BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16660.1

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318437 jgi|Araly1|318437|fgenesh1_pm.C_scaffold_3001453           767    0.0  


> Ahg318437 jgi|Araly1|318437|fgenesh1_pm.C_scaffold_3001453
Length=558

 Score =  767 bits (415),  Expect = 0.0
 Identities = 513/558 (92%), Gaps = 15/558 (3%)
 Strand=Plus/Plus

Query  76   ATGGCAATGTTAAAGAACAAACACATGACCGTCTCATTGATCTTGGTGTGTCTCGTTGTG  135
            ||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||| |||||
Sbjct  1    ATGGCAATGTTAAAGAACAAAAACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  60

Query  136  GTGTCTCCAATGGCTGAGGCTCAGcttggtc-t--tggtggtagtggtggt-ct--tggt  189
            ||||||||||||||||||||||||||||| | |  ||||||| ||||||||  |  ||||
Sbjct  61   GTGTCTCCAATGGCTGAGGCTCAGCTTGGACTTGGTGGTGGTGGTGGTGGTGGTGGTGGT  120

Query  190  ggtcttattgggggtc-t--t-g--ttg--gg-ggtctcggtggtctggttggtggtctt  240
            |||||||||||||||| |  | |  |||  || ||||| |||||||| || |||||||||
Sbjct  121  GGTCTTATTGGGGGTCTTGGTGGTCTTGTTGGTGGTCTTGGTGGTCTTGTCGGTGGTCTT  180

Query  241  gtagggggtATTCTCAATCTCGTCAATATCAATGGGGTTGTCTTTTGCTCTCTCAATGGT  300
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  GTTGGTGGTATTCTCAATCTCGTCAATATCAATGGGGTTGTCTTTTGCTCTCTCAATGGC  240

Query  301  GCTCCCAGTGGCACTTCCACTCCTGCTTTCGCTAATGCAGGAGTTGAGCTCCAGTGCGGA  360
            |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  241  GCTCTCAATGGCACTTCCACTCCTGCTTTCGCTAATGCAGGAGTTCAGCTCCAGTGCGGA  300

Query  361  AGGCAAAACAGGGTCGTTTCAACAGCGACCACGAATGCTGCCGGATTATTCTCGCTTCCT  420
            ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct  301  AGGCAAAACAGAGTCGTTTCAACAGCGACCACAAACGCTGCCGGATTATTCACGCTTCCT  360

Query  421  ACGGACTCAATTCAGATGTTACTTTCCACACTTCTCTCTGATTGTCGGGTCGTCGTCACG  480
            || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  361  ACAGACACAATTCAGATGTTACTTTCCACACTCCTCTCTGATTGTCGGGTCGTCGTCACG  420

Query  481  ACCCCTCTCTCCACCTGCAACGCCAACCTCCCTTCCGTTGGCAACCTCGTCTCACGGTTA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ACCCCTCTCTCCACCTGCAACGCCAACCTCCCTTCCGTTGGCAACCTCGTCTCACGGTTA  480

Query  541  GCCATGATCGGCAATAGTCTCACCGGCCTCCTCAACATCATCAGTATCATCCCTGCCGGC  600
            ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GCCATGATCGGGAACAGCCTCACCGGCCTCCTCAACATCATCAGTATCATCCCTGCCGGC  540

Query  601  TTTGGTCTTCTTAACTGA  618
            |||||||| |||| ||||
Sbjct  541  TTTGGTCTCCTTACCTGA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27677237742


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5