BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G16680.1 Length=613 Score E Sequences producing significant alignments: (Bits) Value Ahg341806 jgi|Araly1|341806|fgenesh1_pg.C_scaffold_3001569 725 0.0 > Ahg341806 jgi|Araly1|341806|fgenesh1_pg.C_scaffold_3001569 Length=636 Score = 725 bits (392), Expect = 0.0 Identities = 551/625 (88%), Gaps = 21/625 (3%) Strand=Plus/Plus Query 1 GGACGAAGAGATCAAACGACTGTTCCTAGTCCAGAGGACATTGATGCAGATGCTGAAGGA 60 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 12 GGACGAAGAGATCAAACAACTGTTCCTAGTCCAGCGGACATTGATGCAGATGCTGAAGGA 71 Query 61 TCGTGGCTACT-TAATCGACGG-TTCTGAAATTACAATGACCCTAGAAGAGTTTATTGAG 118 ||||||||||| | || || || |||||||||||||||||| |||| ||||||||||||| Sbjct 72 TCGTGGCTACTCT-ATTGA-GGATTCTGAAATTACAATGACTCTAGGAGAGTTTATTGAG 129 Query 119 AAATATGGCGACAATATGAAAAGG-AGTCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 177 |||||||| || |||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 130 AAATATGGTGAAAATATGAAAAGGAAGGCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 189 Query 178 GACAATGATAAGCTTTATATTTTCTTCCCCAATGCTTCCAAAGTTGGAATTACGGAGATG 237 ||| |||| |||| |||||||||||||| ||| | ||||||||| | |||| ||| Sbjct 190 AACAGTGATCAGCTCTATATTTTCTTCCCTGATGAGGCGAAAGTTGGAGTCGCGGATATG 249 Query 238 AAGAAATACATAGACCAGTTAAAATCGGCAAACGTTTTCAGAGCAATTTTAGTGGTGCAA 297 ||||| |||||| ||| ||| ||||| | ||||||||||||||||||||| ||| ||||| Sbjct 250 AAGAAGTACATAAACCGGTTGAAATCTGAAAACGTTTTCAGAGCAATTTTGGTGATGCAA 309 Query 298 GATATAAAGGCATTTTCTCGCCAGGCTCTGGtttttttAGGTGCGGTCTATCCAATATTT 357 |||||||| | |||||||||||| |||| | ||| | ||||||| | |||||||| |||| Sbjct 310 GATATAAAAGAATTTTCTCGCCATGCTCAGCTTTCTATAGGTGCAGCCTATCCAAAATTT 369 Query 358 CATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAAGGAACATGTTTTTGTT 417 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 370 AATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAACCACCATGTTTTTGTT 429 Query 418 CCTGAGCATCAAGCTCTTACTACTGAAGAGAAGCAA-AAGTTTCT--AGAGA------G- 467 |||||||||||||||||||| ||||||||||||||| || ||||| ||||| | Sbjct 430 CCTGAGCATCAAGCTCTTACCACTGAAGAGAAGCAACAA-TTTCTGGAGAGATACACAGT 488 Query 468 -AAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCGAGATACTTTGGACT 526 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 489 GAAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCAAGATACTTTGGACT 548 Query 527 AAAACGTGGCGAAGTCGTCAAGATCTCTCGACTGAGTGAAACATCTGGTCGTTATATTAC 586 ||||||||||||||||||||||||| | || | ||||||||| ||||||||||| |||| Sbjct 549 AAAACGTGGCGAAGTCGTCAAGATCACACGTCAGAGTGAAACCTCTGGTCGTTACGTTAC 608 Query 587 TTATCG--C--TATGTTATATAACC 607 |||||| | |||||||||||||| Sbjct 609 TTATCGATCGCTATGTTATATAACC 633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22416275196 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5