BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16700.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479137 jgi|Araly1|479137|fgenesh2_kg.3__1838__AT3G16700.1 1151 0.0
Ahg493291 jgi|Araly1|493291|fgenesh2_kg.7__2724__AT4G15940.1 697 0.0
> Ahg479137 jgi|Araly1|479137|fgenesh2_kg.3__1838__AT3G16700.1
Length=722
Score = 1151 bits (623), Expect = 0.0
Identities = 691/723 (96%), Gaps = 8/723 (1%)
Strand=Plus/Plus
Query 78 TTGACATAAAAATGGCGACTTCGATGATTCAGAGATTGTTCAAACAAGGCACAAAGATCG 137
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTGACATAAAAATGGCGACTTCGATGATTCAGAGATTGTTCAAGCAAGGCACAAAGATCG 60
Query 138 TCGGCGTTGGACTCAATTACGCTTCTCACGCCAAAGAACTTGGCAATGCCCTCCCAAAGG 197
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 61 TCGGCGTTGGACTCAATTACGCTTCCCACGCCAAAGAACTTGGCAACGCCCTCCCAAAGG 120
Query 198 ACCCGATTGTGTTCTTAAAGCCAACTTCGTCGTACCTGGAAAACGGTGGAACAATAGAGA 257
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 121 ACCCGATTGTGTTCTTGAAGCCAACCTCTTCGTACCTGGAAAACGGTGGAACAATAGAGA 180
Query 258 TCCCACATCCACTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTAATTGGACAGA 317
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TCCCACATCCTCTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTGATTGGACAGA 240
Query 318 AAGCAAGAGATGTCCCAGAACGGTTAGCCATGAATTACATTGGAGGATATGCGCTTGCTC 377
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AAGCAAGAGATGTTCCAGAACGGTTAGCCATGGATTACATTGGAGGATATGCGCTTGCTC 300
Query 378 TTGATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGC 360
Query 438 TTGCTAAAGGACAGGATACCTTCACCCCCATCAGCTCCGTTCTACCAAAGGCAATGGTGC 497
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 361 TTGCTAAAGGACAGGATACCTTCACTCCCATCAGCTCCGTTTTACCAAAGGCAATGGTGG 420
Query 498 TGG------ATCCCAATAACCTGGAACTCTGGCTAAAGGTAGATGATGAGACAAGACAGA 551
||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 421 TGGTGGTGGATCCCAATAACCTGGAACTTTGGCTTAAGGTCGATGATGAGACAAGACAGA 480
Query 552 AAGGTTGGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGTTCTG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 AAGGTTGGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGCTCTG 540
Query 612 TAATGACCCTTTTCAAAGGAGATGTCATATTGACAGGTACACCAGAAGGTATAGGACCTG 671
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 TAATGACCCTTTTCAAAGGAGATGTTATATTGACAGGTACACCAGAAGGTATAGGACCTG 600
Query 672 TAAAGATAGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACG 731
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TAAAGATTGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACG 660
Query 732 TCGGTAGGCGGCTAAAGCCATTGTTGAGATAGTATTTTGTGAATCAT-TTGTTGTATAAA 790
| |||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 661 TAGGTAGGCGTATAAAGCCATTGTTGAGATAGTGTTTTGTGAATC-TCTTGTTGTATAAT 719
Query 791 CTT 793
|||
Sbjct 720 CTT 722
> Ahg493291 jgi|Araly1|493291|fgenesh2_kg.7__2724__AT4G15940.1
Length=914
Score = 697 bits (377), Expect = 0.0
Identities = 582/679 (86%), Gaps = 21/679 (3%)
Strand=Plus/Plus
Query 85 AAAAATGGCGACTTCGATGATTCAGA-GATTGTTCAAACAAGGCACAAAGATCGTCGGCG 143
|||||||||||| |||||||| |||| || |||| || |||||||| ||||||||| |||
Sbjct 32 AAAAATGGCGACGTCGATGATACAGAGGA-TGTTTAAGCAAGGCACGAAGATCGTCTGCG 90
Query 144 TTGGAC-TCAATTACGCTTCTCACGCCAAAGAACTTGGCAATGCC-CTCCCAAAGG-ACC 200
| || | | || ||||| |||||||||||||||| ||||| ||| |||| |||| |||
Sbjct 91 TCGGCCGT-AACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTTCCC-AAGGAACC 148
Query 201 CGATTGTGTTCTTAAAGCCAACTTCGTCGTACCTGGAAAACGGTGGAACAATAGAGATCC 260
| || | ||||| |||||||| |||||||| ||||||| || |||||||| |||||||
Sbjct 149 AG-TTATATTCTTGAAGCCAACATCGTCGTATTTGGAAAATGGAGGAACAATTGAGATCC 207
Query 261 CACATCCACTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTAATTGGACAGAAAG 320
||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 208 CACATCCTTTGGATTCACTTCACCATGAAGTGGAACTTGCTTTAGTGATTGGACAGAAGG 267
Query 321 CAAGAGATGTCCCAGAA-CGGTTAGCCATGAATTACATTGGAGGATATGCGCTTGCTCTT 379
| |||||||| || ||| | |||| ||| |||||||||||||||||||| ||||||||
Sbjct 268 CTAGAGATGTACCTGAATC-AATAGCTATGGATTACATTGGAGGATATGCGGTTGCTCTT 326
Query 380 GATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGCTT 439
|||||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||||
Sbjct 327 GATATGACGGCTAGGGAACTCCAAGCTTCCGCCAAGGCATCTGGTCTCCCATGGACGCTT 386
Query 440 GCTAAAGGACAGGATACCTTCACCCCCATCAGCTCCGTTCTACCAAAGGCAATGGTGC-T 498
||||||||||| ||||||||||| || || ||||| ||||| |||||||| ||||||| |
Sbjct 387 GCTAAAGGACAAGATACCTTCACTCCTATAAGCTCTGTTCTGCCAAAGGCGATGGTGCAT 446
Query 499 GGATCCCAATAACCTGGAACTCTGGCTAAAGGTAGATGATGAGACAAGACAGAAAGG-TT 557
|||||| |||| || ||||| ||||| ||||| |||| ||| ||||||||||| || ||
Sbjct 447 -GATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAAGGGCTT 505
Query 558 GGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGTTCTGTAATGA 617
|||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 506 -GACAAAAGATATGATCTTCAAGGTCCCGTACCTCATCAGCTACATAAGTTCTATAATGA 564
Query 618 CCCTTTTCAAAGGAGATGTCATATTGACAGGTACACCAGAAGGTATAGGACCTGTAAAGA 677
|||||| | ||||||| ||| ||| | ||| |||||||||||| | |||||||||||||
Sbjct 565 CCCTTTACGAAGGAGACGTC--ATT-ATAGGCACACCAGAAGGTGTTGGACCTGTAAAGA 621
Query 678 TAGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACGTCG-GT 736
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || | |
Sbjct 622 TAGGTCAGAAGATAACGGCCGGGATCACCGGTCTATCTGAAGTTCAGTTCGATGTGGAG- 680
Query 737 AGGCG-GCTAAAGCCATTG 754
||||| | ||||||| |||
Sbjct 681 AGGCGTG-TAAAGCCCTTG 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5