BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G16710.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479138 jgi|Araly1|479138|fgenesh2_kg.3__1839__AT3G16710.1 2132 0.0
Ahg947602 jgi|Araly1|947602|scaffold_703831.1 874 0.0
> Ahg479138 jgi|Araly1|479138|fgenesh2_kg.3__1839__AT3G16710.1
Length=1513
Score = 2132 bits (1154), Expect = 0.0
Identities = 1404/1524 (92%), Gaps = 19/1524 (1%)
Strand=Plus/Plus
Query 1 ATGCGTAGATCCATTGCGACTGGGTTTGCGTCGATAGT---GAAGGGATTTCATCTTCAT 57
||||||||||||||| | |||||||||||||||||||| |||||| ||||| || |
Sbjct 1 ATGCGTAGATCCATTACCACTGGGTTTGCGTCGATAGTGAAGAAGGGGTTTCA---TC-T 56
Query 58 AGTCATAGACATCGTCTACAGATAAGTAA-CCCTAGAACTGCTGCTTCCTTAAGCCTTTG 116
||||||||||||||| ||||||||||| | | || || || | |||||||||||||
Sbjct 57 --TCATAGACATCGTCTTCAGATAAGTAATCAC-GGAGCTTCTCCGACCTTAAGCCTTTG 113
Query 117 TGGTTTCTGTTTCTGGATTCGAGCTTTTTCTAGTTACCGAAAGATTTTGAGAAACGGTCT 176
||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 114 TGGTTTCTGTTTCTGGATTCGAGCTTTCTCTAACTACCGGAAGATTTTGAGAAATGGTCT 173
Query 177 TCACAATCTTCAGTTTAATGATGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCC 236
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCACAATCTTCAGTTTAACGAGGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCC 233
Query 237 CCTTCCTTCAATTATCGATTTCACTAGATTATTGAGTGTTATTGCAAAGATGAATAGATA 296
|||||||||||| ||||||||||||| | ||||||||||| ||||||||||| || |
Sbjct 234 TCTTCCTTCAATTGTCGATTTCACTAGGCTGTTGAGTGTTATCGCAAAGATGAAGAGGTT 293
Query 297 TGATGTTGTGATTTCTCTCTTTGAGCAAATGCAAATCCTGGGGATTCCACCTCTTCTT-T 355
|||||||||||| ||||| || |||||||||||||| ||||| ||| ||||| || || |
Sbjct 294 TGATGTTGTGATCTCTCTATTCGAGCAAATGCAAATTCTGGGAATTTCACCTGTT-TTGT 352
Query 356 GTACTTGCAATATCGTTATGCATTGTGTTTGTCTATCTTCTCAGCCTTGTCGTGCTTCGT 415
||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||
Sbjct 353 ATACCTGCAATATCGTTATGAATTGTGTTTGTCGATCTTCTCAACCTTGTCGTGCTTCGT 412
Query 416 GCTTTCTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGACTTAGTCACGTTTACTTCTC 475
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 413 GTTTTCTTGGGAAGATGATGAAACTTGGTTTTGAACCTGACTTAGTCACGTTTACTTCTC 472
Query 476 TGCTTAATGGTTACTGTCATTGGAATAGAATTGAGGATGCTATAGCTCTGTTTGATCAGA 535
||||| |||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 473 TGCTTCATGGATACTGTCAGTGGAATAGAATTGAGGATGCTTTAGCTTTGTTTGATCAGA 532
Query 536 TT-TTGGGAATGGGATTTAAACCTAATGTTGTGACATACACCACATTGATTCGCTGTCTT 594
|| || ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 533 TTGTT-GGAATGGGATTTAGACCTAATGTTGTGACATACACTACATTGATTCACTGTCTT 591
Query 595 TGTAAAAACCGACATTTGAATCACGCGGTGGAGCTTTTTAACCAGAT-GGGGACTAATGG 653
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||
Sbjct 592 TGTAAAAACCGACATTTGAACCACGCGGTGGAGATTTTTAACCAGATGGGGGA-TAATGG 650
Query 654 GAGTAGACCGAATGTTGTTACCTACAACGCTCTTGTTACCGGTCTTTGCGAGATTGGTAG 713
|| ||||||||||||||||||||| ||| ||||||| | |||| ||||||||||||||||
Sbjct 651 GATTAGACCGAATGTTGTTACCTATAACTCTCTTGTAAGCGGTTTTTGCGAGATTGGTAG 710
Query 714 ATGGGGTGATGCTGCTTGGCTTCTGAGGGATATGATGAAGAGGAGAATTGAACCTAATGT 773
|||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 711 ATGGAGCGATGCTGCTTGGCTTCTGAGGGATATGATGAAGAGGGGAATTCAACCTAATGT 770
Query 774 AATCACTTTCACTGCGTTGATCGATGCGTTTGTGAAAGTGGGGAAGCTTATGGAGGCTAA 833
|||||||||||||| ||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct 771 CATCACTTTCACTGCTTTGATCGATGCGTTTGTTAAAGTAGGGAAGATCATGGAGGCTAA 830
Query 834 AGAACTGTACAATGTGATGATCCAAATGTCTGT-GTATCCTGATGTTTTCACTTACGGTT 892
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 831 AGAACTGTACAAGGTGATGATCCAAATGTCTGTAG-ATCCTGATGTTTTCACTTACACTT 889
Query 893 CACTGATCAATGGGCTTTGCATGTATGGTCTCTTAGATGAGGCTAGGCAAATGTTTTATT 952
||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 890 CACTGATCAATGGGCTTTGCACGTACGGTCACCTAGATGAGGCTAGGCAAATGTTTTATT 949
Query 953 TGATGGAAAGGAATGGTTGCTACCCGAATGAAGTGATTTATACTACTCTCATACATGGAT 1012
|||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 950 TGATAGAAAGCAATGGTTGCTACCCAAATGAAGTGACTTATACTACTCTCATACATGGAT 1009
Query 1013 TTTGCAAGTCTAAAAGGGTAGAGGACGGGATGAAAATCTTCTATGAGATGTCGCAGAAAG 1072
||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1010 TTTGCAAGTCTAAGAGGGTAGAGGACGGGACGAAAATCTTCTATGAGATGTCCCGGAAAG 1069
Query 1073 GAGTAGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTGTCTAGTGGGCA 1132
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1070 GATTAGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTGTCTGGTGGGCA 1129
Query 1133 GACCTGATGTTGCCCAAGAAGTTTTCAATCAGATGAGTTCTCGTCGTGCGCCTCCAGATA 1192
| || |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1130 GGCCCGATGTTGCCCAAGAAGTTTTCAATCAGATGGGTTCTCGCCGTGCGCCTCCGGATA 1189
Query 1193 TTAGGACATACAACGTTTTGTTAGATGGTCTTTGTTGTAATGGGAAAGTAGAGAAGGCAT 1252
|||| || |||||||||||||||||||||||||||| ||||||| | ||||| |||||||
Sbjct 1190 TTAGAACCTACAACGTTTTGTTAGATGGTCTTTGTTATAATGGGTACGTAGAAAAGGCAT 1249
Query 1253 TGATGATATTCGAATACATGCGGAAGAGAGAGATGGATATTAATATTGTTACATATACCA 1312
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1250 TGATGATATTCAAATACATGCGGAAGAGGGAGATGGATATTAATATTGTTACATATACTA 1309
Query 1313 TCATTATTCAAGGGATGTGCAAGCTTGGTAAGGTGGAAGATGCTTTTGATTTATTTTGTA 1372
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCATTATCCAAGGGATGTGCAAGGTTGGTAAGGTGGAAGATGCTTTTGATTTATTTTGTA 1369
Query 1373 GCCTTTTCTCCAAAGGAATGAAGCCTAATGTTATAACCTACACCACAATGATATCGGGAT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GCCTTTTCTCCAAAGGAATGAAGCCTAATGTTATAACCTACACCACAATGATATCGGGAT 1429
Query 1433 TTTGTAGGCGAGGCTTAATTCATGAAGCTGATTCGCTGTTTAAGAAAATGAAAGAAGATG 1492
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1430 TTTGTAGGCGAGGCTTAATTCATGAAGCTGATGCGCTGTTTAAGAAAATGAAAGAAGATG 1489
Query 1493 GGTTCTTACCAAATGAAAGTGTGT 1516
||||||||||||||||||||||||
Sbjct 1490 GGTTCTTACCAAATGAAAGTGTGT 1513
> Ahg947602 jgi|Araly1|947602|scaffold_703831.1
Length=1621
Score = 874 bits (473), Expect = 0.0
Identities = 963/1194 (81%), Gaps = 56/1194 (5%)
Strand=Plus/Plus
Query 125 GTTTCTGGATTCGAGCTTTTTCTAGTTACCGAAAGATTTTGAGAAACGGTCTTCACAATC 184
|||||||| |||||||||||| || ||||||| ||||||||||||| || |||||| ||
Sbjct 109 GTTTCTGGGTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGACTTCACTCTC 168
Query 185 TTCAGTTTAATGATGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCCCCTTCCTT 244
||||||||||||| |||||||||||||||| || |||||| | |||||||| |||||||
Sbjct 169 TTCAGTTTAATGAAGCTCTTGATTTGTTCAGTCACATGGTTGAGTCTCGTCCTCTTCCTT 228
Query 245 CAATTATCGATTTCACTAGATTATTGAGTGTTATTGC-AAAGATGAATA-GATATGATGT 302
||||||||||||||||||||||||||| ||||||||| ||| ||||| | | | ||||||
Sbjct 229 CAATTATCGATTTCACTAGATTATTGAATGTTATTGCCAAA-ATGAAGAAGTT-TGATGT 286
Query 303 TGTGATTTCTCTCTTTG-A-GCAAATGCAAATCCTGGG-GATTCCACCTCTTCTTTGTAC 359
|||||| | ||| || | ||| ||||||| |||| | ||| | | ||| | |||
Sbjct 287 TGTGAT--CAATCTGTGCAAGCATTTGCAAATAATGGGAGTTTCGAA-TGATCTCTATAC 343
Query 360 TTGCAATATCGTT-ATGCATTGTGTT-TGTCTATCTTCTCAGCCTTGTCGTGCTTCGTGC 417
||| ||| | || ||| ||||| || |||| ||||||||||||||||| |||||| | |
Sbjct 344 TTGTAATCTT-TTGATGAATTGT-TTCTGTCAATCTTCTCAGCCTTGTCTTGCTTCTT-C 400
Query 418 TTT-CTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGAC-TTAGTCACGTTTACTTCTC 475
||| ||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 401 TTTTCTTGGGAAGCTGATGAAACTTGGTTTTGAGCCTGACATTT-TCACGTTTACTTCTC 459
Query 476 TGCTTAATGG-TTACTGTCATTGG-AATAGAATTGAGGATGCTATAG-CTCTGTTTGA-T 531
|| | ||||| || ||||| | || |||||||||||||| || || | || || | || |
Sbjct 460 TGATCAATGGGTT-CTGTC-TCGGGAATAGAATTGAGGAGGCCAT-GTCTATGGT-GAAT 515
Query 532 CAGATTTTGG-GAATGGG-ATTTAAACCTAATGTTGTGACATACACCACATTGATTCGCT 589
||||| ||| || |||| ||| ||||| ||||||| | || || ||| | || || |
Sbjct 516 CAGATGGTGGAGA-TGGGGATT-AAACCCGATGTTGTAATGTATACAACAATCAT-CGAT 572
Query 590 -GTCTTTGTAAAAACCGACATTTGAATCACGCGGTGGAGCTTTTT-AACCAGATGGGGA- 646
|||||||||||||| ||||| || || ||||| || ||| |||| || || |||| |
Sbjct 573 AGTCTTTGTAAAAACGGACATGTGGATAACGCGTTG-AGCCTTTTCAATCAAATGGAAAA 631
Query 647 CTAATGGGAGTAGACCGAATGTTGTTACCTACAACGCTCTTGTTACCGGTCTTTGCGAGA 706
||| ||||| ||||||| ||||||||| |||| | |||| || | ||||||||| |
Sbjct 632 CTA-TGGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTCATCGGTCTTTGTAAC- 689
Query 707 T-TGGTAGATGGGGTGATGCTGCTTGGCTT-CTGAGGGATATGATGAAGAGGAGAATTGA 764
| |||||||||| | ||||||| | || || |||| |||||||||||||| ||| |
Sbjct 690 TCTGGTAGATGGAGAGATGCTGATCCA-TTGCTCAGGGGTATGATGAAGAGGAAAATCAA 748
Query 765 ACCTAATGTAATCACTTTCACTGCGTTGATCGATGCGTTTGTGAAAGTGGGGAAGCTTAT 824
| || ||||||||||||||| ||| |||||||||||||||||||||| || |||||| |
Sbjct 749 AGCTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAAGGAAAGCTTTT 808
Query 825 GGAGGCTAAAGAACTGTACAATGTGATGATCCAAATGTCTGT-GTATCCTGATGTTTTCA 883
||| ||||||||| ||||||||| |||||| | ||||||| | | |||| || ||||||
Sbjct 809 GGATGCTAAAGAATTGTACAATGAGATGATTCGAATGTCTATAGC-TCCTAATATTTTCA 867
Query 884 CTTACGGTTCACTGATCAATGGGCTTTGCATGTATGGTCTCTTAGATGAGGCTAGGCAAA 943
|||| |||| |||||||||||||||||||| | |||| |||||||||||| || ||||
Sbjct 868 CTTATACTTCATTGATCAATGGGCTTTGCATGGAGGGTCGCTTAGATGAGGCCAGACAAA 927
Query 944 TGTTTTATTTGATGGAAAGGAATGGTTGCTACCC-GAATGAAGTGATTTATAC-TACTCT 1001
||||| |||||||||||| || ||||| | || || | |||| |||||| | ||||
Sbjct 928 TGTTTCATTTGATGGAAACCAAGGGTTGTTTTCCAGAC-GTAGTGGCTTATACCT-CTCT 985
Query 1002 CATACATGGATTTTGCAAGTCTAA-AAGGGTAGAGGACGGGATGAAAATCTTCTATGAGA 1060
|||| |||| |||| ||||| ||| |||| ||||||| | ||||||||||||||| ||||
Sbjct 986 CATAAATGGGTTTTACAAGTGTAAGAAGG-TAGAGGATGCGATGAAAATCTTCTACGAGA 1044
Query 1061 TGTCGCAGAAAGGAGT-AGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTAT 1119
|||| || |||||| | | | | || ||||||||||||||| ||||||||| |||| |
Sbjct 1045 TGTCCCAAAAAGGATTGACTGGGAA-CACAATCACTTACACTACTCTTATCCAAGGTT-T 1102
Query 1120 TG-TCTAGTGGGCAGACCTGATGTTGCCCAAGAAGTTTTCAATCAGATGAGTT-CTCGTC 1177
|| ||||||||||| |||| |||| |||||||||||||||| ||| ||| ||| |||||
Sbjct 1103 TGGTCTAGTGGGCAAACCTAATGTCGCCCAAGAAGTTTTCAGTCATATG-GTTTCTCGTG 1161
Query 1178 GTGCGCCTCC-AGATATTAGGACATACAACGTTTTGTTAGATGGTCTTTGTTGTAATGGG 1236
| | |||||| | |||||||||| ||||| || |||||| || |||| |||| ||| |||
Sbjct 1162 GCGTGCCTCCCA-ATATTAGGACTTACAATGTATTGTTACATTGTCTATGTTATAACGGG 1220
Query 1237 AAAGTAGAGAAGGCATTGATGATATTCGAATACATGCGGAAGAGAGAGATGGAT 1290
|| ||| |||| || ||||||||||| || | |||| |||||||| || |||
Sbjct 1221 AAGGTAAAGAAAGCGTTGATGATATTTGAGGATATGCAAAAGAGAGAAATAGAT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5