BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16630.1
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479128 jgi|Araly1|479128|fgenesh2_kg.3__1829__AT3G16630.2 4405 0.0
Ahg890682 jgi|Araly1|890682|Al_scaffold_0007_2668 1851 0.0
> Ahg479128 jgi|Araly1|479128|fgenesh2_kg.3__1829__AT3G16630.2
Length=2966
Score = 4405 bits (2385), Expect = 0.0
Identities = 2834/3036 (93%), Gaps = 90/3036 (3%)
Strand=Plus/Plus
Query 1 AAATCTTCTTCAACGCCCCTCTCTTTCTCATCTCTCTGCGCCTAACGTCGCTTAC-G--G 57
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1 AAAACTTCTTCAACGCCCCTCTGTTTCTCATCTCTCTGCGCCTAACGTCGCTTACGGAAG 60
Query 58 AAGAAGACGAAAATTTTGAACAGAAGctctctctctctatctctctatctctctatctct 117
|||||||||||| ||||||||||||| ||||||||| | | || || |
Sbjct 61 AAGAAGACGAAATTTTTGAACAGAAG--CTCTCTCTC-A-------A----TC--TC-C- 102
Query 118 aACGCTATTCGATGTGCGTAAATTAGGGTTCTTCACTCGTCGGATCTGATTGTATATTGT 177
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 103 AACGCTAAACGATGTGCGTCTCTTAGGGCTCTTCACTCGTCGGATCTGATTGTATATTCT 162
Query 178 GAAAATCTCAGATCTCAGATCTCTTATCTAACACCGTTGCGTGTCTTCGTTTCCTTCT-G 236
| ||| |||||||| | | || || |||||||||||||||||||||||||||||
Sbjct 163 -TAGATCACAGATCTC---T-T-TTTTC-AACACCGTTGCGTGTCTTCGTTTCCTTCTCT 215
Query 237 ATTTTGAAGGAGGTGAAGCAAAGTCGGGAGCTGTACATTTCCGCTTTCATGTTCTGTGTT 296
|||| ||| || |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 216 ATTTCGAAAGAAGTGAAG-AAAGTTGGGAGCTGTACATTTCCGCTTTCATGTTCTGTGTT 274
Query 297 GAATCCGAATTCTCTCCACATTAGTTGTTTTTACAGATCTCCGAAGTTGGCTCCTCAAAG 356
||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 275 GAATCCGAATTCTCTCCAC---A--------CACAGATCTCCCAAGTTGGCTCCTCAAAG 323
Query 357 AAGATCACAGCGCCTCATGGGCGGCCAAATGCAGCAAAACAATGCTGCGGCTGCGACGGC 416
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 324 AAGATCACAGCGCCACATGGGCGGCCAAATGCAGCAAAGCAATGCTGCGGCTGCGACGGC 383
Query 417 GCTTTACGATGGGGCTTTACCCACTAATGACGCAGGAGATGCAGTCATGGCACGGTGGCT 476
||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 384 GCTATACGATGGGGCTTTACCCTCAAATGACGCAGGAGATGCAGTCATGGCACGGTGGCT 443
Query 477 TCAATCCGCTGGTTTGCAGCATTTGGCGTCTCCTGTTGCTTCTACAGGCAATGATCAGCG 536
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 444 TCAATCCGCTGGATTGCAGCATTTGGGGTCTCCGGTTGCTTCTACAGGCAATGATCAGCG 503
Query 537 TCACCTCCCAAACCTTCTCATGCAGGGTTATGGAGCTCAGACTGCTGAAGAGAAACAAAG 596
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 504 TCATCTCCCAAACCTTCTCATGCAGGGTTATGGAGCACAGACCGCTGAAGAGAAACAAAG 563
Query 597 ACTGTTCCAACTAATGAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATAC 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACTGTTCAAACTAATGAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATAC 623
Query 657 ACCAACTGCTCACACATCAGCAGCTATGCCCTCTTCGGAAGGAtttttttCACCTGAGTT 716
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 624 ACCAACTGCTCAGACATCAGCAGCTATGCCCTCTTCGGAAGGATTTTTTTCACCTGACTT 683
Query 717 CAGAGGTGATTTTGGAGCAGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCT 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CAGAGGTGATTTTGGAGCTGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCT 743
Query 777 ATCTGAGCATGTGATTACCGAACCCTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAA 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 ATCTGAGCATGTGATTACCGAACCGTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAA 803
Query 837 AGAATTTGAAGAAGACTATAATTTGGCAGCTAATCGTCAACAGCGGCAACAGACAGAAGC 896
||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||
Sbjct 804 AGAATTTGAAGAAGACTATAATTTGCCAGCTAATCATCAACAACGTCAACAGACAGAAGC 863
Query 897 TGAACCTT-TGGGTTTATTGCCTAAAAGTGATAAAGAAAATAACAGTGTAGCCAAGATTA 955
|||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 864 TGAA-CTTGTGGGTTTATTGCCTAAGAGTGAAAAAGAAAATAACAGTGTAGCCAAGATTA 922
Query 956 AAGTAGTGGTAAGGAAAAGACCCCTAAACAAGAAAGAAACAGCTAAAAAGGAGGAGGATG 1015
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 923 AAGTAGTGGTAAGGAAAAGACCCCTAAACAAGAAAGAAACAGCTAGAAAGGAGGAGGATG 982
Query 1016 TCGTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAGAGTGAAGGTTGATTTGA 1075
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 983 TCGTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAAAGTGAAGGTGGATTTGA 1042
Query 1076 CTGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTTTCAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 CTGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTCTCAA 1102
Query 1136 ATGACGAGGTGTATCGGGCCACAATTGAGCCAATAATTCCCATTATTTTCCAGAGAACTA 1195
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1103 ATGACGAGGTGTATCGGGCCACAATTGAGCCGATAATTCCAATTATTTTCCAGAGAACTA 1162
Query 1196 AAGCTACATGCTTTGCATATGGCCAAACAGGTAGTGGTAAGACATTTACAATGAAACCAT 1255
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1163 AAGCTACATGTTTTGCATATGGTCAAACAGGTAGTGGTAAGACATTCACAATGAAACCAC 1222
Query 1256 TACCTATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATACAGCAATC 1315
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TACCCATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATACAGCAATC 1282
Query 1316 AGAGGTTTAAATTGTGGCTCAGCTATTTTGAGATATATGGTGGAAAGCTGTTCGATCTTC 1375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1283 AGAGGTTTAAATTGTGGCTCAGCTATTTTGAAATATATGGTGGAAAGCTGTTCGATCTTC 1342
Query 1376 TCAGTGAGAGAAAGAAACTTTGCATGCGAGAAGATGGTAGACAGCAAGTTTGCATTGTTG 1435
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1343 TCAGTGAGAGAAAGAAACTTTGCATGAGAGAAGATGGTAGACAGCAAGTTTGCATTGTTG 1402
Query 1436 GCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAGAAAGGAA 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1403 GCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAAAAAGGAA 1462
Query 1496 ATGCCGAAAGGAGCACAGGTTCAACTGGAGCAAATGAGGAATCTTCTAGATCGCATGCCA 1555
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1463 ATGCTGAAAGGAGCACAGGGTCAACTGGAGCAAATGAGGAATCTTCTAGATCACATGCTA 1522
Query 1556 TCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATAATG 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 TCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATAATG 1582
Query 1616 ATAGTAATGAATTGCCTGGGAAAGTTGTGGGAAAGATTTCTTTCATTGACCTTGCTGGCA 1675
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 ATGGTAATGAATTGCCAGGGAAAGTTGTGGGAAAGATTTCTTTCATTGACCTTGCTGGCA 1642
Query 1676 GTGAAAGAGGTGCAGACACCACAGACAATGATCGCCAGACAAGGATTGAAGGCGCAGAAA 1735
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1643 GTGAAAGAGGTGCAGACACTACAGACAATGACCGTCAGACAAGGATTGAAGGCGCAGAAA 1702
Query 1736 TCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAGCTAC 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAGCTAC 1762
Query 1796 ATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGAAACT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 ATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGAAACT 1822
Query 1856 CAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACCCTCA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 CAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACCCTCA 1882
Query 1916 ATACTCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAAGAAAG 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 ATACTCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAAGAAAG 1942
Query 1976 ATCAAACTGCGAATTCAATGCCTCCGGTTAATAAGGATCCTTTGTTGGGCCCAAATGATG 2035
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1943 ATCAAACTGCCAATTCAATGCCTCCGGTTAATAAGGATGCTTTGTTAGGCCCAAATGATG 2002
Query 2036 TAGAAGATGTCTTTGAGCCTCCACAGGAAGTGAATGTACCAG-AAACCAGGAGGAGGGTG 2094
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2003 TAGAAGATGTCTTTGAGCCTCCACAGGAAGTGAATGTAC-AGGAAACCAGGAGGAGGGTG 2061
Query 2095 GTCGAGAAGGACAGCAACAGC-AGTACGTCGGGTATTGACTTCAGACAGCCTACAAATTA 2153
||||||||||||||||||| | | |||||| |||||||| || |||||||||||||||||
Sbjct 2062 GTCGAGAAGGACAGCAACA-CTACTACGTCAGGTATTGAGTTTAGACAGCCTACAAATTA 2120
Query 2154 TCGAGAGGAAAGTGGAATCCCATCATTCTCAATGGACAAGGGAAGATCAGAGCCGAACAG 2213
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 2121 TCGAGAGGAAAGTGGAATCCCATCATTCTCGATGGACAAGGGAAGATCAGAGATGAATAC 2180
Query 2214 TTCTTTTGCTGGCTCCACTAGTCAGAGAAACAACATTTCTTCATATCCCCAAGAAACTTC 2273
|||||||| |||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 2181 TTCTTTTGGTGGCTCCACTAGTCAGAGGAACCACATGTCTTCATATCCCCAAGAAACTTC 2240
Query 2274 AGACCGTGAAGAGAAAGTAAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGCGGGAAGA 2333
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2241 GGGCCGTGAAGAGAAAGTGAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGCGGGAAGA 2300
Query 2334 AAAACCAGACAGACCACAAAATTGGTCTAAAAGAGATGTCAGTTCGTCGGATATCCCTAC 2393
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2301 AAAGCCAGACAGACCACAAAACTGGTCTAAAAGAGATGTCAGTTCATCGGATATCCCTAC 2360
Query 2394 CTTGACAAATTTTAGACAGAACGCAAGTGAAACTGCTTCAAGGCAATATGAAACCGCTTC 2453
|||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 2361 CTTGACAAATTTTAGACAGAACACAAGTGAAACTGCTTCAAGGCAAT------C---T-- 2409
Query 2454 AAGGCAATATGAAACCGACCCTTCGCTTGATGAAAACCTCGATGCACTGCTTGAGGAAGA 2513
| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2410 --G--AA-A-----CCGACCCTTCGCTTGATGAAAACCTCGATGCACTGCTTGAGGAAGA 2459
Query 2514 AGAAGCTCTGATTGCAGCGCACAGAAAAGAAATTGAGGATACAATGGAGATTGTTCGCGA 2573
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 AGAAGCTCTGATTGCAGCACACAGAAAAGAAATTGAGGATACAATGGAGATTGTTCGCGA 2519
Query 2574 GGAAATGAAACTTCTAGCGGAGGTGGACCAACCGGGAAGCATGATAGAAAACTATGTGAC 2633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 GGAAATGAAACTTCTAGCGGAGGTGGACCAACCGGGAAGCATGATAGAAAACTATGTGAC 2579
Query 2634 GCAACTGAGCTTTGTGTTGTCCCGGAAAGCAGCAGGGCTAGTCAGTCTTCAAGCCAGGCT 2693
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2580 GCAACTAAGCTTTGTGCTGTCCCGGAAAGCAGCAGGGCTAGTCAGTCTTCAAGCGAGGCT 2639
Query 2694 TGCTCGGTTCCAACACCGTCTCAAGGAACAAGAAATACTGAGCCGTAAGAGAGTTCCTCG 2753
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2640 TGCTCGGTTCCAACATCGTCTTAAGGAACAAGAAATACTGAGCCGTAAGAGAGTTCCTCG 2699
Query 2754 GTAGTTGGTAGAAGAAGGAAAACCAAAAGTGTGGTGTTGTTTAAGTGTG--AAAGGTTGG 2811
|||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||
Sbjct 2700 ATAGTTGGTAGAAGAAGGAAA-CCAAAAGTGTGTTGTTGTT-AAGTGTGTGAAAGGTTC- 2756
Query 2812 TTGGG------TGATCTCTTCTTATATATGACAAAGAATGACAGAAATGTCCTTCATGTT 2865
||||| |||| ||||||| || || ||||||||| ||||||||||||| ||||
Sbjct 2757 TTGGGACAAGGTGATATCTTCTT-TA-AT-ACAAAGAAT--CAGAAATGTCCTTG-TGTT 2810
Query 2866 TGTGAATTTGGGCatttctttccttttatttttg-aatctttatt-ataaagttatacct 2923
|||||| ||| |||||| ||||||||||||||| |||||| | | ||||| ||||||||
Sbjct 2811 TGTGAAGTTGTGCATTTATTTCCTTTTATTTTTTTAATCTTAAATCATAAAATTATACCT 2870
Query 2924 tttgtgtttcttatttttctcttcTCCTCTATCCTCCCAGAAA-GCTGGATACTGTCAAT 2982
|||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||||||||
Sbjct 2871 TTTGTGTTTCCTATTTTTCTCTTCTCTTCTATCCTCCCAAAAAAGGTGGATACTGTCAAT 2930
Query 2983 GTGAATCAAACTCT-TT-TATCAATCAACTGAAAAA 3016
|||||||||||||| || ||| ||||||||||||||
Sbjct 2931 GTGAATCAAACTCTATTCTATTAATCAACTGAAAAA 2966
> Ahg890682 jgi|Araly1|890682|Al_scaffold_0007_2668
Length=2451
Score = 1851 bits (1002), Expect = 0.0
Identities = 1761/2115 (83%), Gaps = 102/2115 (5%)
Strand=Plus/Plus
Query 373 ATGGGCGGCCAAATGCAGCAAAAC-AATGCTGCGGCTGCGACGGCGCTTTACGATGGGGC 431
||||||||||||||||||| | || ||||||||||||||||||||||| || || ||
Sbjct 1 ATGGGCGGCCAAATGCAGC-AGACTAATGCTGCGGCTGCGACGGCGCTGTATGACAATGC 59
Query 432 TTTACCCACTAATGACGCAGGAGATGCAGTCATGGCACGGTGGCTTCAATCCGCTGGTTT 491
||| || ||||| || || ||||| || |||||||||||||| || || ||||||||
Sbjct 60 AGGACCTACAAATGAGGCTGGCGATGCTGTTATGGCACGGTGGCTCCAGTCTGCTGGTTT 119
Query 492 GCAGCATTTGGCGTCTCCTGTTGCTTCTACAGGCAATGATCAGCGTCACCTCCCAAACCT 551
||||||| ||||||| ||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 120 GCAGCATCTGGCGTCACCTGTTGCTTCTACAGGCATTGATCAGCGCCATCTCCCAAACCT 179
Query 552 TCTCATGCAGGGTTATGGAGCTCAGACTGCTGAAGAGAAACAAAGACTGTTCCAACTAAT 611
|||||||||||||||||||| || |||||||||||||| |||||||| ||| || ||||
Sbjct 180 GCTCATGCAGGGTTATGGAGCACAAACTGCTGAAGAGAAGCAAAGACTATTCAAATTAAT 239
Query 612 GAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATACACCAACTGCTCACAC 671
||||||||| ||||| |||||||| ||||||||||| | |||||||| |||| ||| ||
Sbjct 240 GAGAAATCTTAATTTCAATGGGGAATCGACTTCTGAGCCGTATACACCCACTGGTCAAAC 299
Query 672 ATCAGCAGCTATGCCCTCTTCGGAAGGAtttttttCACCTGAGTTCAGAGGTGATTTTGG 731
|||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||| |||||
Sbjct 300 ATCAGCAGCTTTGCCCTCTTCGGATGGATTTTATTCACCTGAATTCAGAGGTGACTTTGG 359
Query 732 AGCAGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCTATCTGAGCATGTGAT 791
||| || || | |||||||| ||||||||||| |||||||| ||||| |||||| ||||
Sbjct 360 AGCTGGGTTGCTAGATCTTCACGCAATGGATGACACAGAGCTGCTATCCGAGCATATGAT 419
Query 792 TACCGAACCCTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAAAGAATTTGAAGAAGA 851
| | |||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 420 TTCTGAACCCTTTGAGCCATCACCTTTCATGCCTAGTGTCAATCAAGCATTTGAAGAAGA 479
Query 852 CTATAATTTGGCAGCTAATCGTCAACAGCGGCAACAGACA-GAAGCTGAACCTTTGGGTT 910
| |||| || ||||||| || |||||| ||| || || || |||||||||| | | |
Sbjct 480 GTTTAATGTGCCAGCTAACCGGAAACAGCTACAAGAG-CAGGATGCTGAACCTTCGAGCT 538
Query 911 TA-TTGCCTAAAAGTGATAAAGAAA--A-T---------AACAGTGTAGCCAAGATTAAA 957
| || || | ||||| ||||||| | | |||| ||||||||| ||||||
Sbjct 539 CATTTTCC-AGGAGTGAAAAAGAAAGTAGTGGAAGAGAGAACAATGTAGCCAAAATTAAA 597
Query 958 GTAGTGGTAAGGAAAAGACCCCTAAACAAGAAA-GAAACAGCTAAAAAGGAGGAGGATGT 1016
|||||||||||||| ||||||||||| || ||| ||||| || ||||||||||| ||| |
Sbjct 598 GTAGTGGTAAGGAAGAGACCCCTAAATAA-AAAGGAAACTGCCAAAAAGGAGGACGATAT 656
Query 1017 CGTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAGAG-TGAAGGTTGATTTGA 1075
|||||| |||||| |||||||||||||||| ||||| ||| || ||||||| |||||||
Sbjct 657 CGTGACTGTATCTAATAATTCTTTGACTGTTCATGAAACCA-AGTTGAAGGTGGATTTGA 715
Query 1076 CTGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTTTCAA 1135
|||||||| |||||| ||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 716 CTGCTTATATGGAAAGGCATGAGTTTTGCTTTGATGCTGTTCTGGATGAGCATGTTTCAA 775
Query 1136 ATGACGAGGTGTATCGGGCCACAATTGAGCCAATAATTCCCATTATTTTCCAGAGAACTA 1195
|||||||||||||||||||||| || |||||||| ||||||| |||||||||||||| |
Sbjct 776 ATGACGAGGTGTATCGGGCCACTATAGAGCCAATTATTCCCACCATTTTCCAGAGAACCA 835
Query 1196 AAGCTACATGCTTTGCATATGGCCAAACAGGTAGTGGTAAGACATTT-ACAATGAAACCA 1254
|||||||||| ||||||||||| ||||||||||| |||||||| ||| ||||||||||||
Sbjct 836 AAGCTACATGTTTTGCATATGGTCAAACAGGTAGCGGTAAGAC-TTTCACAATGAAACCA 894
Query 1255 TTACCTATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATA-CAGCAA 1313
| |||||||| || ||| |||||||||||||| ||||| |||||||||||| | | |
Sbjct 895 CTGCCTATACGGGCTGTTCAAGATCTTATGAGGATGTTGAATCAACCAGTATATC-GTGA 953
Query 1314 TCAGAGGTTTAAATTGTGGCTCAGCTATTTTGAGATATATGGTGGAAAGCTGT-TCGATC 1372
||||||| |||| ||||||||||| |||||||||||||||||||||||| ||| | ||||
Sbjct 954 TCAGAGGCTTAAGTTGTGGCTCAGTTATTTTGAGATATATGGTGGAAAGTTGTAT-GATC 1012
Query 1373 TTCTCAGTGAGAGAAAGAAACTTTGCATGCGAGAAGATGGTAGACAGCAAGTTTGCATTG 1432
||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1013 TTCTCTCCGAGAGAAGGAAACTTTGTATGCGAGAAGATGGTAGACAACAAGTTTGCATTG 1072
Query 1433 TTGGCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAGAAAG 1492
||||||||||||| |||||||| || ||||| |||||||||||||||||||| || ||||
Sbjct 1073 TTGGCCTGCAAGAGTATGAAGTCTCGGATGTTCAAATTGTAAAGGATTTTATTGAAAAAG 1132
Query 1493 GAAATGCCGAAAGGAGCACAGGTTCAACTGGAGCAAATGAGGAATCTTCTAGATCGCATG 1552
| ||||| |||||||||||| |||||||| || ||||||||||| |||||||| ||||
Sbjct 1133 GGAATGCTTCAAGGAGCACAGGATCAACTGGCGCCAATGAGGAATCATCTAGATCACATG 1192
Query 1553 CCATCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATA 1612
| || | ||||||||||| || |||||||| ||||||||||| |||||||| || ||||
Sbjct 1193 CTATTTTGCAGCTTGTTGTCAAGAAGCATGTGGAGGTAAAAGAAACTAGACGAAGTAATA 1252
Query 1613 ATGATAGTAATGAATTGCCTGGGAAAGTTG-TGGGAAAGATTTCTTTCATTGACCTTGCT 1671
| ||||||||||||| | |||||||||| |||| |||||||||||||| || ||||||
Sbjct 1253 ACGATAGTAATGAATCACGAGGGAAAGTTGTTGGG-AAGATTTCTTTCATCGATCTTGCT 1311
Query 1672 GGCAGTGAAAGAGGTGCAGACACCACAGACAATGATCGCCAGACAAGGATTGAAGGCGCA 1731
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1312 GGCAGTGAAAGAGGTGCAGACACCACAGACAATGACCGCCAGACAAGGATTGAAGGTGCA 1371
Query 1732 GAAATCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAG 1791
|||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 1372 GAAATCAATAAGAGTCTCTTAGCTCTCAAAGAATGTATCCGTGCACTGGACAATGACCAG 1431
Query 1792 CTACATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGA 1851
|||||||| || || ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 1432 CTACATATTCCCTTCCGTGGAAGCAAGCTAACTGAAGTGCTCCGCGACTCATTTGTTGGA 1491
Query 1852 AACTCAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACC 1911
||||||||||| ||||||||||| ||||| |||||||| | |||||| ||||||||||||
Sbjct 1492 AACTCAAGAACTGTGATGATTTCATGCATTTCTCCAAACGAAGGATCATGTGAACATACC 1551
Query 1912 CTCAATAC-TCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAA 1970
|| ||||| | ||||||| || ||||| || |||||||||||||||||||| ||||||||
Sbjct 1552 CTTAATACAT-TAAGATACGCCGATCGGGTTAAAAGTCTATCTAAAAGTGGGAATAGCAA 1610
Query 1971 GAAAGATCAAACTGCGAATTCAATGCCTCCGGTTAATAAGGATC---CTTTG--TTG--- 2022
||| ||||||||| | |||| ||||||| | || ||||||| ||||| ||
Sbjct 1611 GAAGGATCAAACTTCCAATTTGTTGCCTCCAGCTACTAAGGATGTTTCTTTGGCTTCCTC 1670
Query 2023 ------GGCC-CAAATGATGTAGAAGATGTCTTTGAGCCTCCACAGGAAG-TGAATGTAC 2074
||| |||||||||||||||||||| ||||||||||||| ||| | |||||||
Sbjct 1671 TCAACTGGCTTCAAATGATGTAGAAGATGTCCTTGAGCCTCCACAAGAACCT-AATGTAC 1729
Query 2075 CAGAA-ACCAGGAGGAGGGTGGTCGAGAAGGACAGCAACAGCAGTACGTCGGGTATTGAC 2133
|| | || |||||||||| | || ||| ||||| || | ||| |||||||||||
Sbjct 1730 -AGGAGACGGGGAGGAGGGTAGA-GA-AAG-ACAGCTACT-C--TACTTCGGGTATTGAA 1782
Query 2134 TTCA-GACAGCCTACA-A--A---TT----AT--C-G---A------GAG-G-AAAGTGG 2168
|||| | |||||||| | | || || | | | ||| | |||||||
Sbjct 1783 TTCAAG-CAGCCTACGCATTACCCTTCTTCATATCCGGTCAACTTTAGAGAGGAAAGTGG 1841
Query 2169 AATCCCATC-ATTCTCAATGGACAAGGGAAGATCA-GAGCCGAACAGTTCTTTTG-CTGG 2225
|| ||||| || ||||||||||| |||||| || || ||| || |||||||| | ||
Sbjct 1842 CATACCATCGATA-TCAATGGACAAAGGAAGA-CAAGATACGAGCAATTCTTTTGGC-GG 1898
Query 2226 CTCCACTAGTCAGAGAAA-CAA-CAT-TTCTTCATATCCCCAAGAAACTTCAGACC-GTG 2281
|||||||||||| || | || ||| ||||| | || | |||| | |||||| | | |
Sbjct 1899 CTCCACTAGTCAAAGGATTCACTCATCTTCTT-AC-TCTC-AAGACAGTTCAGATCAG-G 1954
Query 2282 AAGAGAAAGTAAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGC-GGGAAGAAAAACCA 2340
|||| ||||| ||||| || ||||| |||||| |||||| || | |||| ||||||||
Sbjct 1955 AAGAAAAAGTGAAGAAGGTATCACCCCCTCGTAGGAAAGT-TTCCCGGGAGGAAAAACCT 2013
Query 2341 GACAGACCACAAAATTGGTCTAAAAGAGATGTCA---GTTCGTCGGATATCCCTACCTTG 2397
|| ||| | ||||| ||||| ||||||||||||| || | || ||| ||||| || |
Sbjct 2014 GAAAGAACTCAAAACTGGTCAAAAAGAGATGTCATCAGTGCATCTGATGTCCCTGCCACG 2073
Query 2398 ACAAATTTTAGACAG 2412
||||| | |||||||
Sbjct 2074 ACAAACTCTAGACAG 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114537366715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5