BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16640.1
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479130 jgi|Araly1|479130|fgenesh2_kg.3__1831__AT3G16640.1 1061 0.0
> Ahg479130 jgi|Araly1|479130|fgenesh2_kg.3__1831__AT3G16640.1
Length=870
Score = 1061 bits (574), Expect = 0.0
Identities = 740/816 (91%), Gaps = 27/816 (3%)
Strand=Plus/Plus
Query 31 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCGATTTTCGTTTATTCGCATCCATC---G- 86
||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
Sbjct 1 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCAATTTTCGTTAATTCACATCCATCGGAGA 60
Query 87 GAGAGAGA-AAA-CAATC-AATAAGCGACCATGTTGGTGTACCA-AGATCTTCTCACCGG 142
|||||||| ||| |||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 61 GAGAGAGATAAATAAATCAAATAAGCGACCATGTTGGTGTA-CACAGATCTTCTCACCGG 119
Query 143 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATCCTCTGGGA 202
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 120 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATTCTTTGGGA 179
Query 203 AGTAGAAGGAAAGTGGGTTACTGTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 262
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTAGAAGGAAAGTGGGTTACTCTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 239
Query 263 TGCTGAAGAAGGTGGTGAGGATGAAGGTGTTGATGACTCTACTCAAAAGGTTGTTGACAT 322
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 240 TGCTGAAGAAGGTGGTGAGGATGAGGGTGTTGATGACTCTGCTCAAAAGGTTGTTGACAT 299
Query 323 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCATCGCTTA 382
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCGTCGCTTA 359
Query 383 CATTAAGAAATACATTAAG-CTTTTGACACCCAAGCTCAGCGAAGAAGATCAAGCTGTC- 440
|||||||||||||| ||| | || |||||||||||||| ||||||| | || | ||
Sbjct 360 TATTAAGAAATACATCAAGTCGTT-GACACCCAAGCTCAACGAAGAACAGCAGGAA-TCC 417
Query 441 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTTT-TTGCTCCCCAGGCTCAGTGACTTCCA 499
||||||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||
Sbjct 418 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTACCTT-CTCCCCAAGCTCAAAGACCTCCA 476
Query 500 ATTCTTTGTTGGGGAGGGTATGCATGATGACAGCACTTTGGTCTTTGCTTACTACAAGGA 559
|||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 477 ATTCTTTGTTGGGGAGTCAATGCACGATGACAGCTCTTTGGTCTTTGCCTACTACAAGGA 536
Query 560 GGGTTCAACTAACCCAACATTTTTGTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTG 619
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 TGGTGCAACTAACCCAACATTTTTGTACTTCGCACATGGTTTGAAGGAGGTCAAGTGCTG 596
Query 620 AGAGAGAAGCTCTCGTTGGGTTACTGTGGTCGGTCGCAGCGACTCTCTAAGTTTATGTTT 679
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 597 AGAGAGAAGCTCTCTTTGGGTTACTCTGGTCGG-CGCAGCGACTCTCTAAGTTTATGTTT 655
Query 680 CTTTATATTGTC-CTGTGTTTCGTCGTCGTCCCCTATTAAAATTACCTGCCAGTTTACTT 738
|||||||||||| | ||||||||||||| ||| |||||||||||||| ||||||| |||
Sbjct 656 CTTTATATTGTCTC-GTGTTTCGTCGTC--CCC-TATTAAAATTACCTACCAGTTTGCTT 711
Query 739 TTCTCTCTTCTTGTTTTCTGTGTTGGAAGA-TTCTCAAGTTATTTATTCCGCAAAA-AAC 796
|| ||||||||| | | |||||||||| || | |||||||| | |||| |||| |||
Sbjct 712 TTGTCTCTTCTTCTCTCCTGTGTTGGATTTCTTTT-AAGTTATTGAATCCG-AAAACAAC 769
Query 797 GGTTTATCA-TTTACAATTAGTTGAATTTTGGTCGT 831
||||||||| ||| | ||||||||||||||||||||
Sbjct 770 GGTTTATCAGTTT-CTATTAGTTGAATTTTGGTCGT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35492435727
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5