sbjct 1076 AACTTGTTAAAGGATATAGTCACTCAGATACTATT-GAAGAAATGTCAGATGAAGTTATA 1134 Query 1123 GTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACC 1182 ||||| ||||||||| || | |||||||||||||||||||||||||||||||| |||| | Sbjct 1135 GTAGCACCTAGAGAGGATTTTATCATGTTCCTCGATCTCTTGAAATTATCCTCTACCATC 1194 Query 1183 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTT 1242 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1195 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTATGTGGCCATGTGTTT 1254 Query 1243 TGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAAT 1302 || |||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||| Sbjct 1255 TGCTATGAGTGTGTGTCTGGAAACATTAATGGGGATGACAAAACGTGCCCTGCACTTAAT 1314 Query 1303 TGCCA-CAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCAT 1361 ||| | || | ||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1315 TGC-AGCAACGAGCTTAAACATGATGTTGTTTTCACAGAATCTGCAGTTAGAAGCTGCAT 1373 Query 1362 CAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTT--GCATCAAGGCGAGTTTAT 1419 ||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||| Sbjct 1374 CAACGATTATGATGATCCTCAAGATAAAAATGCTTTAGTTATGCTTCAAGGCGACTTTAT 1433 Query 1420 TTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCC 1479 ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1434 TTCATCGAAAATCAAAGCTGTGATAGAGCTTCTTCAGTCGCTTGCACAGCAAGGCAGTCC 1493 Query 1480 AGACACTCCACCAATAAAGACAATAGTAT-C----AGTGGACTGGTATGTGCGA-TG-T- 1531 ||||||||||||||||||||||||||| | | ||||||||| |||||| | || | Sbjct 1494 AGACACTCCACCAATAAAGACAATAGTGTTCTCTCAGTGGACTG--ATGTGCAAGTGATG 1551 Query 1532 -TGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATT 1590 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1552 CTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCATGTTATT 1611 Query 1591 CTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGT 1650 ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1612 CTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATCGT 1671 Query 1651 ATCGGACAAACTCG-AGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGA 1709 |||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||| Sbjct 1672 ATCGGACAAACTCGGA-CTGTTACAGTTACTCGTATTGCCATCAAAAATACCGTTGAGGA 1730 Query 1710 ACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGaaaa 1769 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1731 ACGAATTTTGACTCTTCAGGAACGTAAGAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1790 Query 1770 aaaCTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTT-TTT 1828 | ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 1791 TCA-TGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAATATCTATTTGTTT 1849 > Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1 Length=3385 Score = 215 bits (116), Expect = 1e-54 Identities = 195/232 (84%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 62 CTGTTAACGA-GAG-GG-TCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGA 118 ||| |||||| ||| || | | |||||||||||| |||| ||| |||| ||||||| | Sbjct 740 CTGATAACGATGAGAGGTTGGTTTATCAGGCTGCACTACAGGATTTGAATCAACCCATTA 799 Query 119 CCGAAAAG-GATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATT 177 ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 800 CCG-AAAGCGATCTACCTCCTGGTGTTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATT 858 Query 178 GCATTGA-ACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATT 236 |||||| | |||||| | |||| |||| |||||| ||||| |||||| ||| | Sbjct 859 GCATTGGCA-TGGATGTTTCAGAAGGAAACAAGAAGTTTTAACTGTGCGGGAGGAATACT 917 Query 237 AGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCT-CTCTTATCCT 287 |||||||||||||||||||||||| ||| |||||||||| | |||||||||| Sbjct 918 AGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGAT-TGCTCTTATCCT 968 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72028653295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5