BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16690.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479135 jgi|Araly1|479135|fgenesh2_kg.3__1836__AT3G16690.1 1103 0.0
> Ahg479135 jgi|Araly1|479135|fgenesh2_kg.3__1836__AT3G16690.1
Length=825
Score = 1103 bits (597), Expect = 0.0
Identities = 740/808 (92%), Gaps = 13/808 (2%)
Strand=Plus/Plus
Query 9 TCTCATCCTATTTCAAGTCTTTCTCTATCTACTTTCCTCAGAAACCCATCCTCAGAGATG 68
||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||| |||
Sbjct 1 TCTCATCCTCTTTCAAGTC-TTCTCTATCTACCTTCCTCAGAAACCCATCCCCAGATATG 59
Query 69 GCAGACTTGAGTTTTTATGTCGGAGTCATAGGGAATGTTATATCGGTGCTTGTCTTCCTC 128
| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 60 GTAGACTTGAGTTTCTATGTTGGAGTCATAGGAAATGTGATATCGGTGCTTGTCTTCCTC 119
Query 129 TCCCCTGTGGAGACGTTTTGGAGGATAGTGCAGCGGAGATCGACGGAGGAATACGAGTGT 188
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 120 TCCCCTGTGGAGACGTTTTGGAGGATAGTGCAACGTAGATCGACGGAGGAGTACGAGTGT 179
Query 189 TTTCCGTACATTTGCACGTTAATGAGCTCGTCGTTATGGACATATTACGGAATAGTGACA 248
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGCCGTACATTTGCACGTTGATGAGCTCGTCGTTATGGACATATTACGGAATAGTGACA 239
Query 249 CCTGGTGAATACTTGGTTTCTACTGTCAATGGCTTTGGTGCTCTTGCTGAATCCATCTAC 308
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 CCTGGTGAATACTTGGTTTCTACGGTCAATGGCTTTGGTGCTCTTGCTGAATCCATTTAT 299
Query 309 GTTCTCATTTTCCTCTTCTTTGTCCCCAAATCCAGATTCTTGAAAACAGTTGTTGTGGTT 368
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 300 GTTCTCATTTTCCTCTTCTTTGTCCCCAAACCCAGATTCTTGAAAACAATTGTAGTGGTT 359
Query 369 CTAGCTTTGAACGTGTGTTTCCCAGTTATCGCGATTGCGGGAACAAGAACT-CTGTTTGG 427
||||||||||||||||||||||||||| | ||||||| ||||||||||||| | |||||
Sbjct 360 CTAGCTTTGAACGTGTGTTTCCCAGTTTTGGCGATTGTGGGAACAAGAACTGC-GTTTGA 418
Query 428 AGATGCAAACTCGCGTTCTAGTTCAATGGGTTTCATATGTGCTACTCTCAACATTATCAT 487
||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 419 AGATGAAAACAAGCGTTCGAGTTCAATGGGTTTCATATGTGCTACTCTCAACATCGCCAT 478
Query 488 GTATGGTTCTCCTCTTTCAGCTATTAAAACGGTTGTGACGACGAGAAGTGTGCAGTTTAT 547
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 479 GTATGGTTCTCCTCTTTCAGCTATTAAAACGGTTGTGACGACGAGGAGTGTGCAATTTAT 538
Query 548 GCCATTTTGGTTGTCATTTTTCCTCTTTC-TGAACGGC-GCGATTTGGGGTGTCTACGCT 605
||| ||||||||||| |||||||| |||| | |||| | |||||||||||||||||||||
Sbjct 539 GCCGTTTTGGTTGTCGTTTTTCCT-TTTCCTAAACG-CTGCGATTTGGGGTGTCTACGCT 596
Query 606 TTACTCCTACACGATATGTTTCTACTAGTGCCAAATGGAATGGGATTCTTTCTTGGGATA 665
|| |||||||| ||| | |||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 597 TTCCTCCTACATGATGTTTTTCTACTAGTGCCAAATGGAATGGGGTTCTTGCTTGGGACA 656
Query 666 ATGCAACTCCTAATTTATGCCTATTACAGAAATGCCGAACC-AATTGTAGAAGATGAAGA 724
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 657 ATGCAACTCCTAATTTATGCCTATTACAGAAATGCCCAACCTAAT-GTAGAAGATGAAGA 715
Query 725 AGGCCTCATACCAAATCAACCTCTCCTCGCTTAACCTC-GTCTTTTACCCATCAAAATTT 783
|||||||||||||| |||||||| ||| ||||||||| | |||||| |||| |||||
Sbjct 716 AGGCCTCATACCAAGCCAACCTCTTCTCTCTTAACCTCAG-CTTTTATCCATAAAAATAA 774
Query 784 CTAAAATAATTTA-TCCT-GACAAACAA 809
|||||| |||| | | || |||||||||
Sbjct 775 CTAAAACAATTCAATTCTTGACAAACAA 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5