BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G16670.1

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904619 jgi|Araly1|904619|Al_scaffold_0003_1747                    684    0.0  
  Ahg318437 jgi|Araly1|318437|fgenesh1_pm.C_scaffold_3001453           117    1e-25


> Ahg904619 jgi|Araly1|904619|Al_scaffold_0003_1747
Length=468

 Score =  684 bits (370),  Expect = 0.0
 Identities = 436/468 (93%), Gaps = 3/468 (1%)
 Strand=Plus/Plus

Query  82   ATGGCAGTTATCAAG---AAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  138
            |||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAATTATCAAGAACAAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTG  60

Query  139  GTGTCTCCAATGGCTAACGCTCAGAGTGGTCTTGGTGGTATCAATGTCCCCATTATCAAT  198
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  61   GTGTCTCCAATGGCTAACGCTCAGATTGGTCTTGGTGGTATCAATGTCCCCATTATCAGT  120

Query  199  GGGGTTCTCTTTTGCACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTC  258
            ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||
Sbjct  121  GGGGTTCTCTTTTGCACTATCAATGGCGCCCCTCTCAATGGCACTTCTGCCCCAGCTTTC  180

Query  259  GCTAATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAACAATT  318
            ||||||||||||||||||||||||||||||| || ||||| |||||||||||| || |||
Sbjct  181  GCTAATGCGGTCGTCCAGCTCCAGTGTGGAAGCCAAAACACAGTCGTAGCAGAGACGATT  240

Query  319  ACGAACATTGCCGGATTATTCACGTTTTCTACAAACGGAATTCAGATATCCCTTCCCACA  378
            |||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  241  ACGAGCATTACCGGATTATTCACGTTTTCTACAAACGGAATTCAAATATCGCTTCCCACA  300

Query  379  CTCCTCAACGATTGTCGTATCGTCGTCCCAACCCCTCGCTCCAGCTGCGACGCCACCCTC  438
            ||||||||||| ||||||||||| |||||||||||||||||||||||| || |||| |||
Sbjct  301  CTCCTCAACGACTGTCGTATCGTTGTCCCAACCCCTCGCTCCAGCTGCAACTCCACGCTC  360

Query  439  CCTTCCACCGGACAACTGATCTCCCAGTTAAATCTCGTCGGCAGTATCGTCTCCGGCCTC  498
            ||||||||||||||||| ||||||||||||||  ||||||||||  || |||||||||||
Sbjct  361  CCTTCCACCGGACAACTCATCTCCCAGTTAAAAATCGTCGGCAGCCTCATCTCCGGCCTC  420

Query  499  CTCAACATAGTCGCTATCCTCCCAACCGGTTTTATCCCCACAATCTAA  546
            |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  421  CTCAACCTAGTCGCTATCCTCCCAACCGGTTTTATCCCCACAGTCTAA  468


> Ahg318437 jgi|Araly1|318437|fgenesh1_pm.C_scaffold_3001453
Length=558

 Score =  117 bits (63),  Expect = 1e-25
 Identities = 75/81 (93%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  97   AAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTGGTGTCTCCAATGGCTAAC  156
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  19   AAAAACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTGGTGTCTCCAATGGCTGAG  78

Query  157  GCTCAGAGTGGTCTTGGTGGT  177
            ||||||  ||| |||||||||
Sbjct  79   GCTCAGCTTGGACTTGGTGGT  99



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28249081497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5