BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16600.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447 2625 0.0
Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1 215 1e-54
> Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447
Length=1893
Score = 2625 bits (1421), Expect = 0.0
Identities = 1721/1860 (93%), Gaps = 43/1860 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATACAATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGAAGACC 60
||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGACGATGCTATGGACATGAGTTCAGGTAGTGATGAAGAAGTACAAGAAGAGGAGACC 60
Query 61 ACTGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGACC 120
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 ACCGTTAACGAGAGGGTCATCTATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACC 120
Query 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAAGGATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCA 180
Query 181 TT-GAACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATTAGC 239
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTGGAA-TGGATGCGTAAGAAAGAAAAAAGAAGCAGGCATTGTTTGGGAGGGATATTAGC 239
Query 240 AGATGATCAGGGACTTGGTAAAACGATCTCGACGATCTCTCTTATCCTGTTACAAAAGTT 299
|||||||||||||||||||||||| ||||| || ||||||||||| || |||||||||||
Sbjct 240 AGATGATCAGGGACTTGGTAAAACAATCTCTACCATCTCTCTTATTCTATTACAAAAGTT 299
Query 300 GAAGTCACAATCAAAGCAGAGAAAGCGAAAAGGTC-AAAACTCTGGTGGTACATTGATTG 358
|||||||||||||||||||| ||| |||||| ||| |||| | |||||||||||| ||||
Sbjct 300 GAAGTCACAATCAAAGCAGAAAAAACGAAAAAGTCGAAAA-TTTGGTGGTACATTAATTG 358
Query 359 TTTGTCCAGCAAGTGTTGTAAAACAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTGTCCAGCAAGTGTTGTTAAGCAATGGGCAAGAGAAGTTAAAGAGAAGGTTTCTGATG 418
Query 419 AACACAAACTCTCTGTTTTAGTCCACCATGGATCTCACAGAACCAAAGATCC-AACAGAA 477
||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || ||||
Sbjct 419 AACACAAGCTCTCTGTTTTAGTCTACCATGGATCTCGCAGAACCAAAGATCCTAA-AGAA 477
Query 478 ATAGCAATATATGATGTGGTCATGACAACTTACGCCATTGTTACAAATGAAGTTCCACAA 537
|||||| | ||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TTAGCAAAACATGATGTCGTCGTGACAACTTACGCTATTGTTACAAATGAAGTTCCACAA 537
Query 538 AACCCTATGCTGAATCGTTATGATAGT---A-T-----GAGAGGCAGAGAAAGCCTTGAC 588
|||||| ||||||||| |||||||||| | | |||||||||||||||| ||||
Sbjct 538 AACCCTCTGCTGAATCTTTATGATAGTAGGAGTAACAAGAGAGGCAGAGAAAGCTTTGAA 597
Query 589 GGATCGAGTTTGATTCAGCCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 648
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGATCTAGTCTGATTCAGTCTCACGTTGGTGCACTAGGAAGAGTTAGGTGGTTGAGAGTA 657
Query 649 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCCTAATTGCAAAAGCTTGTTTT 708
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GTATTAGATGAAGCTCATACAATTAAAAACCATAGAACCTTAATTGCAAAAGCTTGTTTC 717
Query 709 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATAAAGAACAAAGTAGAC 768
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 AGCCTTAGAGCCAAAAGGAGATGGTGTTTGACTGGAACGCCGATACAGAACAAAGTAGAC 777
Query 769 GATCTTTATAGCTATTTCAGATTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 828
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GATCTTTATAGCTATTTCAGGTTTCTTAGATATCATCCATATGCCATGTGCAATTCATTT 837
Query 829 CACCAAAGAATCAAAGCTCCAATTGA-TAAAAAGCC-TCTTCATGGTTACAAGAAGCTTC 886
||| |||||||||| ||||||||| | ||||| ||| |||| ||||||||||||||||||
Sbjct 838 CACGAAAGAATCAAGGCTCCAATT-ACTAAAA-GCCCTCTTTATGGTTACAAGAAGCTTC 895
Query 887 AAGCTATTCTAAGGGGTATAATGTTGCGCCGCACCAAAG-A-A-TGGTCTTTCTACAGGA 943
||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct 896 AAGCTATTCTAAGGGGTATAATGTTACGCCGCACCAAAGTAGAATGGTCTTTCTACAGGA 955
Query 944 AGCTTGAATTGAATTCACGTTGGAAGTTTGAGGAATATGCTGCTGATGGGACTTTGCATG 1003
||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 956 AGCTTGAATTGTATTCACGTTTGAAGTTCGAGGAATATGCTGCTGATGGGACTTTGCATG 1015
Query 1004 AACACATGGCTTATCTTTTGGTGATGCTTTTGCGACTACGCCAAGCTTGTAACCATCCAC 1063
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 1016 AACACATGGCTTATCTTTTGCTGATGCTCTTGCGACTACGCCAAGCTTGTGACCATCCAC 1075
Query 1064 AACTTGTTAACGGATATAGTCACTCAGATACTACAAGAA-AAATGTCAGATGGAGTTCGA 1122
|||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| |
Sbjct 1076 AACTTGTTAAAGGATATAGTCACTCAGATACTATT-GAAGAAATGTCAGATGAAGTTATA 1134
Query 1123 GTAGCCCCTAGAGAGAATCTAATCATGTTCCTCGATCTCTTGAAATTATCCTCAACCACC 1182
||||| ||||||||| || | |||||||||||||||||||||||||||||||| |||| |
Sbjct 1135 GTAGCACCTAGAGAGGATTTTATCATGTTCCTCGATCTCTTGAAATTATCCTCTACCATC 1194
Query 1183 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTGTGTGGCCATGTGTTT 1242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1195 TGCTCTGTTTGTAGTGATCCACCAAAAGACCCTGTTGTTACTTTATGTGGCCATGTGTTT 1254
Query 1243 TGTTATGAGTGTGTGTCTGTAAACATTAACGGGGATAACAATACGTGCCCTGCACTTAAT 1302
|| |||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||
Sbjct 1255 TGCTATGAGTGTGTGTCTGGAAACATTAATGGGGATGACAAAACGTGCCCTGCACTTAAT 1314
Query 1303 TGCCA-CAGCCAGCTTAAACATGATGTTGTTTTCACTGAATCTGCAGTTAGAAGTTGCAT 1361
||| | || | ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1315 TGC-AGCAACGAGCTTAAACATGATGTTGTTTTCACAGAATCTGCAGTTAGAAGCTGCAT 1373
Query 1362 CAACGATTATGATGATCCTGAAGATAAAAATGCTTTAGTT--GCATCAAGGCGAGTTTAT 1419
||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 1374 CAACGATTATGATGATCCTCAAGATAAAAATGCTTTAGTTATGCTTCAAGGCGACTTTAT 1433
Query 1420 TTCATCGAAAATCCGAGCTGTGATAGAGATTCTTCAGTCGCTTGCAGAGCAAGGCAGTCC 1479
||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1434 TTCATCGAAAATCAAAGCTGTGATAGAGCTTCTTCAGTCGCTTGCACAGCAAGGCAGTCC 1493
Query 1480 AGACACTCCACCAATAAAGACAATAGTAT-C----AGTGGACTGGTATGTGCGA-TG-T- 1531
||||||||||||||||||||||||||| | | ||||||||| |||||| | || |
Sbjct 1494 AGACACTCCACCAATAAAGACAATAGTGTTCTCTCAGTGGACTG--ATGTGCAAGTGATG 1551
Query 1532 -TGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCAAGTCATGTCATT 1590
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1552 CTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCATGTTATT 1611
Query 1591 CTACTGGACCTATGGTGGAATCCAACAACAGAGGATCAAGCTATTGATCGAGCTCATCGT 1650
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1612 CTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATCGT 1671
Query 1651 ATCGGACAAACTCG-AGCTGTTACGGTCACTCGTATTGCCATCAAAAATACCGTTGAGGA 1709
|||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1672 ATCGGACAAACTCGGA-CTGTTACAGTTACTCGTATTGCCATCAAAAATACCGTTGAGGA 1730
Query 1710 ACGAATTTTGACTCTTCATGAACGTAAAAGGAACATTGTTGCATCTGCATTGGGTGaaaa 1769
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1731 ACGAATTTTGACTCTTCAGGAACGTAAGAGGAACATTGTTGCATCTGCATTGGGTGAAAA 1790
Query 1770 aaaCTGGCAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTCGAATATCTGTTT-TTT 1828
| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 1791 TCA-TGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAATATCTATTTGTTT 1849
> Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1
Length=3385
Score = 215 bits (116), Expect = 1e-54
Identities = 195/232 (84%), Gaps = 9/232 (4%)
Strand=Plus/Plus
Query 62 CTGTTAACGA-GAG-GG-TCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGA 118
||| |||||| ||| || | | |||||||||||| |||| ||| |||| ||||||| |
Sbjct 740 CTGATAACGATGAGAGGTTGGTTTATCAGGCTGCACTACAGGATTTGAATCAACCCATTA 799
Query 119 CCGAAAAG-GATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATT 177
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 800 CCG-AAAGCGATCTACCTCCTGGTGTTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATT 858
Query 178 GCATTGA-ACTGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATT 236
|||||| | |||||| | |||| |||| |||||| ||||| |||||| ||| |
Sbjct 859 GCATTGGCA-TGGATGTTTCAGAAGGAAACAAGAAGTTTTAACTGTGCGGGAGGAATACT 917
Query 237 AGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCT-CTCTTATCCT 287
|||||||||||||||||||||||| ||| |||||||||| | ||||||||||
Sbjct 918 AGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGAT-TGCTCTTATCCT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5