BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16680.1
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341806 jgi|Araly1|341806|fgenesh1_pg.C_scaffold_3001569 725 0.0
> Ahg341806 jgi|Araly1|341806|fgenesh1_pg.C_scaffold_3001569
Length=636
Score = 725 bits (392), Expect = 0.0
Identities = 551/625 (88%), Gaps = 21/625 (3%)
Strand=Plus/Plus
Query 1 GGACGAAGAGATCAAACGACTGTTCCTAGTCCAGAGGACATTGATGCAGATGCTGAAGGA 60
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 12 GGACGAAGAGATCAAACAACTGTTCCTAGTCCAGCGGACATTGATGCAGATGCTGAAGGA 71
Query 61 TCGTGGCTACT-TAATCGACGG-TTCTGAAATTACAATGACCCTAGAAGAGTTTATTGAG 118
||||||||||| | || || || |||||||||||||||||| |||| |||||||||||||
Sbjct 72 TCGTGGCTACTCT-ATTGA-GGATTCTGAAATTACAATGACTCTAGGAGAGTTTATTGAG 129
Query 119 AAATATGGCGACAATATGAAAAGG-AGTCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 177
|||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 130 AAATATGGTGAAAATATGAAAAGGAAGGCTCTTGTTACTCTCAAAGCTAAGAAAAATGAT 189
Query 178 GACAATGATAAGCTTTATATTTTCTTCCCCAATGCTTCCAAAGTTGGAATTACGGAGATG 237
||| |||| |||| |||||||||||||| ||| | ||||||||| | |||| |||
Sbjct 190 AACAGTGATCAGCTCTATATTTTCTTCCCTGATGAGGCGAAAGTTGGAGTCGCGGATATG 249
Query 238 AAGAAATACATAGACCAGTTAAAATCGGCAAACGTTTTCAGAGCAATTTTAGTGGTGCAA 297
||||| |||||| ||| ||| ||||| | ||||||||||||||||||||| ||| |||||
Sbjct 250 AAGAAGTACATAAACCGGTTGAAATCTGAAAACGTTTTCAGAGCAATTTTGGTGATGCAA 309
Query 298 GATATAAAGGCATTTTCTCGCCAGGCTCTGGtttttttAGGTGCGGTCTATCCAATATTT 357
|||||||| | |||||||||||| |||| | ||| | ||||||| | |||||||| ||||
Sbjct 310 GATATAAAAGAATTTTCTCGCCATGCTCAGCTTTCTATAGGTGCAGCCTATCCAAAATTT 369
Query 358 CATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAAGGAACATGTTTTTGTT 417
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 370 AATATTGAAGTTTTCCAGGAGAAGGAATTGATAGTGAACGTTAACCACCATGTTTTTGTT 429
Query 418 CCTGAGCATCAAGCTCTTACTACTGAAGAGAAGCAA-AAGTTTCT--AGAGA------G- 467
|||||||||||||||||||| ||||||||||||||| || ||||| ||||| |
Sbjct 430 CCTGAGCATCAAGCTCTTACCACTGAAGAGAAGCAACAA-TTTCTGGAGAGATACACAGT 488
Query 468 -AAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCGAGATACTTTGGACT 526
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 489 GAAAGAGAACCAGCTTCCAAGGATTCACGTGACTGATCCAATTGCAAGATACTTTGGACT 548
Query 527 AAAACGTGGCGAAGTCGTCAAGATCTCTCGACTGAGTGAAACATCTGGTCGTTATATTAC 586
||||||||||||||||||||||||| | || | ||||||||| ||||||||||| ||||
Sbjct 549 AAAACGTGGCGAAGTCGTCAAGATCACACGTCAGAGTGAAACCTCTGGTCGTTACGTTAC 608
Query 587 TTATCG--C--TATGTTATATAACC 607
|||||| | ||||||||||||||
Sbjct 609 TTATCGATCGCTATGTTATATAACC 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22416275196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5